FvH4_1g17351

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000278
Physical Location & Seq
Forward (+)
10034181 .. 10037417
3237 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g17351.t1

Sequence Viewer

Length: 429 bp
ATGACTGGATTCCGGCAACCTTTGACAGGGCACCGGGGACCGTTGACCAGACTCCGGGGGCCGATGACGGGACTCCGGAGACCGTTGACCGGGCTCTTGGGGCCGGAGGTTGACGCCAACGGCAACAATGAGGCCAGAGGCTTTTGTGGCCCAGATCCAAGAGAGAAAGGTCGTCATCCTCCTCAACGCCTTTTGATGCGGTCCTTAGCACGATCTAAGTCACCCAAATTTGTAATCGGCCAAGTTATGAACTTTGAAGAGTACGCCATAATATTTGAAGGAGAATCTATTGATGTAGTTTCGGGCCATGGTGTTAGTGAGCAGGTGGAGCTTGTTCAAGTTTTAAGGAAAGTGACAGTCTATGATTTCATTCAGCCTAGTCAGGAGGTGCTTATTTGTGTTGGTGATATTAAAGAGAAGCAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.79

Weight (kDa)

9.1

Isoelectric Point (pI)

35.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 313
Acc36I ACCTGC 1 cut(s) 313
AccB1I GGYRCC 1 cut(s) 30
AccIII TCCGGA 1 cut(s) 75
AciI CCGC 1 cut(s) 199
AclWI GGATC 1 cut(s) 149
AcoI YGGCCR 1 cut(s) 238
AcsI RAATTY 1 cut(s) 227
AcyI GRCGYC 1 cut(s) 114
AfaI GTAC 1 cut(s) 263
AfiI CCNNNNNNNGG 4 cut(s) 26, 54, 68, 89
AgsI TTSAA 3 cut(s) 257, 278, 338
AluBI AGCT 1 cut(s) 331
AluI AGCT 1 cut(s) 331
Alw26I GTCTC 1 cut(s) 73
AlwI GGATC 1 cut(s) 149
Aor13HI TCCGGA 1 cut(s) 75
AoxI GGCC 6 cut(s) 59, 101, 132, 148, 238, 304
ApoI RAATTY 1 cut(s) 227
AspS9I GGNCC 6 cut(s) 38, 59, 101, 149, 201, 304
AsuC2I CCSGG 3 cut(s) 35, 56, 91
AsuHPI GGTGA 2 cut(s) 213, 416
AvaII GGWCC 2 cut(s) 38, 201
BaeGI GKGCMC 1 cut(s) 33
BanI GGYRCC 1 cut(s) 30
BanII GRGCYC 1 cut(s) 96
BceAI ACGGC 1 cut(s) 136
BcnI CCSGG 3 cut(s) 35, 56, 91
BcoDI GTCTC 1 cut(s) 73
BfaI CTAG 1 cut(s) 378
BfuAI ACCTGC 1 cut(s) 313
Bme1390I CCNGG 3 cut(s) 35, 56, 91
Bme18I GGWCC 2 cut(s) 38, 201
BmgT120I GGNCC 6 cut(s) 38, 59, 101, 149, 201, 304
BmiI GGNNCC 4 cut(s) 32, 39, 60, 102
BmrFI CCNGG 3 cut(s) 35, 56, 91
BmsI GCATC 1 cut(s) 186
Bpu10I CCTNAGC 1 cut(s) 205
BpuMI CCSGG 3 cut(s) 35, 56, 91
BsaHI GRCGYC 1 cut(s) 114
BsaI GGTCTC 1 cut(s) 73
BsaJI CCNNGG 3 cut(s) 34, 55, 307
BsaWI WCCGGW 1 cut(s) 75
Bsc4I CCNNNNNNNGG 4 cut(s) 26, 54, 68, 89
Bse1I ACTGG 1 cut(s) 10
BseAI TCCGGA 1 cut(s) 75
BseDI CCNNGG 3 cut(s) 34, 55, 307
BseGI GGATG 1 cut(s) 175
BseLI CCNNNNNNNGG 4 cut(s) 26, 54, 68, 89
BseNI ACTGG 1 cut(s) 10
BseRI GAGGAG 1 cut(s) 171
BseSI GKGCMC 1 cut(s) 33
