pycom01g10660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000513
Physical Location & Seq
Reverse (-)
11452524 .. 11453531
1008 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g10660.1

Sequence Viewer

Length: 381 bp
ATGTTTTGGGTTTTGTTGGCATATTTTGAGCCACACACACTCTCCCACACTCTACACCCTTTTCTCCCTATCCCTGCACCTGTCCCGAGTTCCCTTTCCCATCCCATTTTCCATACAACGAACAAAGTACATATCCATGCTCGTGAGGCTCGTAGGAGTCCAACCATACCCATTTCAGTTCAAGCTTGTAGGAAGCTTGGTGAGGTCCCTAGGAGGCTCGGGGTGGTTCGTTTGAAGGTTTTGGACGTCAGGATCACGAGTTTCGAGGTTGGCCGGAGTTGGGGTGATTTTCCAGTTGTTTCGCATATAGGTGATACCTATCCCGAGGACGAGCGTGGTCACTCGAGGCAGGGGGGCTACGACCCTTCCACTTACCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.29

Weight (kDa)

9.35

Isoelectric Point (pI)

59.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 249
AclWI GGATC 1 cut(s) 260
AcoI YGGCCR 1 cut(s) 271
AcyI GRCGYC 1 cut(s) 246
AfaI GTAC 1 cut(s) 129
AfiI CCNNNNNNNGG 1 cut(s) 280
AgsI TTSAA 2 cut(s) 182, 235
AluBI AGCT 2 cut(s) 185, 196
AluI AGCT 2 cut(s) 185, 196
AlwI GGATC 1 cut(s) 260
Ama87I CYCGRG 4 cut(s) 85, 218, 323, 343
AoxI GGCC 1 cut(s) 271
AspA2I CCTAGG 1 cut(s) 209
AspS9I GGNCC 1 cut(s) 205
AsuHPI GGTGA 3 cut(s) 212, 296, 323
AvaI CYCGRG 4 cut(s) 85, 218, 323, 343
AvaII GGWCC 1 cut(s) 205
AvrII CCTAGG 1 cut(s) 209
BauI CACGAG 2 cut(s) 141, 256
BccI CCATC 1 cut(s) 108
BfaI CTAG 1 cut(s) 210
BlnI CCTAGG 1 cut(s) 209
Bme18I GGWCC 1 cut(s) 205
BmeT110I CYCGRG 4 cut(s) 85, 218, 323, 343
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 1 cut(s) 207
BsaBI GATNNNNATC 1 cut(s) 318
BsaHI GRCGYC 1 cut(s) 246
BsaJI CCNNGG 2 cut(s) 209, 324
BsaXI ACNNNNNCTCC 4 cut(s) 26, 56, 268, 298
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse1I ACTGG 1 cut(s) 293
Bse8I GATNNNNATC 1 cut(s) 318
BseDI CCNNGG 2 cut(s) 209, 324
BseGI GGATG 1 cut(s) 100
BseJI GATNNNNATC 1 cut(s) 318
BseLI CCNNNNNNNGG 1 cut(s) 280
BseNI ACTGG 1 cut(s) 293
BsgI GTGCAG 1 cut(s) 60
BshFI GGCC 1 cut(s) 273
BsiHKCI CYCGRG 4 cut(s) 85, 218, 323, 343
BsiSI CCGG 1 cut(s) 274
BslFI GGGAC 2 cut(s) 68, 191
BslI CCNNNNNNNGG 1 cut(s) 280
BsmFI GGGAC 2 cut(s) 68, 191
BsnI GGCC 1 cut(s) 273
BsoBI CYCGRG 4 cut(s) 85, 218, 323, 343
Bsp143I GATC 1 cut(s) 252
BspANI GGCC 1 cut(s) 273
BspLI GGNNCC 1 cut(s) 207
BspPI GGATC 1 cut(s) 260
BsrI ACTGG 1 cut(s) 293
BssECI CCNNGG 2 cut(s) 209, 324
BssMI GATC 1 cut(s) 252
BssNI GRCGYC 1 cut(s) 246
BssSI CACGAG 2 cut(s) 141, 256
BssT1I CCWWGG 1 cut(s) 209
Bst2BI CACGAG 2 cut(s) 141, 256
BstACI GRCGYC 1 cut(s) 246
BstF5I GGATG 1 cut(s) 100
BstKTI GATC 1 cut(s) 255
BstMBI GATC 1 cut(s) 252
BstMWI GCNNNNNNNGC 1 cut(s) 146
BsuRI GGCC 1 cut(s) 273
BtsCI GGATG 1 cut(s) 100
