pycom13g23690

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000513
Physical Location & Seq
Forward (+)
21119155 .. 21120387
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g23690.3

Sequence Viewer

Length: 1008 bp
ATGACGGTTTTGCCCCTAGTATGTTTGTTTCGTTGTGTGGTCGTTTTTGGGCTTTGGTTGGTTGATTTTGGACCACACACATACCCTGCTCATTTCCTCTCTCTCTCTTTGCCATGTCCCGAGACTCTCTCTCTCTCTTTCCTATCCTTTTCATACGGACAACACCACAAACCCTTGAAATCGTCACGGATCGAGGAAACAAACTACATATTCGTGCTCGTGAGGTCCTTAGAAGTCCAACCATACCCATTTCAGGTAAGGATACCTTCGTTTTCACGTCAAACTCGGGATCCACCGATTTGGTCACCGTTCATGCACACGTTAATTCTTGTCCTTAGGAGGCTCGGGGTGGTTCGTTTGAAGGTTTTGGATGTCGGGATCGTGAGTTGCAGGTTTGGCCGGAGTTGGTGGTGTTTTCCCGGCAAGATTCCATGGGTTTTAGTGCTTGAAAGTGATCAAGTTTTGAAATTTTCCCGATTTTCCGGCACCGGCGACAGTGCCGGAGTTTGGTCGGAGAAAATGATGGAATATTCCGTCAGTTTGGACGGAATATTCCTAACGGCGTTAACGGAATCAGTTAGATTTAACGGAATATTCCTAACGGCGTTAATTGACGCCGTCAGTGTGCCAGGCGCGTGTCTGCGCATGGGCGGCGCGTGTGGCCATGCCTTGGCCGATGGGGATGTTCGTGAGGTTGAGTATATCACGTTGGTGTATTCATACTCCCCATTTGAGCATTGTATGAGAAGTTATTTCGTAATGTTGGTTATGTGCTTTAAAATTAACGTATTTATAGTTGTTTCGCATATAGGTGAGACCTATCTCGAGGACGAGTGCGGTCACTCGAGGCAAGGGGGTTACGACCCTTCTACATACCAGTTTTTCCCAAAAAGTGAAATGAAACGTTTATACGTTTATATGCCATATATATACGTGCGTTGGTGCTGCGGACGCACAGGTAAGTGCCAGGTAAGTTATGGTTTATGTTTATGTTCAGTAGTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

336

Amino Acids

38.16

Weight (kDa)

8.31

Isoelectric Point (pI)

