pycom02g17600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000513
Physical Location & Seq
Forward (+)
15763345 .. 15764248
904 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g17600.1

Sequence Viewer

Length: 300 bp
ATGCACCCACATCCTTTCCCTTGCCCTGTACCCCCCCCATCCCGTGCCCAGTTCCCTTCCCATTTTCCCCTCCATTCACATATCCATGCTCGTCAGGCTCGTAGGAGTCCAATCATACCCATTTCAGTTCAAGCTTGTAGGAAGCTTGGTGAGGTCCCTAGAAGGCTCGGGGTGGTTCGTTTGAAGGTTTTGGACGTCGGGATCACGAGTTTCGAGGTTGGCCGGAGTTGGGGTGATTTTCCAGTTGTTTCGCATATAGGTGATACCTATCCCGAGGACGAGCGTGGTCACTCGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.14

Weight (kDa)

10.25

Isoelectric Point (pI)

78.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 198
AclWI GGATC 1 cut(s) 209
AcoI YGGCCR 1 cut(s) 220
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 1 cut(s) 30
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 2 cut(s) 131, 184
AluBI AGCT 2 cut(s) 134, 145
AluI AGCT 2 cut(s) 134, 145
AlwI GGATC 1 cut(s) 209
Ama87I CYCGRG 3 cut(s) 167, 272, 292
AoxI GGCC 1 cut(s) 220
AspS9I GGNCC 1 cut(s) 154
AsuHPI GGTGA 3 cut(s) 161, 245, 272
AvaI CYCGRG 3 cut(s) 167, 272, 292
AvaII GGWCC 1 cut(s) 154
BaeGI GKGCMC 1 cut(s) 49
BauI CACGAG 1 cut(s) 205
BccI CCATC 1 cut(s) 46
BfaI CTAG 1 cut(s) 159
Bme18I GGWCC 1 cut(s) 154
BmeT110I CYCGRG 3 cut(s) 167, 272, 292
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 1 cut(s) 156
BmrI ACTGGG 1 cut(s) 43
BmuI ACTGGG 1 cut(s) 43
BsaBI GATNNNNATC 1 cut(s) 267
BsaHI GRCGYC 1 cut(s) 195
BsaJI CCNNGG 1 cut(s) 273
BsaXI ACNNNNNCTCC 2 cut(s) 217, 247
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse1I ACTGG 2 cut(s) 49, 242
Bse8I GATNNNNATC 1 cut(s) 267
BseDI CCNNGG 1 cut(s) 273
BseGI GGATG 2 cut(s) 10, 38
BseJI GATNNNNATC 1 cut(s) 267
BseLI CCNNNNNNNGG 1 cut(s) 229
BseNI ACTGG 2 cut(s) 49, 242
BseSI GKGCMC 1 cut(s) 49
BshFI GGCC 1 cut(s) 222
BsiHKCI CYCGRG 3 cut(s) 167, 272, 292
BsiSI CCGG 1 cut(s) 223
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 1 cut(s) 229
BsmFI GGGAC 1 cut(s) 140
BsnI GGCC 1 cut(s) 222
BsoBI CYCGRG 3 cut(s) 167, 272, 292
Bsp1286I GDGCHC 1 cut(s) 49
Bsp143I GATC 1 cut(s) 201
BspANI GGCC 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 156
BspPI GGATC 1 cut(s) 209
BsrI ACTGG 2 cut(s) 49, 242
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 1 cut(s) 201
BssNI GRCGYC 1 cut(s) 195
BssSI CACGAG 1 cut(s) 205
Bst2BI CACGAG 1 cut(s) 205
BstACI GRCGYC 1 cut(s) 195
BstF5I GGATG 2 cut(s) 10, 38
BstKTI GATC 1 cut(s) 204
BstMBI GATC 1 cut(s) 201
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstSLI GKGCMC 1 cut(s) 49
