pycom13g15930

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000513
Physical Location & Seq
Reverse (-)
11737761 .. 11739707
1947 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g15930.2

Sequence Viewer

Length: 351 bp
ATGTGCTTAGGAAATGACCTTTTTACCCCTAGTTGGTTTTCGTATTATTGTTTTTGGTTACTTTGTGTGGTGTTGGCAAGCTTTGGGGCCACACACACACACCTGCACATACACTGTCTCTCTTCACCCTCTCTCTGTCTCTGTCCCGTCATTTTCAGATGTGTTGGTGAGGTCCCAAGGAGCCTCGGAGTGCTTCGTTGGACAAAATTGGACGTCGGGATCGTCCTGCTCGAAGTTGGCCGGTTTTGGAGAATTTGCACAGTTGTTTCGCATCTAGGTGACACGTACCCAGAGGACGAGCGTGCACACGCGAGACAGGGGGGCTACGACCCTTCTACATACCAGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.18

Weight (kDa)

6.56

Isoelectric Point (pI)

45.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 111
AatII GACGTC 1 cut(s) 216
Acc36I ACCTGC 1 cut(s) 111
AccII CGCG 1 cut(s) 311
AclWI GGATC 1 cut(s) 227
AcoI YGGCCR 1 cut(s) 238
AcsI RAATTY 1 cut(s) 252
AcyI GRCGYC 1 cut(s) 213
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 1 cut(s) 33
AflIII ACRYGT 1 cut(s) 282
AluBI AGCT 1 cut(s) 81
AluI AGCT 1 cut(s) 81
Alw21I GWGCWC 1 cut(s) 307
Alw26I GTCTC 3 cut(s) 122, 143, 307
Alw44I GTGCAC 1 cut(s) 303
AlwI GGATC 1 cut(s) 227
AoxI GGCC 2 cut(s) 87, 238
ApaLI GTGCAC 1 cut(s) 303
ApoI RAATTY 1 cut(s) 252
AspS9I GGNCC 2 cut(s) 87, 172
AsuHPI GGTGA 3 cut(s) 117, 179, 290
AvaII GGWCC 1 cut(s) 172
BaeGI GKGCMC 1 cut(s) 307
Bbv12I GWGCWC 1 cut(s) 307
BcoDI GTCTC 3 cut(s) 122, 143, 307
BfaI CTAG 3 cut(s) 30, 275, 349
BfuAI ACCTGC 1 cut(s) 111
Bme18I GGWCC 1 cut(s) 172
BmgT120I GGNCC 2 cut(s) 87, 172
BmiI GGNNCC 3 cut(s) 88, 174, 182
BmsI GCATC 1 cut(s) 280
Bpu10I CCTNAGC 1 cut(s) 7
BsaAI YACGTR 1 cut(s) 285
BsaHI GRCGYC 1 cut(s) 213
BsaJI CCNNGG 2 cut(s) 176, 184
Bsc4I CCNNNNNNNGG 1 cut(s) 33
Bse118I RCCGGY 1 cut(s) 240
Bse1I ACTGG 1 cut(s) 343
BseDI CCNNGG 2 cut(s) 176, 184
BseLI CCNNNNNNNGG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 343
BseSI GKGCMC 1 cut(s) 307
BsgI GTGCAG 1 cut(s) 89
Bsh1236I CGCG 1 cut(s) 311
BshFI GGCC 2 cut(s) 89, 240
BsiHKAI GWGCWC 1 cut(s) 307
BsiSI CCGG 1 cut(s) 241
BslFI GGGAC 2 cut(s) 129, 158
BslI CCNNNNNNNGG 1 cut(s) 33
BsmAI GTCTC 3 cut(s) 122, 143, 307
BsmFI GGGAC 2 cut(s) 129, 158
BsnI GGCC 2 cut(s) 89, 240
Bsp1286I GDGCHC 1 cut(s) 307
Bsp143I GATC 1 cut(s) 219
BspANI GGCC 2 cut(s) 89, 240
BspFNI CGCG 1 cut(s) 311
BspLI GGNNCC 3 cut(s) 88, 174, 182
BspMI ACCTGC 1 cut(s) 111
BspPI GGATC 1 cut(s) 227
BsrFI RCCGGY 1 cut(s) 240
BsrI ACTGG 1 cut(s) 343
BssAI RCCGGY 1 cut(s) 240
BssECI CCNNGG 2 cut(s) 176, 184
BssMI GATC 1 cut(s) 219
BssNI GRCGYC 1 cut(s) 213
BssT1I CCWWGG 1 cut(s) 176
Bst4CI ACNGT 2 cut(s) 116, 262
Bst6I CTCTTC 1 cut(s) 127
BstACI GRCGYC 1 cut(s) 213
BstBAI YACGTR 1 cut(s) 285
BstC8I GCNNGC 2 cut(s) 79, 303
BstDEI CTNAG 1 cut(s) 7
BstFNI CGCG 1 cut(s) 311
BstKTI GATC 1 cut(s) 222
BstMAI GTCTC 3 cut(s) 122, 143, 307
BstMBI GATC 1 cut(s) 219
