Mitochondrial protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 1113, 1246 |
| AciI | CCGC | 4 cut(s) | 153, 268, 364, 1151 |
| AclWI | GGATC | 4 cut(s) | 1065, 1078, 1319, 1332 |
| AcsI | RAATTY | 7 cut(s) | 77, 205, 439, 487, 551, 1181, 1195 |
| AcuI | CTGAAG | 4 cut(s) | 82, 645, 812, 837 |
| AcyI | GRCGYC | 1 cut(s) | 1247 |
| AfaI | GTAC | 1 cut(s) | 619 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 30, 1296 |
| AgsI | TTSAA | 7 cut(s) | 225, 349, 487, 557, 841, 1170, 1295 |
| AluBI | AGCT | 7 cut(s) | 176, 187, 358, 629, 845, 875, 1016 |
| AluI | AGCT | 7 cut(s) | 176, 187, 358, 629, 845, 875, 1016 |
| Alw21I | GWGCWC | 1 cut(s) | 859 |
| Alw26I | GTCTC | 4 cut(s) | 266, 827, 943, 1342 |
| Alw44I | GTGCAC | 1 cut(s) | 855 |
| AlwI | GGATC | 4 cut(s) | 1065, 1078, 1319, 1332 |
| AoxI | GGCC | 1 cut(s) | 21 |
| ApaLI | GTGCAC | 1 cut(s) | 855 |
| ApeKI | GCWGC | 2 cut(s) | 1104, 1159 |
| ApoI | RAATTY | 7 cut(s) | 77, 205, 439, 487, 551, 1181, 1195 |
| AseI | ATTAAT | 1 cut(s) | 456 |
| AspLEI | GCGC | 1 cut(s) | 1249 |
| AsuHPI | GGTGA | 3 cut(s) | 589, 935, 1019 |
| AsuII | TTCGAA | 2 cut(s) | 66, 1185 |
| BaeGI | GKGCMC | 2 cut(s) | 859, 956 |
| BamHI | GGATCC | 2 cut(s) | 1070, 1324 |
| BanI | GGYRCC | 2 cut(s) | 1113, 1246 |
| BbsI | GAAGAC | 4 cut(s) | 312, 800, 1034, 1113 |
| Bbv12I | GWGCWC | 1 cut(s) | 859 |
| BbvI | GCAGC | 2 cut(s) | 1116, 1146 |
| BccI | CCATC | 3 cut(s) | 77, 1224, 1390 |
| BclI | TGATCA | 1 cut(s) | 1209 |
| BcoDI | GTCTC | 4 cut(s) | 266, 827, 943, 1342 |
| BfaI | CTAG | 3 cut(s) | 672, 786, 975 |
| BfmI | CTRYAG | 1 cut(s) | 933 |
| BfoI | RGCGCY | 1 cut(s) | 1250 |
| BisI | GCNGC | 4 cut(s) | 153, 1105, 1152, 1160 |
| BlsI | GCNGC | 4 cut(s) | 154, 1106, 1153, 1161 |
| BmiI | GGNNCC | 4 cut(s) | 1072, 1115, 1248, 1326 |
| BmsI | GCATC | 1 cut(s) | 255 |
| BpiI | GAAGAC | 4 cut(s) | 312, 800, 1034, 1113 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1367 |
| Bpu14I | TTCGAA | 2 cut(s) | 66, 1185 |
| BsaBI | GATNNNNATC | 1 cut(s) | 606 |
| BsaHI | GRCGYC | 1 cut(s) | 1247 |
| BsaJI | CCNNGG | 2 cut(s) | 726, 1132 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 30, 1296 |
| Bse118I | RCCGGY | 4 cut(s) | 23, 336, 1004, 1116 |
| Bse3DI | GCAATG | 1 cut(s) | 116 |
| Bse8I | GATNNNNATC | 1 cut(s) | 606 |
| BseDI | CCNNGG | 2 cut(s) | 726, 1132 |
| BseGI | GGATG | 2 cut(s) | 108, 1382 |
| BseJI | GATNNNNATC | 1 cut(s) | 606 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 30, 1296 |
| BseMI | GCAATG | 1 cut(s) | 116 |
| BseMII | CTCAG | 3 cut(s) | 263, 822, 954 |
| BseRI | GAGGAG | 1 cut(s) | 1149 |
| BseSI | GKGCMC | 2 cut(s) | 859, 956 |
| BseXI | GCAGC | 2 cut(s) | 1116, 1146 |
| BshFI | GGCC | 1 cut(s) | 23 |
| BshNI | GGYRCC | 2 cut(s) | 1113, 1246 |
| BsiHKAI | GWGCWC | 1 cut(s) | 859 |
| BsiSI | CCGG | 5 cut(s) | 24, 337, 497, 1005, 1117 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 30, 1296 |
| BsmAI | GTCTC | 4 cut(s) | 266, 827, 943, 1342 |
| BsnI | GGCC | 1 cut(s) | 23 |
| Bsp119I | TTCGAA | 2 cut(s) | 66, 1185 |
| Bsp1286I | GDGCHC | 2 cut(s) | 859, 956 |
| Bsp143I | GATC | 5 cut(s) | 647, 662, 1070, 1209, 1324 |
| BspACI | CCGC | 4 cut(s) | 153, 268, 364, 1151 |
| BspANI | GGCC | 1 cut(s) | 23 |
| BspCNI | CTCAG | 3 cut(s) | 262, 823, 953 |
| BspHI | TCATGA | 1 cut(s) | 610 |
