pycom02g18770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000513
Physical Location & Seq
Forward (+)
16874335 .. 16875793
1459 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g18770.1

Sequence Viewer

Length: 1050 bp
ATGGTTGAAAAACGAAGGAGAAAACAAAGTTTGAAAAATTCCCAGTTTTCTGGCGCCGTCGCCGGCGCCGGAGGCTCGCCGGAGAAGAAAGGGGAATATTCCGTTAAGTCTAACGGAATATTCCTAACGGCAGTGACGGAATCTGTGCACGTGGCCGCGCGTGGGGGGCGCGTAGGTCCGTGCCTGTTCAGGCGCGTGGGGGCGCGTGCGTGGTCCAAATTTTTTTCTAAAAATATGGGTGTGATCCTGAGGTTGTGTAGGTCACGTTGGTATATTCAATTGTCCAATTTGAGCAATGTGATTCATTTTCCGAGGACGAGCGTACACACTCGAGGCAGGGGGGCTACGACCCTTCTAATTATCAGTGAGTGGGCTTTTAATAGAAAAGGTTATTTGTTTTATGCCATGCATCGTATGAATGTTGTTTACGCATCATCGCATGTATTAGTAGTGGCATACATATATATAAATGTCGGTATTCATGTGGTTATGCATTCCTGTTTATTATGCAATAGTATGCTCCCGCCCAGTGTGAGGGGCATAGCCTTCACGTGTATGTTCACCAGCACCGCCTGCTCGCCTTGGATCGATCCTCTCACACAAGTTAGGTGCAAGCCTGTCGTACAGTCCACATTAGCTTCACGTGATCGTAGCACTAGAGCATACATATATATATTACACCAGCCTGTCGTGCAGACCACGTTAGGTGGCTCCGACTTGTGTGCAGATTCAGATGTTGAGTTGAGATTGGAGCTCTATATGCAGCGGTACATGTCACCATTTACATTTGATTACGAGATTCTGTTGTGGCATATTCTCAAGCATGAATGGCATATTGTGAGCATGAATGGCATATTGTGGAGCATGATTGACATACCTATACATACGTATATATGTTCATTTTCTGGGAAGTATACAGGTTTTACGAGCTTTGTTTTTGCCCACTCACGCTTTTGTTTTTGCGCCCCTCCAGGTTCTAGTGGTCTAGCAAGTTCGGTGGTTTATCCCAGAGGGCGTCCCGGCATTTCTGACAGACATTCACCATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

350

Amino Acids

39.24

Weight (kDa)

9.85

Isoelectric Point (pI)

