pycom420g00790

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_420
Physical Location & Seq
Forward (+)
976586 .. 977620
1035 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom420g00790.4

Sequence Viewer

Length: 402 bp
ATGCAACCTAATTTCGTGATTTTTCGTTGTGTAGTTGTTCTTTTTGGCTTGTTGTGGCTGGTTTTGCACCACACACTTCTCTCCCACACTCCACACCCTTTTCTCCCTTTCCCTGTACCTGTCCCGAGTTCCCATTCCTTTCCTATTTTCCTTGAAACCCATGCTCATGAGGCTCGTAGGAGTCCAACCATACCTATTTCAGTTCAAGCTTGTAGGAAGCTTGGTGAGGTCCCTAGGAGGCTCGGGGTGGTTCGTTTGAAGGTTTTGGACTTCGAGATCACGAGTTTCGAGGTTGGCCGAAGTTGGGGTGATTTTCCAGTTGTTTCGCATATAGGTGATACCTATCCCGAGGACGAGCGTGGTCACTCGAGGCAGGGGGGTTACGACCCTTCCACATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.11

Weight (kDa)

7.13

Isoelectric Point (pI)

59.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 295
AfaI GTAC 1 cut(s) 117
AfiI CCNNNNNNNGG 1 cut(s) 304
AgsI TTSAA 3 cut(s) 155, 206, 259
AluBI AGCT 2 cut(s) 209, 220
AluI AGCT 2 cut(s) 209, 220
Ama87I CYCGRG 4 cut(s) 124, 242, 347, 367
AoxI GGCC 1 cut(s) 295
AspA2I CCTAGG 1 cut(s) 233
AspS9I GGNCC 1 cut(s) 229
AsuHPI GGTGA 3 cut(s) 236, 320, 347
AvaI CYCGRG 4 cut(s) 124, 242, 347, 367
AvaII GGWCC 1 cut(s) 229
AvrII CCTAGG 1 cut(s) 233
BauI CACGAG 1 cut(s) 280
BfaI CTAG 2 cut(s) 234, 400
BlnI CCTAGG 1 cut(s) 233
Bme18I GGWCC 1 cut(s) 229
BmeT110I CYCGRG 4 cut(s) 124, 242, 347, 367
BmgT120I GGNCC 1 cut(s) 229
BmiI GGNNCC 1 cut(s) 231
BsaBI GATNNNNATC 1 cut(s) 342
BsaJI CCNNGG 2 cut(s) 233, 348
Bsc4I CCNNNNNNNGG 1 cut(s) 304
Bse1I ACTGG 1 cut(s) 317
Bse8I GATNNNNATC 1 cut(s) 342
BseDI CCNNGG 2 cut(s) 233, 348
BseJI GATNNNNATC 1 cut(s) 342
BseLI CCNNNNNNNGG 1 cut(s) 304
BseNI ACTGG 1 cut(s) 317
BshFI GGCC 1 cut(s) 297
BsiHKCI CYCGRG 4 cut(s) 124, 242, 347, 367
BslFI GGGAC 2 cut(s) 107, 215
BslI CCNNNNNNNGG 1 cut(s) 304
BsmFI GGGAC 2 cut(s) 107, 215
BsnI GGCC 1 cut(s) 297
BsoBI CYCGRG 4 cut(s) 124, 242, 347, 367
Bsp143I GATC 1 cut(s) 276
BspANI GGCC 1 cut(s) 297
BspHI TCATGA 1 cut(s) 166
BspLI GGNNCC 1 cut(s) 231
BsrI ACTGG 1 cut(s) 317
BssECI CCNNGG 2 cut(s) 233, 348
BssMI GATC 1 cut(s) 276
BssSI CACGAG 1 cut(s) 280
BssT1I CCWWGG 1 cut(s) 233
Bst2BI CACGAG 1 cut(s) 280
BstKTI GATC 1 cut(s) 279
BstMBI GATC 1 cut(s) 276
BstMWI GCNNNNNNNGC 2 cut(s) 64, 170
BsuRI GGCC 1 cut(s) 297
CciI TCATGA 1 cut(s) 166
Cfr13I GGNCC 1 cut(s) 229
Csp6I GTAC 1 cut(s) 116
