RchiOBHm_Chr1g0372911

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000399
Physical Location & Seq
Reverse (-)
61434577 .. 61435773
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1197 bp
ATGGCTGTCGACTGGTCTACGGATATTCCTCGAGAGCTTGTTCTCTGTTTCGCCAATCGGTTGATGGTTTCGTTGGAGGATTTTATTGCTTTTGGTGCAGTTTGCAAATCATGGAGTTCAGCGGCGATGGAGGCAAAGGAAAACTACCTTGCTAGTATTAGTACTAGTACTAGTACTGGTACTATTACTAGCACTGGATTGAGATTATTAGCATATCAAGTTCCTCTCCTAATGCTACCAGTAGTACTTACCCTTCCACGGGGTGTTGCAGGCGGCGACGTGACGATTGGACTTTACAGTCTGACTGCAAAAGGTGATAAGGTTTACAGACGTAAATTACAAGATGCTAAAGGTAAAAAGTGCTATTCTTCTTTAGGATGGCTGGTCACTGTAGTCACTGTATCTAAAGAGTTGGAATTTAATCTGTTACATCCCTTCAAACATGCCATAAACATTCCACTCCCAAATAGTTTGATAAAATATCATGACGGCATATGCAAGTTTGTCATATCGTCGAGTCCTTCTTGGACATCGGATTACGTAGTCATGTTTCATGCGTATAATACTTTGGAATATTGCAGACCAGGACTACGTGAAAATTATTGGACGAAGCTATCATTCCCAGAGTACAATTATATCAGGGATCTGACTTACTATCGGGGACAATTTTATGTGGTGAACTCTTTTGGCTGTGTTTCAGTCGTTTGTGTTTGTGATATCGACGACCCTAAAACACTGAAGGCTGTTGCTCCAAAGATAAATCAAAAGGAACTACTTGGTACTAGGAGGCCCCGCATTAAACAACAATACTTGGTGGAATGCGCCGGAGCTCTATTGCTTGTTTTGTGTCTCTACTCCGGTAAAAAGTATGAATCCACTACCGCCTGTAGGGTTTTCGAGGTCCCGTTTGATAACGGCAAATCATGGAAAGACTCTGAGGTCAAGAATTTGGGGAATAGAGCAATCTTCTTGAGTCAAAGTAGTTCTTCCTTCTGTATTGAGGTCACTGATTATTCTGGATGTAAAGCCAATTGCATATACTTCATGAACAATAAGGTAGTCTCTTCAGTAGTAAACATTGATTTGGGTATTTATAATATGGGCAACGCGTCAATCGACCGAGAATTTGGCAAATCCTTCAATCATGGTTTTAAAGGTTGGAGGGGATATCATTTATGGATTCAACCAAGTTTTTAA

Protein Analysis

398

Amino Acids

44.73

Weight (kDa)

8.91

Isoelectric Point (pI)