54.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 53, 65
AccI GTMKAC 1 cut(s) 914
AccII CGCG 5 cut(s) 158, 160, 171, 195, 205
AciI CCGC 4 cut(s) 156, 524, 570, 766
AclWI GGATC 3 cut(s) 238, 584, 593
AcoI YGGCCR 1 cut(s) 153
AcsI RAATTY 2 cut(s) 37, 218
AcvI CACGTG 3 cut(s) 151, 552, 644
AcyI GRCGYC 3 cut(s) 54, 66, 1015
AfaI GTAC 3 cut(s) 324, 624, 770
AfiI CCNNNNNNNGG 2 cut(s) 162, 534
AflIII ACRYGT 2 cut(s) 551, 771
AgsI TTSAA 3 cut(s) 8, 34, 278
AjnI CCWGG 1 cut(s) 970
AluBI AGCT 3 cut(s) 638, 754, 930
AluI AGCT 3 cut(s) 638, 754, 930
Alw21I GWGCWC 2 cut(s) 150, 756
Alw44I GTGCAC 1 cut(s) 146
AlwI GGATC 3 cut(s) 238, 584, 593
Ama87I CYCGRG 1 cut(s) 330
AoxI GGCC 1 cut(s) 153
ApaLI GTGCAC 1 cut(s) 146
ApeKI GCWGC 1 cut(s) 763
ApoI RAATTY 2 cut(s) 37, 218
AspLEI GCGC 7 cut(s) 56, 68, 160, 171, 195, 205, 965
AspS9I GGNCC 2 cut(s) 176, 213
AsuC2I CCSGG 1 cut(s) 1020
AsuHPI GGTGA 3 cut(s) 553, 768, 1032
AvaI CYCGRG 1 cut(s) 330
AvaII GGWCC 2 cut(s) 176, 213
AxyI CCTNAGG 1 cut(s) 248
BaeGI GKGCMC 1 cut(s) 150
BanI GGYRCC 2 cut(s) 53, 65
BanII GRGCYC 1 cut(s) 756
BbrPI CACGTG 3 cut(s) 151, 552, 644
Bbv12I GWGCWC 2 cut(s) 150, 756
BbvI GCAGC 1 cut(s) 775
BceAI ACGGC 2 cut(s) 41, 144
BcgI CGANNNNNNTGC 4 cut(s) 601, 635, 704, 738
BciT130I CCWGG 1 cut(s) 972
BcnI CCSGG 1 cut(s) 1020
BfaI CTAG 3 cut(s) 657, 978, 986
BfoI RGCGCY 2 cut(s) 57, 69
BisI GCNGC 2 cut(s) 156, 764
BlsI GCNGC 2 cut(s) 157, 765
Bme1390I CCNGG 2 cut(s) 972, 1020
Bme18I GGWCC 2 cut(s) 176, 213
BmeT110I CYCGRG 1 cut(s) 330
BmgT120I GGNCC 2 cut(s) 176, 213
BmiI GGNNCC 3 cut(s) 55, 67, 712
BmrFI CCNGG 2 cut(s) 972, 1020
BmrI ACTGGG 2 cut(s) 37, 522
BmsI GCATC 2 cut(s) 418, 440
BmuI ACTGGG 2 cut(s) 37, 522
BpmI CTGGAG 1 cut(s) 954
BpuEI CTTGAG 1 cut(s) 803
BpuMI CCSGG 1 cut(s) 1020
Bsa29I ATCGAT 1 cut(s) 588
BsaAI YACGTR 4 cut(s) 151, 552, 644, 888
BsaHI GRCGYC 3 cut(s) 54, 66, 1015
BsaJI CCNNGG 2 cut(s) 311, 581
Bsc4I CCNNNNNNNGG 2 cut(s) 162, 534
Bse118I RCCGGY 1 cut(s) 62
Bse1I ACTGG 2 cut(s) 43, 528
Bse21I CCTNAGG 1 cut(s) 248
Bse3DI GCAATG 1 cut(s) 301
BseBI CCWGG 1 cut(s) 972
BseCI ATCGAT 1 cut(s) 588
BseDI CCNNGG 2 cut(s) 311, 581
BseLI CCNNNNNNNGG 2 cut(s) 162, 534
BseMI GCAATG 1 cut(s) 301
BseMII CTCAG 1 cut(s) 239
BseNI ACTGG 2 cut(s) 43, 528
BseSI GKGCMC 1 cut(s) 150
BseXI GCAGC 1 cut(s) 775
BsgI GTGCAG 2 cut(s) 713, 744
Bsh1236I CGCG 5 cut(s) 158, 160, 171, 195, 205
BshFI GGCC 1 cut(s) 155
BshNI GGYRCC 2 cut(s) 53, 65
BshVI ATCGAT 1 cut(s) 588
BsiHKAI GWGCWC 2 cut(s) 150, 756
BsiHKCI CYCGRG 1 cut(s) 330
BsiSI CCGG 4 cut(s) 63, 69, 80, 1020
BslFI GGGAC 1 cut(s) 1002
BslI CCNNNNNNNGG 2 cut(s) 162, 534