47.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 644
Acc36I ACCTGC 1 cut(s) 381
AccB1I GGYRCC 1 cut(s) 485
AccB7I CCANNNNNTGG 1 cut(s) 670
AccII CGCG 2 cut(s) 635, 656
AciI CCGC 3 cut(s) 651, 837, 948
AclI AACGTT 1 cut(s) 904
AclWI GGATC 4 cut(s) 197, 284, 297, 386
AcoI YGGCCR 3 cut(s) 397, 661, 672
AcsI RAATTY 1 cut(s) 467
AcyI GRCGYC 1 cut(s) 615
AfiI CCNNNNNNNGG 3 cut(s) 253, 507, 670
AflIII ACRYGT 1 cut(s) 318
AgsI TTSAA 4 cut(s) 178, 361, 449, 466
AjiI CACGTC 1 cut(s) 278
AjnI CCWGG 2 cut(s) 628, 966
AleI CACNNNNGTG 1 cut(s) 710
Alw21I GWGCWC 1 cut(s) 219
Alw26I GTCTC 2 cut(s) 116, 809
AlwI GGATC 4 cut(s) 197, 284, 297, 386
Ama87I CYCGRG 5 cut(s) 119, 285, 344, 824, 844
AoxI GGCC 3 cut(s) 397, 661, 672
ApeKI GCWGC 1 cut(s) 945
ApoI RAATTY 1 cut(s) 467
AspLEI GCGC 3 cut(s) 635, 645, 656
AspS9I GGNCC 2 cut(s) 71, 225
AsuC2I CCSGG 1 cut(s) 420
AsuHPI GGTGA 2 cut(s) 297, 824
AvaI CYCGRG 5 cut(s) 119, 285, 344, 824, 844
AvaII GGWCC 2 cut(s) 71, 225
AxyI CCTNAGG 1 cut(s) 335
BaeI ACNNNNGTAYC 2 cut(s) 254, 287
BalI TGGCCA 1 cut(s) 663
BamHI GGATCC 1 cut(s) 289
BanI GGYRCC 1 cut(s) 485
BauI CACGAG 1 cut(s) 218
Bbv12I GWGCWC 1 cut(s) 219
BbvI GCAGC 1 cut(s) 932
BccI CCATC 2 cut(s) 517, 671
BceAI ACGGC 3 cut(s) 576, 602, 618
BciT130I CCWGG 2 cut(s) 630, 968
BciVI GTATCC 1 cut(s) 255
BclI TGATCA 1 cut(s) 454
BcnI CCSGG 1 cut(s) 420
BcoDI GTCTC 2 cut(s) 116, 809
BfaI CTAG 1 cut(s) 17
BfuAI ACCTGC 1 cut(s) 381
BfuI GTATCC 1 cut(s) 255
BisI GCNGC 2 cut(s) 652, 946
BlsI GCNGC 2 cut(s) 653, 947
Bme1390I CCNGG 3 cut(s) 420, 630, 968
Bme18I GGWCC 2 cut(s) 71, 225
BmeT110I CYCGRG 5 cut(s) 119, 285, 344, 824, 844
BmgBI CACGTC 1 cut(s) 278
BmgT120I GGNCC 2 cut(s) 71, 225
BmiI GGNNCC 2 cut(s) 291, 487
BmrFI CCNGG 3 cut(s) 420, 630, 968
BplI GAGNNNNNCTC 2 cut(s) 113, 145
BpuMI CCSGG 1 cut(s) 420
BsaAI YACGTR 1 cut(s) 934
BsaHI GRCGYC 1 cut(s) 615
BsaI GGTCTC 1 cut(s) 809
BsaJI CCNNGG 2 cut(s) 431, 669
Bsc4I CCNNNNNNNGG 3 cut(s) 253, 507, 670
Bse118I RCCGGY 1 cut(s) 488
Bse1I ACTGG 1 cut(s) 877
Bse21I CCTNAGG 1 cut(s) 335
BseBI CCWGG 2 cut(s) 630, 968
BseDI CCNNGG 2 cut(s) 431, 669
BseGI GGATG 2 cut(s) 376, 688
BseLI CCNNNNNNNGG 3 cut(s) 253, 507, 670
BseNI ACTGG 1 cut(s) 877
BseXI GCAGC 1 cut(s) 932
Bsh1236I CGCG 2 cut(s) 635, 656
BshFI GGCC 3 cut(s) 399, 663, 674
BshNI GGYRCC 1 cut(s) 485
BsiHKAI GWGCWC 1 cut(s) 219
BsiHKCI CYCGRG 5 cut(s) 119, 285, 344, 824, 844