29.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 98 - 366 2.3e-46 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1095
AasI GACNNNNNNGTC 2 cut(s) 297, 938
AccI GTMKAC 2 cut(s) 9, 17
AccII CGCG 1 cut(s) 1109
AciI CCGC 4 cut(s) 122, 273, 793, 882
AclWI GGATC 1 cut(s) 651
AcsI RAATTY 3 cut(s) 416, 946, 1124
AcuI CTGAAG 2 cut(s) 758, 1050
AdeI CACNNNGTG 1 cut(s) 263
AfaI GTAC 7 cut(s) 163, 169, 175, 181, 246, 629, 781
AfiI CCNNNNNNNGG 3 cut(s) 258, 259, 888
AflIII ACRYGT 1 cut(s) 1107
AgsI TTSAA 3 cut(s) 439, 1141, 1184
AhlI ACTAGT 2 cut(s) 164, 170
AjiI CACGTC 1 cut(s) 280
AjnI CCWGG 1 cut(s) 583
AluBI AGCT 3 cut(s) 37, 613, 830
AluI AGCT 3 cut(s) 37, 613, 830
Alw21I GWGCWC 1 cut(s) 832
Alw26I GTCTC 2 cut(s) 854, 1066
AlwI GGATC 1 cut(s) 651
Ama87I CYCGRG 1 cut(s) 30
AoxI GGCC 1 cut(s) 788
ApoI RAATTY 3 cut(s) 416, 946, 1124
ArsI GACNNNNNNTTYG 2 cut(s) 1109, 1141
AspLEI GCGC 1 cut(s) 824
AspS9I GGNCC 2 cut(s) 789, 901
AsuHPI GGTGA 2 cut(s) 326, 688
AvaI CYCGRG 1 cut(s) 30
AvaII GGWCC 1 cut(s) 901
BanII GRGCYC 1 cut(s) 832
BarI GAAGNNNNNNTAC 2 cut(s) 237, 269
Bbv12I GWGCWC 1 cut(s) 832
BccI CCATC 3 cut(s) 58, 121, 372
BceAI ACGGC 2 cut(s) 505, 931
BciT130I CCWGG 1 cut(s) 585
BcoDI GTCTC 2 cut(s) 854, 1066
BcuI ACTAGT 2 cut(s) 164, 170
BfaI CTAG 5 cut(s) 153, 165, 171, 189, 783
BfmI CTRYAG 2 cut(s) 390, 886
BisI GCNGC 2 cut(s) 123, 274
BlsI GCNGC 2 cut(s) 124, 275
BmcAI AGTACT 4 cut(s) 163, 169, 175, 246
Bme1390I CCNGG 1 cut(s) 585
Bme18I GGWCC 1 cut(s) 901
BmeT110I CYCGRG 1 cut(s) 30
BmgBI CACGTC 1 cut(s) 280
BmgT120I GGNCC 2 cut(s) 789, 901
BmiI GGNNCC 2 cut(s) 791, 903
BmrFI CCNGG 1 cut(s) 585
BmsI GCATC 1 cut(s) 334
BpuEI CTTGAG 1 cut(s) 991
BsaAI YACGTR 2 cut(s) 541, 593
BsaJI CCNNGG 1 cut(s) 257
BsaWI WCCGGW 1 cut(s) 857
Bsc4I CCNNNNNNNGG 3 cut(s) 258, 259, 888
Bse1I ACTGG 4 cut(s) 17, 181, 199, 239
BseBI CCWGG 1 cut(s) 585
BseDI CCNNGG 1 cut(s) 257
BseGI GGATG 3 cut(s) 383, 430, 1025
BseLI CCNNNNNNNGG 3 cut(s) 258, 259, 888
BseMII CTCAG 1 cut(s) 927
BseNI ACTGG 4 cut(s) 17, 181, 199, 239
BsgI GTGCAG 1 cut(s) 117
Bsh1236I CGCG 1 cut(s) 1109
Bsh1285I CGRYCG 1 cut(s) 1120
BshFI GGCC 1 cut(s) 790
BsiEI CGRYCG 1 cut(s) 1120
BsiHKAI GWGCWC 1 cut(s) 832
BsiHKCI CYCGRG 1 cut(s) 30
BsiSI CCGG 2 cut(s) 825, 858
BslFI GGGAC 2 cut(s) 675, 887
BslI CCNNNNNNNGG 3 cut(s) 258, 259, 888
BsmAI GTCTC 2 cut(s) 854, 1066
BsmFI GGGAC 2 cut(s) 675, 887
BsmI GAATGC 1 cut(s) 824