BsmFI GGGAC 1 cut(s) 1002
BsmI GAATGC 1 cut(s) 493
BsnI GGCC 1 cut(s) 155
BsoBI CYCGRG 1 cut(s) 330
Bsp1286I GDGCHC 2 cut(s) 150, 756
Bsp143I GATC 4 cut(s) 243, 585, 589, 646
BspACI CCGC 4 cut(s) 156, 524, 570, 766
BspANI GGCC 1 cut(s) 155
BspCNI CTCAG 1 cut(s) 240
BspDI ATCGAT 1 cut(s) 588
BspFNI CGCG 5 cut(s) 158, 160, 171, 195, 205
BspLI GGNNCC 3 cut(s) 55, 67, 712
BspPI GGATC 3 cut(s) 238, 584, 593
BspT107I GGYRCC 2 cut(s) 53, 65
BsrDI GCAATG 1 cut(s) 301
BsrFI RCCGGY 1 cut(s) 62
BsrI ACTGG 2 cut(s) 43, 528
BssAI RCCGGY 1 cut(s) 62
BssECI CCNNGG 2 cut(s) 311, 581
BssMI GATC 4 cut(s) 243, 585, 589, 646
BssNAI GTATAC 1 cut(s) 915
BssNI GRCGYC 3 cut(s) 54, 66, 1015
BssT1I CCWWGG 1 cut(s) 581
Bst1107I GTATAC 1 cut(s) 915
Bst2UI CCWGG 1 cut(s) 972
Bst4CI ACNGT 1 cut(s) 627
BstACI GRCGYC 3 cut(s) 54, 66, 1015
BstAPI GCANNNNNTGC 1 cut(s) 573
BstBAI YACGTR 4 cut(s) 151, 552, 644, 888
BstC8I GCNNGC 6 cut(s) 64, 77, 207, 574, 578, 614
BstDEI CTNAG 1 cut(s) 248
BstFNI CGCG 5 cut(s) 158, 160, 171, 195, 205
BstH2I RGCGCY 2 cut(s) 57, 69
BstHHI GCGC 7 cut(s) 56, 68, 160, 171, 195, 205, 965
BstKTI GATC 4 cut(s) 246, 588, 592, 649
BstMBI GATC 4 cut(s) 243, 585, 589, 646
BstMWI GCNNNNNNNGC 7 cut(s) 72, 166, 573, 691, 760, 829, 849
BstNI CCWGG 1 cut(s) 972
BstNSI RCATGY 2 cut(s) 443, 775
BstSCI CCNGG 2 cut(s) 970, 1018
BstSLI GKGCMC 1 cut(s) 150
BstSNI TACGTA 1 cut(s) 888
BstUI CGCG 5 cut(s) 158, 160, 171, 195, 205
BstV1I GCAGC 1 cut(s) 775
BstXI CCANNNNNNTGG 1 cut(s) 50
BstZ17I GTATAC 1 cut(s) 915
Bsu15I ATCGAT 1 cut(s) 588
Bsu36I CCTNAGG 1 cut(s) 248
BsuRI GGCC 1 cut(s) 155
BsuTUI ATCGAT 1 cut(s) 588
BtgZI GCGATG 1 cut(s) 420
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 3 cut(s) 138, 370, 535
Cac8I GCNNGC 6 cut(s) 64, 77, 207, 574, 578, 614
CfoI GCGC 7 cut(s) 56, 68, 160, 171, 195, 205, 965
Cfr10I RCCGGY 1 cut(s) 62
Cfr13I GGNCC 2 cut(s) 176, 213
ClaI ATCGAT 1 cut(s) 588
CseI GACGC 1 cut(s) 1004
Csp6I GTAC 3 cut(s) 323, 623, 769
CspCI CAANNNNNGTGG 2 cut(s) 978, 1013
CviAII CATG 7 cut(s) 406, 440, 482, 772, 824, 844, 865
CviQI GTAC 3 cut(s) 323, 623, 769
DdeI CTNAG 1 cut(s) 248
DinI GGCGCC 2 cut(s) 55, 67
DpnI GATC 4 cut(s) 245, 587, 591, 648
DpnII GATC 4 cut(s) 243, 585, 589, 646
EaeI YGGCCR 1 cut(s) 153
Ecl136II GAGCTC 1 cut(s) 754
Eco105I TACGTA 1 cut(s) 888
Eco130I CCWWGG 1 cut(s) 581
Eco24I GRGCYC 1 cut(s) 756
Eco47I GGWCC 2 cut(s) 176, 213
Eco53kI GAGCTC 1 cut(s) 754
Eco72I CACGTG 3 cut(s) 151, 552, 644
Eco81I CCTNAGG 1 cut(s) 248
Eco88I CYCGRG 1 cut(s) 330
EcoICRI GAGCTC 1 cut(s) 754
EcoRII CCWGG 1 cut(s) 970
EcoT14I CCWWGG 1 cut(s) 581
EcoT22I ATGCAT 2 cut(s) 411, 495
