Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0000513

Physical Location & Seq

Genomic Coordinates Reverse (-)

3578217 .. 3579376

Gene Structure 1160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g04610.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTATCTCGTGATTTTTCGTTGTGTAGTTGTTCTTTTTGGCTTGGTGTGGCTGGTTTTGCACCACACACTCCTCCCCACACTCACCCTCATTGTTTCCTCCTTTCCCTGCACCTGTCCTGAGTCCCCCTTCTCATCCCATTCTCCATACACAATCCAAGCACATATTCAGACTCGTGAGGCTTGTAGGAGTCCAACCATACCCATTTCAGTTCAAGCTTGTAGGAAGCTTGGTGAGGTCCCTAGGAGGCTCGGGGTGGTTCGTTTGAAGGTTTTGGACGTCGGGATCACGAGTTTCGAGGTTGGCCGGAGTTGGGGTGATTTTGCAGTTGTTTCGCATATAGGTGATACCTATCCCGAGGACGAGCGTGGTCACTCGAGGCAGGGGGGGTTACGACCCTTCCACATACCAGTGAGTGGGCTTTTGGTTTTCCGTATATACCTATATACTTATATTTTCCCAGAAATTGTTCTAAATGTTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

18.18

Weight (kDa)

8.68

Isoelectric Point (pI)

58.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000513)

Species	Orthologous Gene IDs
malus_domestica	MD00G1165900.v1.1 MD01G1149400.v1.1 MD02G1188500.v1.1 MD06G1074500.v1.1 MD06G1183900.v1.1 MD08G1220300.v1.1 MD11G1317300.v1.1 MD12G1033900.v1.1 MD13G1075700.v1.1 MD13G1253200.v1.1 MD16G1023900.v1.1
pyrus_communis	pycom01g00140 pycom01g00540 pycom01g00600 pycom01g00660 pycom01g00920 pycom01g00970 pycom01g02740 pycom01g04610 pycom01g10660 pycom01g21320 pycom02g07390 pycom02g17600 pycom02g18670 pycom02g18770 pycom03g02770 pycom03g15990 pycom03g21130 pycom04g16620 pycom04g21450 pycom05g06020 pycom05g08170 pycom05g13560 pycom05g22750 pycom05g23690 pycom05g23730 pycom05g23760 pycom05g23950 pycom05g24030 pycom07g12530 pycom07g12550 pycom08g01040 pycom08g16160 pycom10g03920 pycom11g13260 pycom11g13940 pycom11g16660 pycom12556g00120 pycom12661g00080 pycom12g07880 pycom13g05260 pycom13g11350 pycom13g15930 pycom13g23350 pycom13g23690 pycom13g23750 pycom13g23880 pycom13g24500 pycom13g24620 pycom13g26020 pycom13g26300 pycom13g27320 pycom13g28360 pycom14g12840 pycom15g17240 pycom15g31400 pycom15g32660 pycom16g21180 pycom16g21190 pycom16g22580 pycom16g24640 pycom16g26060 pycom16g26400 pycom16g26410 pycom17g03930 pycom17g16310 pycom17g16320 pycom17g16920 pycom420g00790 pycom520g00370 pycom520g00530 pycom520g00830 pycom520g00840 pycom520g00880 pycom520g00930 pycom808g00600
rosa_chinensis	RchiOBHm_Chr2g0089701