Cfr13I GGNCC 1 cut(s) 205
Csp6I GTAC 1 cut(s) 128
CviAII CATG 1 cut(s) 137
CviJI RGCY 7 cut(s) 31, 149, 185, 196, 217, 273, 357
CviKI_1 RGCY 7 cut(s) 31, 149, 185, 196, 217, 273, 357
CviQI GTAC 1 cut(s) 128
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
EaeI YGGCCR 1 cut(s) 271
Eco130I CCWWGG 1 cut(s) 209
Eco47I GGWCC 1 cut(s) 205
Eco88I CYCGRG 4 cut(s) 85, 218, 323, 343
EcoO109I RGGNCCY 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 209
ErhI CCWWGG 1 cut(s) 209
FaeI CATG 1 cut(s) 140
FaiI YATR 7 cut(s) 22, 114, 132, 138, 167, 306, 308
FaqI GGGAC 2 cut(s) 68, 191
FatI CATG 1 cut(s) 136
FokI GGATG 1 cut(s) 87
FspBI CTAG 1 cut(s) 210
HaeIII GGCC 1 cut(s) 273
HapII CCGG 1 cut(s) 274
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 1 cut(s) 140
HindIII AAGCTT 2 cut(s) 183, 194
HinfI GANTC 1 cut(s) 157
HpaII CCGG 1 cut(s) 274
HphI GGTGA 3 cut(s) 212, 296, 323
Hpy188III TCNNGA 5 cut(s) 85, 143, 250, 256, 323
HpyAV CCTTC 2 cut(s) 229, 375
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 1 cut(s) 77
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpySE526I ACGT 1 cut(s) 246
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 1 cut(s) 140
Kzo9I GATC 1 cut(s) 252
LpnPI CCDG 6 cut(s) 87, 93, 235, 287, 306, 335
MaeI CTAG 1 cut(s) 210
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 1 cut(s) 338
MalI GATC 1 cut(s) 254
MboI GATC 1 cut(s) 252
MlyI GAGTC 1 cut(s) 166
MmeI TCCRAC 1 cut(s) 185
MnlI CCTC 6 cut(s) 139, 196, 207, 259, 319, 339
MslI CAYNNNNRTG 3 cut(s) 135, 141, 309
MspI CCGG 1 cut(s) 274
MwoI GCNNNNNNNGC 1 cut(s) 146
NdeII GATC 1 cut(s) 252
NlaIII CATG 1 cut(s) 140
NlaIV GGNNCC 1 cut(s) 207
NmuCI GTSAC 1 cut(s) 338
PaeR7I CTCGAG 1 cut(s) 343
PcsI WCGNNNNNNNCGW 1 cut(s) 148
PleI GAGTC 1 cut(s) 165
PpsI GAGTC 1 cut(s) 165
PpuMI RGGWCCY 1 cut(s) 205
Psp5II RGGWCCY 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 207
PspPI GGNCC 1 cut(s) 205
PspPPI RGGWCCY 1 cut(s) 205
PspXI VCTCGAGB 1 cut(s) 343
RsaI GTAC 1 cut(s) 129
RsaNI GTAC 1 cut(s) 128
RseI CAYNNNNRTG 3 cut(s) 135, 141, 309
Sau3AI GATC 1 cut(s) 252
Sau96I GGNCC 1 cut(s) 205
SchI GAGTC 1 cut(s) 166
Sfr274I CTCGAG 1 cut(s) 343
SinI GGWCC 1 cut(s) 205
SlaI CTCGAG 1 cut(s) 343
SmiMI CAYNNNNRTG 3 cut(s) 135, 141, 309
SmlI CTYRAG 1 cut(s) 343
SmoI CTYRAG 1 cut(s) 343
SspMI CTAG 1 cut(s) 210
StyI CCWWGG 1 cut(s) 209
TaiI ACGT 1 cut(s) 249
TaqI TCGA 2 cut(s) 264, 344
TatI WGTACW 1 cut(s) 127
TseFI GTSAC 1 cut(s) 338
Tsp45I GTSAC 1 cut(s) 338
VpaK11BI GGWCC 1 cut(s) 205
XhoI CTCGAG 1 cut(s) 343
XmaJI CCTAGG 1 cut(s) 209
XspI CTAG 1 cut(s) 210
ZraI GACGTC 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.