BsiSI CCGG 5 cut(s) 400, 420, 483, 489, 501
BslFI GGGAC 1 cut(s) 102
BslI CCNNNNNNNGG 3 cut(s) 253, 507, 670
BsmAI GTCTC 2 cut(s) 116, 809
BsmFI GGGAC 1 cut(s) 102
BsnI GGCC 3 cut(s) 399, 663, 674
Bso31I GGTCTC 1 cut(s) 809
BsoBI CYCGRG 5 cut(s) 119, 285, 344, 824, 844
Bsp1286I GDGCHC 1 cut(s) 219
Bsp143I GATC 4 cut(s) 189, 289, 378, 454
Bsp19I CCATGG 1 cut(s) 431
BspACI CCGC 3 cut(s) 651, 837, 948
BspANI GGCC 3 cut(s) 399, 663, 674
BspFNI CGCG 2 cut(s) 635, 656
BspLI GGNNCC 2 cut(s) 291, 487
BspMI ACCTGC 1 cut(s) 381
BspPI GGATC 4 cut(s) 197, 284, 297, 386
BspT107I GGYRCC 1 cut(s) 485
BspTNI GGTCTC 1 cut(s) 809
BsrFI RCCGGY 1 cut(s) 488
BsrI ACTGG 1 cut(s) 877
BssAI RCCGGY 1 cut(s) 488
BssECI CCNNGG 2 cut(s) 431, 669
BssMI GATC 4 cut(s) 189, 289, 378, 454
BssNI GRCGYC 1 cut(s) 615
BssSI CACGAG 1 cut(s) 218
BssT1I CCWWGG 2 cut(s) 431, 669
Bst2BI CACGAG 1 cut(s) 218
Bst2UI CCWGG 2 cut(s) 630, 968
Bst4CI ACNGT 3 cut(s) 7, 309, 497
BstACI GRCGYC 1 cut(s) 615
BstBAI YACGTR 1 cut(s) 934
BstDEI CTNAG 2 cut(s) 229, 335
BstDSI CCRYGG 1 cut(s) 431
BstEII GGTNACC 1 cut(s) 303
BstF5I GGATG 2 cut(s) 376, 688
BstFNI CGCG 2 cut(s) 635, 656
BstHHI GCGC 3 cut(s) 635, 645, 656
BstKTI GATC 4 cut(s) 192, 292, 381, 457
BstMAI GTCTC 2 cut(s) 116, 809
BstMBI GATC 4 cut(s) 189, 289, 378, 454
BstMWI GCNNNNNNNGC 4 cut(s) 396, 651, 660, 951
BstNI CCWGG 2 cut(s) 630, 968
BstPI GGTNACC 1 cut(s) 303
BstSCI CCNGG 3 cut(s) 418, 628, 966
BstUI CGCG 2 cut(s) 635, 656
BstV1I GCAGC 1 cut(s) 932
BstX2I RGATCY 1 cut(s) 289
BstXI CCANNNNNNTGG 1 cut(s) 300
BstYI RGATCY 1 cut(s) 289
Bsu36I CCTNAGG 1 cut(s) 335
BsuI GTATCC 1 cut(s) 255
BsuRI GGCC 3 cut(s) 399, 663, 674
BtgI CCRYGG 1 cut(s) 431
BtrI CACGTC 1 cut(s) 278
BtsCI GGATG 2 cut(s) 376, 688
BtsIMutI CAGTG 2 cut(s) 502, 628
BveI ACCTGC 1 cut(s) 381
CfoI GCGC 3 cut(s) 635, 645, 656
Cfr10I RCCGGY 1 cut(s) 488
Cfr13I GGNCC 2 cut(s) 71, 225
CseI GACGC 2 cut(s) 623, 960
CviAII CATG 5 cut(s) 114, 313, 432, 646, 665
CviJI RGCY 5 cut(s) 52, 343, 399, 663, 674
CviKI_1 RGCY 5 cut(s) 52, 343, 399, 663, 674
DdeI CTNAG 2 cut(s) 229, 335
DpnI GATC 4 cut(s) 191, 291, 380, 456
DpnII GATC 4 cut(s) 189, 289, 378, 454
DraI TTTAAA 1 cut(s) 778
EaeI YGGCCR 3 cut(s) 397, 661, 672
Eco130I CCWWGG 2 cut(s) 431, 669
Eco31I GGTCTC 1 cut(s) 809
Eco47I GGWCC 2 cut(s) 71, 225
Eco81I CCTNAGG 1 cut(s) 335
Eco88I CYCGRG 5 cut(s) 119, 285, 344, 824, 844