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	282
AccB7I	CCANNNNNTGG	1 cut(s)	416
AclWI	GGATC	1 cut(s)	293
AcoI	YGGCCR	1 cut(s)	304
AcyI	GRCGYC	1 cut(s)	279
AfiI	CCNNNNNNNGG	2 cut(s)	313, 416
AgsI	TTSAA	2 cut(s)	215, 268
AjuI	GAANNNNNNNTTGG	2 cut(s)	150, 182
AluBI	AGCT	2 cut(s)	218, 229
AluI	AGCT	2 cut(s)	218, 229
AlwI	GGATC	1 cut(s)	293
Ama87I	CYCGRG	3 cut(s)	251, 356, 376
AoxI	GGCC	1 cut(s)	304
Asp700I	GAANNNNTTC	1 cut(s)	468
AspA2I	CCTAGG	1 cut(s)	242
AspS9I	GGNCC	1 cut(s)	238
AsuHPI	GGTGA	4 cut(s)	76, 245, 329, 356
AvaI	CYCGRG	3 cut(s)	251, 356, 376
AvaII	GGWCC	1 cut(s)	238
AvrII	CCTAGG	1 cut(s)	242
BauI	CACGAG	3 cut(s)	8, 174, 289
BcgI	CGANNNNNNTGC	2 cut(s)	315, 349
BfaI	CTAG	1 cut(s)	243
BlnI	CCTAGG	1 cut(s)	242
Bme18I	GGWCC	1 cut(s)	238
BmeT110I	CYCGRG	3 cut(s)	251, 356, 376
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	240
BsaBI	GATNNNNATC	1 cut(s)	351
BsaHI	GRCGYC	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	242, 357
BsaXI	ACNNNNNCTCC	2 cut(s)	301, 331
Bsc4I	CCNNNNNNNGG	2 cut(s)	313, 416
Bse1I	ACTGG	1 cut(s)	410
Bse8I	GATNNNNATC	1 cut(s)	351
BseDI	CCNNGG	2 cut(s)	242, 357
BseGI	GGATG	1 cut(s)	134
BseJI	GATNNNNATC	1 cut(s)	351
BseLI	CCNNNNNNNGG	2 cut(s)	313, 416
BseMII	CTCAG	1 cut(s)	111
BseNI	ACTGG	1 cut(s)	410
BseRI	GAGGAG	1 cut(s)	62
BsgI	GTGCAG	1 cut(s)	94
BshFI	GGCC	1 cut(s)	306
BsiHKCI	CYCGRG	3 cut(s)	251, 356, 376
BsiSI	CCGG	1 cut(s)	307
BslFI	GGGAC	2 cut(s)	109, 224
BslI	CCNNNNNNNGG	2 cut(s)	313, 416
BsmFI	GGGAC	2 cut(s)	109, 224
BsnI	GGCC	1 cut(s)	306
BsoBI	CYCGRG	3 cut(s)	251, 356, 376
Bsp143I	GATC	1 cut(s)	285
BspANI	GGCC	1 cut(s)	306
BspCNI	CTCAG	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	240
BspPI	GGATC	1 cut(s)	293
BsrI	ACTGG	1 cut(s)	410
BssECI	CCNNGG	2 cut(s)	242, 357
BssMI	GATC	1 cut(s)	285
BssNI	GRCGYC	1 cut(s)	279
BssSI	CACGAG	3 cut(s)	8, 174, 289
BssT1I	CCWWGG	1 cut(s)	242
Bst2BI	CACGAG	3 cut(s)	8, 174, 289
BstACI	GRCGYC	1 cut(s)	279
BstDEI	CTNAG	1 cut(s)	120
BstF5I	GGATG	1 cut(s)	134
BstKTI	GATC	1 cut(s)	288
BstMBI	GATC	1 cut(s)	285
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BsuRI	GGCC	1 cut(s)	306
BtsCI	GGATG	1 cut(s)	134
BtsIMutI	CAGTG	1 cut(s)	417
Cfr13I	GGNCC	1 cut(s)	238
CviJI	RGCY	8 cut(s)	42, 52, 182, 218, 229, 250, 306, 421
CviKI_1	RGCY	8 cut(s)	42, 52, 182, 218, 229, 250, 306, 421
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	1 cut(s)	287
DpnII	GATC	1 cut(s)	285
EaeI	YGGCCR	1 cut(s)	304
Eco130I	CCWWGG	1 cut(s)	242
Eco47I	GGWCC	1 cut(s)	238