BshFI GGCC 6 cut(s) 61, 103, 134, 150, 240, 306
BshNI GGYRCC 1 cut(s) 30
BsiSI CCGG 6 cut(s) 13, 34, 55, 76, 90, 104
BslFI GGGAC 2 cut(s) 51, 84
BslI CCNNNNNNNGG 4 cut(s) 26, 54, 68, 89
BsmAI GTCTC 1 cut(s) 73
BsmFI GGGAC 2 cut(s) 51, 84
BsnI GGCC 6 cut(s) 61, 103, 134, 150, 240, 306
Bso31I GGTCTC 1 cut(s) 73
Bsp1286I GDGCHC 2 cut(s) 33, 96
Bsp13I TCCGGA 1 cut(s) 75
Bsp143I GATC 2 cut(s) 154, 212
Bsp19I CCATGG 1 cut(s) 307
BspACI CCGC 1 cut(s) 199
BspANI GGCC 6 cut(s) 61, 103, 134, 150, 240, 306
BspEI TCCGGA 1 cut(s) 75
BspLI GGNNCC 4 cut(s) 32, 39, 60, 102
BspMI ACCTGC 1 cut(s) 313
BspPI GGATC 1 cut(s) 149
BspT107I GGYRCC 1 cut(s) 30
BspTNI GGTCTC 1 cut(s) 73
BsrI ACTGG 1 cut(s) 10
BssECI CCNNGG 3 cut(s) 34, 55, 307
BssMI GATC 2 cut(s) 154, 212
BssNI GRCGYC 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 307
Bst4CI ACNGT 3 cut(s) 42, 84, 358
Bst6I CTCTTC 1 cut(s) 252
BstACI GRCGYC 1 cut(s) 114
BstDEI CTNAG 2 cut(s) 205, 216
BstDSI CCRYGG 1 cut(s) 307
BstENI CCTNNNNNAGG 1 cut(s) 24
BstF5I GGATG 1 cut(s) 175
BstKTI GATC 2 cut(s) 157, 215
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 2 cut(s) 154, 212
BstMWI GCNNNNNNNGC 3 cut(s) 100, 147, 328
BstSCI CCNGG 3 cut(s) 33, 54, 89
BstSLI GKGCMC 1 cut(s) 33
BstX2I RGATCY 1 cut(s) 154
BstYI RGATCY 1 cut(s) 154
BsuRI GGCC 6 cut(s) 61, 103, 134, 150, 240, 306
BtgI CCRYGG 1 cut(s) 307
BtsCI GGATG 1 cut(s) 175
BveI ACCTGC 1 cut(s) 313
Cfr13I GGNCC 6 cut(s) 38, 59, 101, 149, 201, 304
CseI GACGC 1 cut(s) 122
Csp6I GTAC 1 cut(s) 262
CviAII CATG 1 cut(s) 308
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 2 cut(s) 205, 216
DpnI GATC 2 cut(s) 156, 214
DpnII GATC 2 cut(s) 154, 212
EaeI YGGCCR 1 cut(s) 238
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
Eco130I CCWWGG 1 cut(s) 307
Eco24I GRGCYC 1 cut(s) 96
Eco31I GGTCTC 1 cut(s) 73
Eco47I GGWCC 2 cut(s) 38, 201
EcoNI CCTNNNNNAGG 1 cut(s) 24
EcoT14I CCWWGG 1 cut(s) 307
EcoT38I GRGCYC 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 307
FaeI CATG 1 cut(s) 311
FaiI YATR 4 cut(s) 248, 269, 309, 363
FaqI GGGAC 2 cut(s) 51, 84
FatI CATG 1 cut(s) 307
FokI GGATG 1 cut(s) 162
FriOI GRGCYC 1 cut(s) 96
FspBI CTAG 1 cut(s) 378
HaeIII GGCC 6 cut(s) 61, 103, 134, 150, 240, 306
HapII CCGG 6 cut(s) 13, 34, 55, 76, 90, 104
HgaI GACGC 1 cut(s) 122
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 1 cut(s) 311