Eco91I GGTNACC 1 cut(s) 303
EcoO109I RGGNCCY 1 cut(s) 225
EcoO65I GGTNACC 1 cut(s) 303
EcoRII CCWGG 2 cut(s) 628, 966
EcoT14I CCWWGG 2 cut(s) 431, 669
ErhI CCWWGG 2 cut(s) 431, 669
FaeI CATG 5 cut(s) 117, 316, 435, 649, 668
FalI AAGNNNNNCTT 2 cut(s) 250, 282
FaqI GGGAC 1 cut(s) 102
FatI CATG 5 cut(s) 113, 312, 431, 645, 664
FbaI TGATCA 1 cut(s) 454
Fnu4HI GCNGC 2 cut(s) 652, 946
FokI GGATG 2 cut(s) 383, 695
Fsp4HI GCNGC 2 cut(s) 652, 946
FspBI CTAG 1 cut(s) 17
FspI TGCGCA 1 cut(s) 644
GlaI GCGC 3 cut(s) 634, 644, 655
GluI GCNGC 2 cut(s) 652, 946
HaeIII GGCC 3 cut(s) 399, 663, 674
HapII CCGG 5 cut(s) 400, 420, 483, 489, 501
HgaI GACGC 2 cut(s) 623, 960
HhaI GCGC 3 cut(s) 635, 645, 656
Hin1I GRCGYC 1 cut(s) 615
Hin1II CATG 5 cut(s) 117, 316, 435, 649, 668
Hin6I GCGC 3 cut(s) 633, 643, 654
HinP1I GCGC 3 cut(s) 633, 643, 654
HincII GTYRAC 1 cut(s) 567
HindII GTYRAC 1 cut(s) 567
HinfI GANTC 3 cut(s) 124, 427, 572
HpaI GTTAAC 1 cut(s) 567
HpaII CCGG 5 cut(s) 400, 420, 483, 489, 501
HphI GGTGA 2 cut(s) 297, 824
Hpy166II GTNNAC 1 cut(s) 567
Hpy188I TCNGA 1 cut(s) 514
Hpy188III TCNNGA 8 cut(s) 119, 220, 287, 376, 382, 474, 689, 824
Hpy8I GTNNAC 1 cut(s) 567
HpyAV CCTTC 3 cut(s) 276, 355, 876
HpyCH4III ACNGT 3 cut(s) 7, 309, 497
HpyCH4IV ACGT 7 cut(s) 277, 320, 707, 786, 904, 912, 933
HpyCH4V TGCA 2 cut(s) 316, 390
HpyF10VI GCNNNNNNNGC 4 cut(s) 396, 651, 660, 951
HpyF3I CTNAG 2 cut(s) 229, 335
HpySE526I ACGT 7 cut(s) 277, 320, 707, 786, 904, 912, 933
Hsp92I GRCGYC 1 cut(s) 615
Hsp92II CATG 5 cut(s) 117, 316, 435, 649, 668
HspAI GCGC 3 cut(s) 633, 643, 654
Ksp22I TGATCA 1 cut(s) 454
KspAI GTTAAC 1 cut(s) 567
Kzo9I GATC 4 cut(s) 189, 289, 378, 454
Lsp1109I GCAGC 1 cut(s) 932
MaeI CTAG 1 cut(s) 17
MaeII ACGT 7 cut(s) 277, 320, 707, 786, 904, 912, 933
MaeIII GTNAC 4 cut(s) 183, 303, 839, 857
MalI GATC 4 cut(s) 191, 291, 380, 456
MboI GATC 4 cut(s) 189, 289, 378, 454
MflI RGATCY 1 cut(s) 289
MhlI GDGCHC 1 cut(s) 219
MlsI TGGCCA 1 cut(s) 663
MluCI AATT 4 cut(s) 324, 467, 609, 780
MluNI TGGCCA 1 cut(s) 663
MlyI GAGTC 1 cut(s) 118
MmeI TCCRAC 2 cut(s) 262, 492
MnlI CCTC 7 cut(s) 107, 187, 216, 333, 685, 820, 840
Mox20I TGGCCA 1 cut(s) 663
MscI TGGCCA 1 cut(s) 663
MseI TTAA 6 cut(s) 323, 566, 585, 608, 777, 783
MslI CAYNNNNRTG 3 cut(s) 212, 710, 810
Msp20I TGGCCA 1 cut(s) 663
MspI CCGG 5 cut(s) 400, 420, 483, 489, 501
MspR9I CCNGG 3 cut(s) 420, 630, 968
MvaI CCWGG 2 cut(s) 630, 968