BsuRI GGCC 1 cut(s) 222
BtsCI GGATG 2 cut(s) 10, 38
Cfr13I GGNCC 1 cut(s) 154
Csp6I GTAC 1 cut(s) 29
CviAII CATG 1 cut(s) 86
CviJI RGCY 5 cut(s) 98, 134, 145, 166, 222
CviKI_1 RGCY 5 cut(s) 98, 134, 145, 166, 222
CviQI GTAC 1 cut(s) 29
DpnI GATC 1 cut(s) 203
DpnII GATC 1 cut(s) 201
EaeI YGGCCR 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 154
Eco88I CYCGRG 3 cut(s) 167, 272, 292
EcoO109I RGGNCCY 1 cut(s) 154
FaeI CATG 1 cut(s) 89
FaiI YATR 5 cut(s) 81, 87, 116, 255, 257
FaqI GGGAC 1 cut(s) 140
FatI CATG 1 cut(s) 85
FokI GGATG 1 cut(s) 25
FspBI CTAG 1 cut(s) 159
HaeIII GGCC 1 cut(s) 222
HapII CCGG 1 cut(s) 223
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 1 cut(s) 89
HindIII AAGCTT 2 cut(s) 132, 143
HinfI GANTC 1 cut(s) 106
HpaII CCGG 1 cut(s) 223
HphI GGTGA 3 cut(s) 161, 245, 272
Hpy188III TCNNGA 3 cut(s) 199, 205, 272
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 3 cut(s) 66, 156, 178
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
HpySE526I ACGT 1 cut(s) 195
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 1 cut(s) 89
Kzo9I GATC 1 cut(s) 201
LpnPI CCDG 5 cut(s) 39, 62, 80, 236, 255
MaeI CTAG 1 cut(s) 159
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 1 cut(s) 287
MalI GATC 1 cut(s) 203
MboI GATC 1 cut(s) 201
MhlI GDGCHC 1 cut(s) 49
MlyI GAGTC 1 cut(s) 115
MnlI CCTC 5 cut(s) 80, 145, 208, 268, 288
MslI CAYNNNNRTG 2 cut(s) 84, 258
MspI CCGG 1 cut(s) 223
MwoI GCNNNNNNNGC 1 cut(s) 95
NdeII GATC 1 cut(s) 201
NlaIII CATG 1 cut(s) 89
NlaIV GGNNCC 1 cut(s) 156
NmuCI GTSAC 1 cut(s) 287
PaeR7I CTCGAG 1 cut(s) 292
PcsI WCGNNNNNNNCGW 1 cut(s) 97
PleI GAGTC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 114
PpuMI RGGWCCY 1 cut(s) 154
Psp5II RGGWCCY 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 156
PspPI GGNCC 1 cut(s) 154
PspPPI RGGWCCY 1 cut(s) 154
PspXI VCTCGAGB 1 cut(s) 292
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
RseI CAYNNNNRTG 2 cut(s) 84, 258
Sau3AI GATC 1 cut(s) 201
Sau96I GGNCC 1 cut(s) 154
SchI GAGTC 1 cut(s) 115
SduI GDGCHC 1 cut(s) 49
SetI ASST 9 cut(s) 136, 147, 156, 189, 198, 219, 262, 269, 299
Sfr274I CTCGAG 1 cut(s) 292
SinI GGWCC 1 cut(s) 154
SlaI CTCGAG 1 cut(s) 292
SmiMI CAYNNNNRTG 2 cut(s) 84, 258
SmlI CTYRAG 1 cut(s) 292
SmoI CTYRAG 1 cut(s) 292
SspMI CTAG 1 cut(s) 159
TaiI ACGT 1 cut(s) 198
TaqI TCGA 2 cut(s) 213, 293
TseFI GTSAC 1 cut(s) 287
Tsp45I GTSAC 1 cut(s) 287
VpaK11BI GGWCC 1 cut(s) 154
XhoI CTCGAG 1 cut(s) 292
XspI CTAG 1 cut(s) 159
ZraI GACGTC 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.