HincII GTYRAC 3 cut(s) 45, 87, 112
HindII GTYRAC 3 cut(s) 45, 87, 112
HinfI GANTC 4 cut(s) 9, 51, 72, 284
HpaII CCGG 6 cut(s) 13, 34, 55, 76, 90, 104
HphI GGTGA 2 cut(s) 213, 416
Hpy166II GTNNAC 3 cut(s) 45, 87, 112
Hpy188III TCNNGA 2 cut(s) 76, 383
Hpy8I GTNNAC 3 cut(s) 45, 87, 112
HpyAV CCTTC 1 cut(s) 272
HpyCH4III ACNGT 3 cut(s) 42, 84, 358
HpyF10VI GCNNNNNNNGC 3 cut(s) 100, 147, 328
HpyF3I CTNAG 2 cut(s) 205, 216
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 1 cut(s) 311
Kpn2I TCCGGA 1 cut(s) 75
Kzo9I GATC 2 cut(s) 154, 212
LmnI GCTCC 1 cut(s) 328
LweI GCATC 1 cut(s) 186
MaeI CTAG 1 cut(s) 378
MaeIII GTNAC 2 cut(s) 219, 352
MalI GATC 2 cut(s) 156, 214
MboI GATC 2 cut(s) 154, 212
MboII GAAGA 1 cut(s) 269
MflI RGATCY 1 cut(s) 154
MhlI GDGCHC 2 cut(s) 33, 96
MluCI AATT 1 cut(s) 227
MlyI GAGTC 2 cut(s) 45, 66
MnlI CCTC 6 cut(s) 100, 124, 131, 189, 192, 379
MroI TCCGGA 1 cut(s) 75
MseI TTAA 2 cut(s) 344, 411
MspI CCGG 6 cut(s) 13, 34, 55, 76, 90, 104
MspR9I CCNGG 3 cut(s) 35, 56, 91
MwoI GCNNNNNNNGC 3 cut(s) 100, 147, 328
NciI CCSGG 3 cut(s) 35, 56, 91
NcoI CCATGG 1 cut(s) 307
NdeII GATC 2 cut(s) 154, 212
NlaIII CATG 1 cut(s) 311
NlaIV GGNNCC 4 cut(s) 32, 39, 60, 102
NmuCI GTSAC 2 cut(s) 219, 352
PaqCI CACCTGC 1 cut(s) 313
PfeI GAWTC 2 cut(s) 9, 284
PleI GAGTC 2 cut(s) 45, 66
PpsI GAGTC 2 cut(s) 45, 66
PspN4I GGNNCC 4 cut(s) 32, 39, 60, 102
PspPI GGNCC 6 cut(s) 38, 59, 101, 149, 201, 304
PsuI RGATCY 1 cut(s) 154
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SaqAI TTAA 2 cut(s) 344, 411
Sau3AI GATC 2 cut(s) 154, 212
Sau96I GGNCC 6 cut(s) 38, 59, 101, 149, 201, 304
SchI GAGTC 2 cut(s) 45, 66
ScrFI CCNGG 3 cut(s) 35, 56, 91
SduI GDGCHC 2 cut(s) 33, 96
SetI ASST 6 cut(s) 22, 111, 172, 327, 333, 390
SfaNI GCATC 1 cut(s) 186
SinI GGWCC 2 cut(s) 38, 201
Sse9I AATT 1 cut(s) 227
SsiI CCGC 1 cut(s) 199
SspI AATATT 1 cut(s) 273
SspMI CTAG 1 cut(s) 378
StyD4I CCNGG 3 cut(s) 33, 54, 89
StyI CCWWGG 1 cut(s) 307
TaaI ACNGT 3 cut(s) 42, 84, 358
TasI AATT 1 cut(s) 227
TfiI GAWTC 2 cut(s) 9, 284
Tru1I TTAA 2 cut(s) 344, 411
Tru9I TTAA 2 cut(s) 344, 411
TseFI GTSAC 2 cut(s) 219, 352
Tsp45I GTSAC 2 cut(s) 219, 352
TspDTI ATGAA 2 cut(s) 263, 358
VpaK11BI GGWCC 2 cut(s) 38, 201
XagI CCTNNNNNAGG 1 cut(s) 24
XapI RAATTY 1 cut(s) 227
XspI CTAG 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.