BsnI GGCC 1 cut(s) 790
BsoBI CYCGRG 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 832
Bsp143I GATC 1 cut(s) 643
BspACI CCGC 4 cut(s) 122, 273, 793, 882
BspANI GGCC 1 cut(s) 790
BspCNI CTCAG 1 cut(s) 928
BspFNI CGCG 1 cut(s) 1109
BspHI TCATGA 2 cut(s) 484, 1044
BspLI GGNNCC 2 cut(s) 791, 903
BspPI GGATC 1 cut(s) 651
BsrI ACTGG 4 cut(s) 17, 181, 199, 239
BssECI CCNNGG 1 cut(s) 257
BssMI GATC 1 cut(s) 643
Bst2UI CCWGG 1 cut(s) 585
Bst4CI ACNGT 3 cut(s) 299, 391, 400
Bst6I CTCTTC 1 cut(s) 1069
BstBAI YACGTR 2 cut(s) 541, 593
BstC8I GCNNGC 1 cut(s) 271
BstDEI CTNAG 1 cut(s) 936
BstDSI CCRYGG 1 cut(s) 257
BstF5I GGATG 3 cut(s) 383, 430, 1025
BstFNI CGCG 1 cut(s) 1109
BstHHI GCGC 1 cut(s) 824
BstKTI GATC 1 cut(s) 646
BstMAI GTCTC 2 cut(s) 854, 1066
BstMBI GATC 1 cut(s) 643
BstMCI CGRYCG 1 cut(s) 1120
BstMWI GCNNNNNNNGC 2 cut(s) 95, 131
BstNI CCWGG 1 cut(s) 585
BstNSI RCATGY 1 cut(s) 446
BstSCI CCNGG 1 cut(s) 583
BstSFI CTRYAG 2 cut(s) 390, 886
BstSNI TACGTA 1 cut(s) 541
BstUI CGCG 1 cut(s) 1109
BstX2I RGATCY 1 cut(s) 643
BstYI RGATCY 1 cut(s) 643
BsuRI GGCC 1 cut(s) 790
BtgI CCRYGG 1 cut(s) 257
BtgZI GCGATG 1 cut(s) 140
BtrI CACGTC 1 cut(s) 280
BtsCI GGATG 3 cut(s) 383, 430, 1025
BtsIMutI CAGTG 5 cut(s) 192, 387, 396, 734, 1005
Cac8I GCNNGC 1 cut(s) 271
CciI TCATGA 2 cut(s) 484, 1044
CfoI GCGC 1 cut(s) 824
Cfr13I GGNCC 2 cut(s) 789, 901
CseI GACGC 1 cut(s) 1098
Csp6I GTAC 7 cut(s) 162, 168, 174, 180, 245, 628, 780
CviAII CATG 8 cut(s) 111, 443, 485, 547, 554, 924, 1045, 1145
CviJI RGCY 9 cut(s) 5, 37, 382, 613, 690, 743, 790, 830, 1028
CviKI_1 RGCY 9 cut(s) 5, 37, 382, 613, 690, 743, 790, 830, 1028
CviQI GTAC 7 cut(s) 162, 168, 174, 180, 245, 628, 780
DdeI CTNAG 1 cut(s) 936
DpnI GATC 1 cut(s) 645
DpnII GATC 1 cut(s) 643
DraI TTTAAA 1 cut(s) 1153
DraIII CACNNNGTG 1 cut(s) 263
DrdI GACNNNNNNGTC 2 cut(s) 297, 938
DseDI GACNNNNNNGTC 2 cut(s) 297, 938
Eam1104I CTCTTC 1 cut(s) 1069
EarI CTCTTC 1 cut(s) 1069
Ecl136II GAGCTC 1 cut(s) 830
Eco105I TACGTA 1 cut(s) 541
Eco24I GRGCYC 1 cut(s) 832
Eco32I GATATC 2 cut(s) 718, 1169
Eco47I GGWCC 1 cut(s) 901
Eco53kI GAGCTC 1 cut(s) 830
Eco57I CTGAAG 2 cut(s) 758, 1050
Eco88I CYCGRG 1 cut(s) 30
EcoICRI GAGCTC 1 cut(s) 830
EcoO109I RGGNCCY 2 cut(s) 789, 901
EcoRII CCWGG 1 cut(s) 583
EcoRV GATATC 2 cut(s) 718, 1169
EcoT38I GRGCYC 1 cut(s) 832
FaeI CATG 8 cut(s) 114, 446, 488, 550, 557, 927, 1048, 1148
FalI AAGNNNNNCTT 2 cut(s) 970, 1002