CviAII CATG 2 cut(s) 161, 167
CviJI RGCY 7 cut(s) 48, 58, 173, 209, 220, 241, 297
CviKI_1 RGCY 7 cut(s) 48, 58, 173, 209, 220, 241, 297
CviQI GTAC 1 cut(s) 116
DpnI GATC 1 cut(s) 278
DpnII GATC 1 cut(s) 276
EaeI YGGCCR 1 cut(s) 295
Eco130I CCWWGG 1 cut(s) 233
Eco47I GGWCC 1 cut(s) 229
Eco88I CYCGRG 4 cut(s) 124, 242, 347, 367
EcoO109I RGGNCCY 1 cut(s) 229
EcoT14I CCWWGG 1 cut(s) 233
ErhI CCWWGG 1 cut(s) 233
FaeI CATG 2 cut(s) 164, 170
FaiI YATR 6 cut(s) 162, 168, 191, 330, 332, 397
FaqI GGGAC 2 cut(s) 107, 215
FatI CATG 2 cut(s) 160, 166
FspBI CTAG 2 cut(s) 234, 400
HaeIII GGCC 1 cut(s) 297
Hin1II CATG 2 cut(s) 164, 170
HindIII AAGCTT 2 cut(s) 207, 218
HinfI GANTC 1 cut(s) 181
HphI GGTGA 3 cut(s) 236, 320, 347
Hpy188III TCNNGA 6 cut(s) 16, 124, 167, 274, 280, 347
HpyAV CCTTC 2 cut(s) 253, 399
HpyCH4V TGCA 2 cut(s) 4, 67
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 170
Hsp92II CATG 2 cut(s) 164, 170
Kzo9I GATC 1 cut(s) 276
LpnPI CCDG 5 cut(s) 44, 126, 132, 330, 359
MaeI CTAG 2 cut(s) 234, 400
MaeIII GTNAC 2 cut(s) 362, 380
MalI GATC 1 cut(s) 278
MboI GATC 1 cut(s) 276
MluCI AATT 1 cut(s) 10
MlyI GAGTC 1 cut(s) 190
MmeI TCCRAC 1 cut(s) 209
MnlI CCTC 6 cut(s) 163, 220, 231, 283, 343, 363
MslI CAYNNNNRTG 2 cut(s) 165, 333
MwoI GCNNNNNNNGC 2 cut(s) 64, 170
NdeII GATC 1 cut(s) 276
NlaIII CATG 2 cut(s) 164, 170
NlaIV GGNNCC 1 cut(s) 231
NmuCI GTSAC 1 cut(s) 362
PaeR7I CTCGAG 1 cut(s) 367
PagI TCATGA 1 cut(s) 166
PleI GAGTC 1 cut(s) 189
PpsI GAGTC 1 cut(s) 189
PpuMI RGGWCCY 1 cut(s) 229
Psp5II RGGWCCY 1 cut(s) 229
PspN4I GGNNCC 1 cut(s) 231
PspPI GGNCC 1 cut(s) 229
PspPPI RGGWCCY 1 cut(s) 229
PspXI VCTCGAGB 1 cut(s) 367
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
RseI CAYNNNNRTG 2 cut(s) 165, 333
Sau3AI GATC 1 cut(s) 276
Sau96I GGNCC 1 cut(s) 229
SchI GAGTC 1 cut(s) 190
Sfr274I CTCGAG 1 cut(s) 367
SinI GGWCC 1 cut(s) 229
SlaI CTCGAG 1 cut(s) 367
SmiMI CAYNNNNRTG 2 cut(s) 165, 333
SmlI CTYRAG 1 cut(s) 367
SmoI CTYRAG 1 cut(s) 367
Sse9I AATT 1 cut(s) 10
SspMI CTAG 2 cut(s) 234, 400
StyI CCWWGG 1 cut(s) 233
TaqI TCGA 3 cut(s) 273, 288, 368
TasI AATT 1 cut(s) 10
TseFI GTSAC 1 cut(s) 362
Tsp45I GTSAC 1 cut(s) 362
VpaK11BI GGWCC 1 cut(s) 229
XhoI CTCGAG 1 cut(s) 367
XmaJI CCTAGG 1 cut(s) 233
XspI CTAG 2 cut(s) 234, 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.