EcoT38I GRGCYC 1 cut(s) 756
EgeI GGCGCC 2 cut(s) 55, 67
EheI GGCGCC 2 cut(s) 55, 67
ErhI CCWWGG 1 cut(s) 581
FaeI CATG 7 cut(s) 409, 443, 485, 775, 827, 847, 868
FaqI GGGAC 1 cut(s) 1002
FatI CATG 7 cut(s) 405, 439, 481, 771, 823, 843, 864
FauI CCCGC 1 cut(s) 531
FblI GTMKAC 1 cut(s) 914
Fnu4HI GCNGC 2 cut(s) 156, 764
FriOI GRGCYC 1 cut(s) 756
Fsp4HI GCNGC 2 cut(s) 156, 764
FspBI CTAG 3 cut(s) 657, 978, 986
GlaI GCGC 7 cut(s) 55, 67, 159, 170, 194, 204, 964
GluI GCNGC 2 cut(s) 156, 764
GsuI CTGGAG 1 cut(s) 954
HaeII RGCGCY 2 cut(s) 57, 69
HaeIII GGCC 1 cut(s) 155
HapII CCGG 4 cut(s) 63, 69, 80, 1020
HgaI GACGC 1 cut(s) 1004
HhaI GCGC 7 cut(s) 56, 68, 160, 171, 195, 205, 965
Hin1I GRCGYC 3 cut(s) 54, 66, 1015
Hin1II CATG 7 cut(s) 409, 443, 485, 775, 827, 847, 868
Hin6I GCGC 7 cut(s) 54, 66, 158, 169, 193, 203, 963
HinP1I GCGC 7 cut(s) 54, 66, 158, 169, 193, 203, 963
HinfI GANTC 4 cut(s) 140, 301, 728, 799
HpaII CCGG 4 cut(s) 63, 69, 80, 1020
HphI GGTGA 3 cut(s) 553, 768, 1032
Hpy166II GTNNAC 6 cut(s) 148, 325, 427, 561, 630, 915
Hpy188I TCNGA 4 cut(s) 312, 715, 733, 1030
Hpy188III TCNNGA 1 cut(s) 247
Hpy8I GTNNAC 6 cut(s) 148, 325, 427, 561, 630, 915
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 3 cut(s) 9, 362, 556
HpyCH4III ACNGT 1 cut(s) 627
HpyCH4IV ACGT 6 cut(s) 150, 265, 551, 643, 701, 887
HpyCH4V TGCA 8 cut(s) 148, 409, 493, 510, 612, 694, 725, 763
HpyF10VI GCNNNNNNNGC 7 cut(s) 72, 166, 573, 691, 760, 829, 849
HpyF3I CTNAG 1 cut(s) 248
HpySE526I ACGT 6 cut(s) 150, 265, 551, 643, 701, 887
Hsp92I GRCGYC 3 cut(s) 54, 66, 1015
Hsp92II CATG 7 cut(s) 409, 443, 485, 775, 827, 847, 868
HspAI GCGC 7 cut(s) 54, 66, 158, 169, 193, 203, 963
KasI GGCGCC 2 cut(s) 53, 65
KroI GCCGGC 1 cut(s) 62
KroNI GCCGGC 1 cut(s) 64
Kzo9I GATC 4 cut(s) 243, 585, 589, 646
LmnI GCTCC 4 cut(s) 525, 716, 751, 861
Lsp1109I GCAGC 1 cut(s) 775
LweI GCATC 2 cut(s) 418, 440
MaeI CTAG 3 cut(s) 657, 978, 986
MaeII ACGT 6 cut(s) 150, 265, 551, 643, 701, 887
MaeIII GTNAC 3 cut(s) 133, 261, 774
MalI GATC 4 cut(s) 245, 587, 591, 648
MboI GATC 4 cut(s) 243, 585, 589, 646
MboII GAAGA 1 cut(s) 97
MfeI CAATTG 1 cut(s) 278
MhlI GDGCHC 2 cut(s) 150, 756
MluCI AATT 5 cut(s) 37, 218, 278, 286, 357
Mly113I GGCGCC 2 cut(s) 54, 66
MmeI TCCRAC 1 cut(s) 738
MnlI CCTC 8 cut(s) 65, 243, 306, 326, 528, 603, 978, 1004
Mph1103I ATGCAT 2 cut(s) 411, 495
MreI CGCCGGCG 1 cut(s) 62
MroNI GCCGGC 1 cut(s) 62
MseI TTAA 2 cut(s) 105, 378
MslI CAYNNNNRTG 1 cut(s) 554
MspA1I CMGCKG 1 cut(s) 766
MspI CCGG 4 cut(s) 63, 69, 80, 1020
MspR9I CCNGG 2 cut(s) 972, 1020
MunI CAATTG 1 cut(s) 278
Mva1269I GAATGC 1 cut(s) 493
MvaI CCWGG 1 cut(s) 972