FaqI GGGAC 2 cut(s) 675, 887
FatI CATG 8 cut(s) 110, 442, 484, 546, 553, 923, 1044, 1144
FauI CCCGC 1 cut(s) 800
FauNDI CATATG 1 cut(s) 494
FblI GTMKAC 2 cut(s) 9, 17
Fnu4HI GCNGC 2 cut(s) 123, 274
FokI GGATG 3 cut(s) 390, 417, 1032
FriOI GRGCYC 1 cut(s) 832
Fsp4HI GCNGC 2 cut(s) 123, 274
FspBI CTAG 5 cut(s) 153, 165, 171, 189, 783
GlaI GCGC 1 cut(s) 823
GluI GCNGC 2 cut(s) 123, 274
HaeIII GGCC 1 cut(s) 790
HapII CCGG 2 cut(s) 825, 858
HgaI GACGC 1 cut(s) 1098
HhaI GCGC 1 cut(s) 824
Hin1II CATG 8 cut(s) 114, 446, 488, 550, 557, 927, 1048, 1148
Hin6I GCGC 1 cut(s) 822
HinP1I GCGC 1 cut(s) 822
HincII GTYRAC 1 cut(s) 10
HindII GTYRAC 1 cut(s) 10
HinfI GANTC 5 cut(s) 517, 872, 932, 973, 1180
HpaII CCGG 2 cut(s) 825, 858
HphI GGTGA 2 cut(s) 326, 688
Hpy166II GTNNAC 5 cut(s) 10, 18, 325, 679, 1075
Hpy188I TCNGA 4 cut(s) 303, 535, 648, 937
Hpy188III TCNNGA 6 cut(s) 32, 485, 943, 970, 1017, 1045
Hpy8I GTNNAC 5 cut(s) 10, 18, 325, 679, 1075
Hpy99I CGWCG 3 cut(s) 281, 517, 725
HpyAV CCTTC 6 cut(s) 263, 445, 531, 733, 1000, 1147
HpyCH4III ACNGT 3 cut(s) 299, 391, 400
HpyCH4IV ACGT 4 cut(s) 279, 331, 540, 592
HpyCH4V TGCA 7 cut(s) 98, 105, 269, 308, 498, 579, 1035
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 131
HpyF3I CTNAG 1 cut(s) 936
HpySE526I ACGT 4 cut(s) 279, 331, 540, 592
Hsp92II CATG 8 cut(s) 114, 446, 488, 550, 557, 927, 1048, 1148
HspAI GCGC 1 cut(s) 822
Kzo9I GATC 1 cut(s) 643
LmnI GCTCC 2 cut(s) 754, 827
LweI GCATC 1 cut(s) 334
MaeI CTAG 5 cut(s) 153, 165, 171, 189, 783
MaeII ACGT 4 cut(s) 279, 331, 540, 592
MaeIII GTNAC 5 cut(s) 280, 385, 394, 426, 1003
MalI GATC 1 cut(s) 645
MboI GATC 1 cut(s) 643
MboII GAAGA 4 cut(s) 360, 958, 978, 1056
MfeI CAATTG 1 cut(s) 1030
MflI RGATCY 1 cut(s) 643
MhlI GDGCHC 1 cut(s) 832
MluCI AATT 8 cut(s) 335, 416, 598, 631, 665, 946, 1030, 1124
MluI ACGCGT 1 cut(s) 1107
MlyI GAGTC 3 cut(s) 526, 926, 982
MmeI TCCRAC 3 cut(s) 54, 393, 1139
MnlI CCTC 9 cut(s) 39, 70, 124, 234, 780, 892, 931, 994, 1155
MseI TTAA 4 cut(s) 420, 798, 1152, 1195
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 2 cut(s) 825, 858
MspR9I CCNGG 1 cut(s) 585
MunI CAATTG 1 cut(s) 1030
Mva1269I GAATGC 1 cut(s) 824
MvaI CCWGG 1 cut(s) 585
MvnI CGCG 1 cut(s) 1109
MwoI GCNNNNNNNGC 2 cut(s) 95, 131
NdeI CATATG 1 cut(s) 494
NdeII GATC 1 cut(s) 643
NlaIII CATG 8 cut(s) 114, 446, 488, 550, 557, 927, 1048, 1148
NlaIV GGNNCC 2 cut(s) 791, 903