MvnI CGCG 2 cut(s) 635, 656
MwoI GCNNNNNNNGC 4 cut(s) 396, 651, 660, 951
NciI CCSGG 1 cut(s) 420
NcoI CCATGG 1 cut(s) 431
NdeII GATC 4 cut(s) 189, 289, 378, 454
NlaIII CATG 5 cut(s) 117, 316, 435, 649, 668
NlaIV GGNNCC 2 cut(s) 291, 487
NmuCI GTSAC 3 cut(s) 183, 303, 839
NsbI TGCGCA 1 cut(s) 644
OliI CACNNNNGTG 1 cut(s) 710
PaeR7I CTCGAG 2 cut(s) 824, 844
PfeI GAWTC 2 cut(s) 427, 572
PflFI GACNNNGTC 1 cut(s) 617
PflMI CCANNNNNTGG 1 cut(s) 670
PkrI GCNGC 2 cut(s) 653, 947
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
Ppu21I YACGTR 1 cut(s) 934
PpuMI RGGWCCY 1 cut(s) 225
Psp1406I AACGTT 1 cut(s) 904
Psp5II RGGWCCY 1 cut(s) 225
Psp6I CCWGG 2 cut(s) 628, 966
PspEI GGTNACC 1 cut(s) 303
PspGI CCWGG 2 cut(s) 628, 966
PspN4I GGNNCC 2 cut(s) 291, 487
PspPI GGNCC 2 cut(s) 71, 225
PspPPI RGGWCCY 1 cut(s) 225
PspXI VCTCGAGB 1 cut(s) 844
PsuI RGATCY 1 cut(s) 289
PsyI GACNNNGTC 1 cut(s) 617
RseI CAYNNNNRTG 3 cut(s) 212, 710, 810
SaqAI TTAA 6 cut(s) 323, 566, 585, 608, 777, 783
SatI GCNGC 2 cut(s) 652, 946
Sau3AI GATC 4 cut(s) 189, 289, 378, 454
Sau96I GGNCC 2 cut(s) 71, 225
SchI GAGTC 1 cut(s) 118
ScrFI CCNGG 3 cut(s) 420, 630, 968
SduI GDGCHC 1 cut(s) 219
Sfr274I CTCGAG 2 cut(s) 824, 844
SgrAI CRCCGGYG 1 cut(s) 488
SinI GGWCC 2 cut(s) 71, 225
SlaI CTCGAG 2 cut(s) 824, 844
SmiMI CAYNNNNRTG 3 cut(s) 212, 710, 810
SmlI CTYRAG 2 cut(s) 824, 844
SmoI CTYRAG 2 cut(s) 824, 844
Sse9I AATT 4 cut(s) 324, 467, 609, 780
SsiI CCGC 3 cut(s) 651, 837, 948
SspI AATATT 3 cut(s) 530, 552, 594
SspMI CTAG 1 cut(s) 17
StyD4I CCNGG 3 cut(s) 418, 628, 966
StyI CCWWGG 2 cut(s) 431, 669
TaaI ACNGT 3 cut(s) 7, 309, 497
TaiI ACGT 7 cut(s) 280, 323, 710, 789, 907, 915, 936
TaqI TCGA 3 cut(s) 192, 825, 845
TasI AATT 4 cut(s) 324, 467, 609, 780
TauI GCSGC 1 cut(s) 654
TfiI GAWTC 2 cut(s) 427, 572
Tru1I TTAA 6 cut(s) 323, 566, 585, 608, 777, 783
Tru9I TTAA 6 cut(s) 323, 566, 585, 608, 777, 783
TscAI CASTG 2 cut(s) 502, 628
TseFI GTSAC 3 cut(s) 183, 303, 839
TseI GCWGC 1 cut(s) 945
Tsp45I GTSAC 3 cut(s) 183, 303, 839
TspDTI ATGAA 4 cut(s) 141, 301, 708, 914
TspGWI ACGGA 6 cut(s) 171, 202, 523, 561, 584, 603
TspRI CASTG 2 cut(s) 502, 628
Tth111I GACNNNGTC 1 cut(s) 617
Van91I CCANNNNNTGG 1 cut(s) 670
VpaK11BI GGWCC 2 cut(s) 71, 225
XapI RAATTY 1 cut(s) 467
XcmI CCANNNNNNNNNTGG 1 cut(s) 974
XhoI CTCGAG 2 cut(s) 824, 844
XspI CTAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.