BstSLI GKGCMC 1 cut(s) 307
BstUI CGCG 1 cut(s) 311
BsuRI GGCC 2 cut(s) 89, 240
BtsIMutI CAGTG 1 cut(s) 112
BveI ACCTGC 1 cut(s) 111
Cac8I GCNNGC 2 cut(s) 79, 303
Cfr10I RCCGGY 1 cut(s) 240
Cfr13I GGNCC 2 cut(s) 87, 172
Csp6I GTAC 1 cut(s) 286
CviJI RGCY 5 cut(s) 81, 89, 183, 240, 324
CviKI_1 RGCY 5 cut(s) 81, 89, 183, 240, 324
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 1 cut(s) 7
DpnI GATC 1 cut(s) 221
DpnII GATC 1 cut(s) 219
EaeI YGGCCR 1 cut(s) 238
Eam1104I CTCTTC 1 cut(s) 127
EarI CTCTTC 1 cut(s) 127
Eco130I CCWWGG 1 cut(s) 176
Eco47I GGWCC 1 cut(s) 172
EcoO109I RGGNCCY 1 cut(s) 172
EcoT14I CCWWGG 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 176
FaiI YATR 2 cut(s) 110, 340
FaqI GGGAC 2 cut(s) 129, 158
FspBI CTAG 3 cut(s) 30, 275, 349
HaeIII GGCC 2 cut(s) 89, 240
HapII CCGG 1 cut(s) 241
Hin1I GRCGYC 1 cut(s) 213
HindIII AAGCTT 1 cut(s) 79
HpaII CCGG 1 cut(s) 241
HphI GGTGA 3 cut(s) 117, 179, 290
Hpy166II GTNNAC 1 cut(s) 305
Hpy188I TCNGA 2 cut(s) 158, 188
Hpy188III TCNNGA 1 cut(s) 217
Hpy8I GTNNAC 1 cut(s) 305
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 1 cut(s) 342
HpyCH4III ACNGT 2 cut(s) 116, 262
HpyCH4IV ACGT 2 cut(s) 213, 284
HpyCH4V TGCA 3 cut(s) 106, 258, 305
HpyF3I CTNAG 1 cut(s) 7
HpySE526I ACGT 2 cut(s) 213, 284
Hsp92I GRCGYC 1 cut(s) 213
Kzo9I GATC 1 cut(s) 219
LmnI GCTCC 1 cut(s) 180
LpnPI CCDG 5 cut(s) 116, 239, 254, 302, 303
LweI GCATC 1 cut(s) 280
MaeI CTAG 3 cut(s) 30, 275, 349
MaeII ACGT 2 cut(s) 213, 284
MaeIII GTNAC 2 cut(s) 57, 278
MalI GATC 1 cut(s) 221
MboI GATC 1 cut(s) 219
MboII GAAGA 1 cut(s) 114
MhlI GDGCHC 1 cut(s) 307
MluCI AATT 2 cut(s) 206, 252
MmeI TCCRAC 1 cut(s) 179
MnlI CCTC 4 cut(s) 139, 163, 194, 286
MslI CAYNNNNRTG 1 cut(s) 276
MspI CCGG 1 cut(s) 241
MvnI CGCG 1 cut(s) 311
NdeII GATC 1 cut(s) 219
NlaIV GGNNCC 3 cut(s) 88, 174, 182
NmuCI GTSAC 1 cut(s) 278
PaqCI CACCTGC 1 cut(s) 111
PcsI WCGNNNNNNNCGW 2 cut(s) 219, 228
Ppu21I YACGTR 1 cut(s) 285
PpuMI RGGWCCY 1 cut(s) 172
Psp5II RGGWCCY 1 cut(s) 172
PspN4I GGNNCC 3 cut(s) 88, 174, 182
PspPI GGNCC 2 cut(s) 87, 172
PspPPI RGGWCCY 1 cut(s) 172
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
RseI CAYNNNNRTG 1 cut(s) 276
Sau3AI GATC 1 cut(s) 219
Sau96I GGNCC 2 cut(s) 87, 172
SduI GDGCHC 1 cut(s) 307
SetI ASST 7 cut(s) 21, 83, 105, 174, 216, 280, 287
SfaNI GCATC 1 cut(s) 280
SinI GGWCC 1 cut(s) 172
SmiMI CAYNNNNRTG 1 cut(s) 276
Sse9I AATT 2 cut(s) 206, 252
SspMI CTAG 3 cut(s) 30, 275, 349
StyI CCWWGG 1 cut(s) 176
TaaI ACNGT 2 cut(s) 116, 262
TaiI ACGT 2 cut(s) 216, 287
TaqI TCGA 1 cut(s) 231
TasI AATT 2 cut(s) 206, 252
TscAI CASTG 1 cut(s) 119
TseFI GTSAC 1 cut(s) 278
Tsp45I GTSAC 1 cut(s) 278
TspRI CASTG 1 cut(s) 119
VneI GTGCAC 1 cut(s) 303
VpaK11BI GGWCC 1 cut(s) 172
XapI RAATTY 1 cut(s) 252
XspI CTAG 3 cut(s) 30, 275, 349
ZraI GACGTC 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.