MvnI CGCG 5 cut(s) 158, 160, 171, 195, 205
MwoI GCNNNNNNNGC 7 cut(s) 72, 166, 573, 691, 760, 829, 849
NaeI GCCGGC 1 cut(s) 64
NarI GGCGCC 2 cut(s) 54, 66
NciI CCSGG 1 cut(s) 1020
NdeII GATC 4 cut(s) 243, 585, 589, 646
NgoMIV GCCGGC 1 cut(s) 62
NlaIII CATG 7 cut(s) 409, 443, 485, 775, 827, 847, 868
NlaIV GGNNCC 3 cut(s) 55, 67, 712
NmuCI GTSAC 3 cut(s) 133, 261, 774
NsiI ATGCAT 2 cut(s) 411, 495
NspI RCATGY 2 cut(s) 443, 775
PaeR7I CTCGAG 1 cut(s) 330
PciI ACATGT 1 cut(s) 771
PctI GAATGC 1 cut(s) 493
PdiI GCCGGC 1 cut(s) 64
PfeI GAWTC 4 cut(s) 140, 301, 728, 799
PkrI GCNGC 2 cut(s) 157, 765
PluTI GGCGCC 2 cut(s) 57, 69
PmaCI CACGTG 3 cut(s) 151, 552, 644
PmlI CACGTG 3 cut(s) 151, 552, 644
Ppu21I YACGTR 4 cut(s) 151, 552, 644, 888
PscI ACATGT 1 cut(s) 771
Psp124BI GAGCTC 1 cut(s) 756
Psp6I CCWGG 1 cut(s) 970
PspCI CACGTG 3 cut(s) 151, 552, 644
PspGI CCWGG 1 cut(s) 970
PspN4I GGNNCC 3 cut(s) 55, 67, 712
PspPI GGNCC 2 cut(s) 176, 213
PspXI VCTCGAGB 1 cut(s) 330
RsaI GTAC 3 cut(s) 324, 624, 770
RsaNI GTAC 3 cut(s) 323, 623, 769
RseI CAYNNNNRTG 1 cut(s) 554
SacI GAGCTC 1 cut(s) 756
SaqAI TTAA 2 cut(s) 105, 378
SatI GCNGC 2 cut(s) 156, 764
Sau3AI GATC 4 cut(s) 243, 585, 589, 646
Sau96I GGNCC 2 cut(s) 176, 213
ScrFI CCNGG 2 cut(s) 972, 1020
SduI GDGCHC 2 cut(s) 150, 756
SfaNI GCATC 2 cut(s) 418, 440
SfoI GGCGCC 2 cut(s) 55, 67
Sfr274I CTCGAG 1 cut(s) 330
SgrAI CRCCGGYG 1 cut(s) 62
SinI GGWCC 2 cut(s) 176, 213
SlaI CTCGAG 1 cut(s) 330
SmiMI CAYNNNNRTG 1 cut(s) 554
SmlI CTYRAG 2 cut(s) 330, 818
SmoI CTYRAG 2 cut(s) 330, 818
SnaBI TACGTA 1 cut(s) 888
Sse9I AATT 5 cut(s) 37, 218, 278, 286, 357
SsiI CCGC 4 cut(s) 156, 524, 570, 766
SspDI GGCGCC 2 cut(s) 53, 65
SspI AATATT 2 cut(s) 98, 120
SspMI CTAG 3 cut(s) 657, 978, 986
SstI GAGCTC 1 cut(s) 756
StyD4I CCNGG 2 cut(s) 970, 1018
StyI CCWWGG 1 cut(s) 581
TaaI ACNGT 1 cut(s) 627
TaiI ACGT 6 cut(s) 153, 268, 554, 646, 704, 890
TaqI TCGA 2 cut(s) 331, 588
TasI AATT 5 cut(s) 37, 218, 278, 286, 357
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 4 cut(s) 140, 301, 728, 799
Tru1I TTAA 2 cut(s) 105, 378
Tru9I TTAA 2 cut(s) 105, 378
TscAI CASTG 3 cut(s) 138, 370, 535
TseFI GTSAC 3 cut(s) 133, 261, 774
TseI GCWGC 1 cut(s) 763
Tsp45I GTSAC 3 cut(s) 133, 261, 774
TspDTI ATGAA 6 cut(s) 293, 431, 470, 840, 860, 888
TspGWI ACGGA 4 cut(s) 91, 129, 152, 168
TspRI CASTG 3 cut(s) 138, 370, 535
VneI GTGCAC 1 cut(s) 146
VpaK11BI GGWCC 2 cut(s) 176, 213
XapI RAATTY 2 cut(s) 37, 218
XceI RCATGY 2 cut(s) 443, 775
XhoI CTCGAG 1 cut(s) 330
XmiI GTMKAC 1 cut(s) 914
XspI CTAG 3 cut(s) 657, 978, 986
Zsp2I ATGCAT 2 cut(s) 411, 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.