NmuCI GTSAC 4 cut(s) 280, 385, 394, 1003
NspI RCATGY 1 cut(s) 446
PaeR7I CTCGAG 1 cut(s) 30
PagI TCATGA 2 cut(s) 484, 1044
PcsI WCGNNNNNNNCGW 1 cut(s) 1113
PctI GAATGC 1 cut(s) 824
PfeI GAWTC 2 cut(s) 872, 1180
PkrI GCNGC 2 cut(s) 124, 275
PleI GAGTC 3 cut(s) 525, 926, 981
PpsI GAGTC 3 cut(s) 525, 926, 981
Ppu21I YACGTR 2 cut(s) 541, 593
PpuMI RGGWCCY 1 cut(s) 901
PsiI TTATAA 1 cut(s) 1095
Psp124BI GAGCTC 1 cut(s) 832
Psp5II RGGWCCY 1 cut(s) 901
Psp6I CCWGG 1 cut(s) 583
PspGI CCWGG 1 cut(s) 583
PspN4I GGNNCC 2 cut(s) 791, 903
PspPI GGNCC 2 cut(s) 789, 901
PspPPI RGGWCCY 1 cut(s) 901
PsuI RGATCY 1 cut(s) 643
RsaI GTAC 7 cut(s) 163, 169, 175, 181, 246, 629, 781
RsaNI GTAC 7 cut(s) 162, 168, 174, 180, 245, 628, 780
SacI GAGCTC 1 cut(s) 832
SalI GTCGAC 1 cut(s) 8
SaqAI TTAA 4 cut(s) 420, 798, 1152, 1195
SatI GCNGC 2 cut(s) 123, 274
Sau3AI GATC 1 cut(s) 643
Sau96I GGNCC 2 cut(s) 789, 901
ScaI AGTACT 4 cut(s) 163, 169, 175, 246
SchI GAGTC 3 cut(s) 526, 926, 982
ScrFI CCNGG 1 cut(s) 585
SduI GDGCHC 1 cut(s) 832
SfaNI GCATC 1 cut(s) 334
SfcI CTRYAG 2 cut(s) 390, 886
Sfr274I CTCGAG 1 cut(s) 30
SinI GGWCC 1 cut(s) 901
SlaI CTCGAG 1 cut(s) 30
SmlI CTYRAG 2 cut(s) 30, 970
SmoI CTYRAG 2 cut(s) 30, 970
SnaBI TACGTA 1 cut(s) 541
SpeI ACTAGT 2 cut(s) 164, 170
Sse9I AATT 8 cut(s) 335, 416, 598, 631, 665, 946, 1030, 1124
SsiI CCGC 4 cut(s) 122, 273, 793, 882
SspI AATATT 1 cut(s) 575
SspMI CTAG 5 cut(s) 153, 165, 171, 189, 783
SstI GAGCTC 1 cut(s) 832
StyD4I CCNGG 1 cut(s) 583
TaaI ACNGT 3 cut(s) 299, 391, 400
TaiI ACGT 4 cut(s) 282, 334, 543, 595
TaqI TCGA 6 cut(s) 9, 31, 515, 720, 897, 1116
TaqII GACCGA 1 cut(s) 1134
TasI AATT 8 cut(s) 335, 416, 598, 631, 665, 946, 1030, 1124
TatI WGTACW 5 cut(s) 161, 167, 173, 244, 627
TauI GCSGC 2 cut(s) 125, 276
TfiI GAWTC 2 cut(s) 872, 1180
Tru1I TTAA 4 cut(s) 420, 798, 1152, 1195
Tru9I TTAA 4 cut(s) 420, 798, 1152, 1195
TscAI CASTG 5 cut(s) 199, 394, 403, 741, 1012
TseFI GTSAC 4 cut(s) 280, 385, 394, 1003
Tsp45I GTSAC 4 cut(s) 280, 385, 394, 1003
TspDTI ATGAA 4 cut(s) 542, 885, 1033, 1061
TspGWI ACGGA 1 cut(s) 35
TspRI CASTG 5 cut(s) 199, 394, 403, 741, 1012
VpaK11BI GGWCC 1 cut(s) 901
XapI RAATTY 3 cut(s) 416, 946, 1124
XceI RCATGY 1 cut(s) 446
XcmI CCANNNNNNNNNTGG 1 cut(s) 61
XhoI CTCGAG 1 cut(s) 30
XmiI GTMKAC 2 cut(s) 9, 17
XspI CTAG 5 cut(s) 153, 165, 171, 189, 783
ZrmI AGTACT 4 cut(s) 163, 169, 175, 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.