Eco88I	CYCGRG	3 cut(s)	251, 356, 376
EcoO109I	RGGNCCY	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	242
ErhI	CCWWGG	1 cut(s)	242
FaqI	GGGAC	2 cut(s)	109, 224
FokI	GGATG	1 cut(s)	121
FspBI	CTAG	1 cut(s)	243
HaeIII	GGCC	1 cut(s)	306
HapII	CCGG	1 cut(s)	307
Hin1I	GRCGYC	1 cut(s)	279
HindIII	AAGCTT	2 cut(s)	216, 227
HinfI	GANTC	3 cut(s)	122, 172, 190
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	4 cut(s)	76, 245, 329, 356
Hpy188I	TCNGA	1 cut(s)	171
Hpy188III	TCNNGA	6 cut(s)	10, 119, 176, 283, 289, 356
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	3 cut(s)	139, 262, 409
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	3 cut(s)	61, 111, 326
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	1 cut(s)	120
HpySE526I	ACGT	1 cut(s)	279
Hsp92I	GRCGYC	1 cut(s)	279
Kzo9I	GATC	1 cut(s)	285
LpnPI	CCDG	8 cut(s)	38, 121, 127, 132, 320, 368, 423, 474
MaeI	CTAG	1 cut(s)	243
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	2 cut(s)	371, 390
MalI	GATC	1 cut(s)	287
MboI	GATC	1 cut(s)	285
MluCI	AATT	1 cut(s)	465
MlyI	GAGTC	3 cut(s)	131, 166, 199
MmeI	TCCRAC	1 cut(s)	218
MnlI	CCTC	9 cut(s)	83, 98, 109, 172, 229, 240, 292, 352, 372
MroXI	GAANNNNTTC	1 cut(s)	468
MslI	CAYNNNNRTG	2 cut(s)	342, 410
MspI	CCGG	1 cut(s)	307
MwoI	GCNNNNNNNGC	1 cut(s)	58
NdeII	GATC	1 cut(s)	285
NlaIV	GGNNCC	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	371
PaeR7I	CTCGAG	1 cut(s)	376
PdmI	GAANNNNTTC	1 cut(s)	468
PflMI	CCANNNNNTGG	1 cut(s)	416
PleI	GAGTC	3 cut(s)	130, 166, 198
PpsI	GAGTC	3 cut(s)	130, 166, 198
PpuMI	RGGWCCY	1 cut(s)	238
Psp5II	RGGWCCY	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	1 cut(s)	238
PspPPI	RGGWCCY	1 cut(s)	238
PspXI	VCTCGAGB	1 cut(s)	376
RseI	CAYNNNNRTG	2 cut(s)	342, 410
Sau3AI	GATC	1 cut(s)	285
Sau96I	GGNCC	1 cut(s)	238
SchI	GAGTC	3 cut(s)	131, 166, 199
Sfr274I	CTCGAG	1 cut(s)	376
SinI	GGWCC	1 cut(s)	238
SlaI	CTCGAG	1 cut(s)	376
SmiMI	CAYNNNNRTG	2 cut(s)	342, 410
SmlI	CTYRAG	1 cut(s)	376
SmoI	CTYRAG	1 cut(s)	376
Sse9I	AATT	1 cut(s)	465
SspMI	CTAG	1 cut(s)	243
StyI	CCWWGG	1 cut(s)	242
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	2 cut(s)	297, 377
TasI	AATT	1 cut(s)	465
TscAI	CASTG	1 cut(s)	417
TseFI	GTSAC	1 cut(s)	371
Tsp45I	GTSAC	1 cut(s)	371
TspGWI	ACGGA	1 cut(s)	422
TspRI	CASTG	1 cut(s)	417
Van91I	CCANNNNNTGG	1 cut(s)	416
VpaK11BI	GGWCC	1 cut(s)	238
XhoI	CTCGAG	1 cut(s)	376
XmaJI	CCTAGG	1 cut(s)	242
XmnI	GAANNNNTTC	1 cut(s)	468
XspI	CTAG	1 cut(s)	243
ZraI	GACGTC	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.