| BspLI | GGNNCC | 4 cut(s) | 1072, 1115, 1248, 1326 |
| BspPI | GGATC | 4 cut(s) | 1065, 1078, 1319, 1332 |
| BspQI | GCTCTTC | 2 cut(s) | 226, 1182 |
| BspT104I | TTCGAA | 2 cut(s) | 66, 1185 |
| BspT107I | GGYRCC | 2 cut(s) | 1113, 1246 |
| BsrDI | GCAATG | 1 cut(s) | 116 |
| BsrFI | RCCGGY | 4 cut(s) | 23, 336, 1004, 1116 |
| BssAI | RCCGGY | 4 cut(s) | 23, 336, 1004, 1116 |
| BssECI | CCNNGG | 2 cut(s) | 726, 1132 |
| BssMI | GATC | 5 cut(s) | 647, 662, 1070, 1209, 1324 |
| BssNI | GRCGYC | 1 cut(s) | 1247 |
| BssT1I | CCWWGG | 1 cut(s) | 726 |
| Bst4CI | ACNGT | 4 cut(s) | 49, 547, 916, 981 |
| Bst6I | CTCTTC | 3 cut(s) | 226, 317, 1182 |
| BstACI | GRCGYC | 1 cut(s) | 1247 |
| BstBI | TTCGAA | 2 cut(s) | 66, 1185 |
| BstC8I | GCNNGC | 1 cut(s) | 25 |
| BstDEI | CTNAG | 5 cut(s) | 249, 698, 831, 940, 1367 |
| BstF5I | GGATG | 2 cut(s) | 108, 1382 |
| BstH2I | RGCGCY | 1 cut(s) | 1250 |
| BstHHI | GCGC | 1 cut(s) | 1249 |
| BstKTI | GATC | 5 cut(s) | 650, 665, 1073, 1212, 1327 |
| BstMAI | GTCTC | 4 cut(s) | 266, 827, 943, 1342 |
| BstMBI | GATC | 5 cut(s) | 647, 662, 1070, 1209, 1324 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 827, 1113 |
| BstSFI | CTRYAG | 1 cut(s) | 933 |
| BstSLI | GKGCMC | 2 cut(s) | 859, 956 |
| BstV1I | GCAGC | 2 cut(s) | 1116, 1146 |
| BstV2I | GAAGAC | 4 cut(s) | 312, 800, 1034, 1113 |
| BstX2I | RGATCY | 2 cut(s) | 1070, 1324 |
| BstYI | RGATCY | 2 cut(s) | 1070, 1324 |
| BsuRI | GGCC | 1 cut(s) | 23 |
| BtsCI | GGATG | 2 cut(s) | 108, 1382 |
| Cac8I | GCNNGC | 1 cut(s) | 25 |
| CciI | TCATGA | 1 cut(s) | 610 |
| CfoI | GCGC | 1 cut(s) | 1249 |
| Cfr10I | RCCGGY | 4 cut(s) | 23, 336, 1004, 1116 |
| CseI | GACGC | 1 cut(s) | 918 |
| Csp6I | GTAC | 1 cut(s) | 618 |
| CviAII | CATG | 3 cut(s) | 533, 611, 1001 |
| CviQI | GTAC | 1 cut(s) | 618 |
| DdeI | CTNAG | 5 cut(s) | 249, 698, 831, 940, 1367 |
| DinI | GGCGCC | 1 cut(s) | 1248 |
| DpnI | GATC | 5 cut(s) | 649, 664, 1072, 1211, 1326 |
| DpnII | GATC | 5 cut(s) | 647, 662, 1070, 1209, 1324 |
| Eam1104I | CTCTTC | 3 cut(s) | 226, 317, 1182 |
| EarI | CTCTTC | 3 cut(s) | 226, 317, 1182 |
| Eco130I | CCWWGG | 1 cut(s) | 726 |
| Eco57I | CTGAAG | 4 cut(s) | 82, 645, 812, 837 |
| EcoRI | GAATTC | 2 cut(s) | 487, 1181 |
| EcoT14I | CCWWGG | 1 cut(s) | 726 |
| EcoT22I | ATGCAT | 1 cut(s) | 534 |
| EgeI | GGCGCC | 1 cut(s) | 1248 |
| EheI | GGCGCC | 1 cut(s) | 1248 |
| ErhI | CCWWGG | 1 cut(s) | 726 |
| FaeI | CATG | 3 cut(s) | 536, 614, 1004 |
| FatI | CATG | 3 cut(s) | 532, 610, 1000 |
| FauI | CCCGC | 1 cut(s) | 261 |
| FauNDI | CATATG | 1 cut(s) | 987 |
| FbaI | TGATCA | 1 cut(s) | 1209 |
| Fnu4HI | GCNGC | 4 cut(s) | 153, 1105, 1152, 1160 |
| FokI | GGATG | 2 cut(s) | 115, 1369 |
| Fsp4HI | GCNGC | 4 cut(s) | 153, 1105, 1152, 1160 |
| FspBI | CTAG | 3 cut(s) | 672, 786, 975 |
| GlaI | GCGC | 1 cut(s) | 1248 |
| GluI | GCNGC | 4 cut(s) | 153, 1105, 1152, 1160 |
| HaeII | RGCGCY | 1 cut(s) | 1250 |
| HaeIII | GGCC | 1 cut(s) | 23 |
| HapII | CCGG | 5 cut(s) | 24, 337, 497, 1005, 1117 |
| HgaI | GACGC | 1 cut(s) | 918 |
| HhaI | GCGC | 1 cut(s) | 1249 |
| Hin1I | GRCGYC | 1 cut(s) | 1247 |
| Hin1II | CATG | 3 cut(s) | 536, 614, 1004 |
| Hin6I | GCGC | 1 cut(s) | 1247 |
| HinP1I | GCGC | 1 cut(s) | 1247 |
| HindIII | AAGCTT | 2 cut(s) | 627, 873 |
| HinfI | GANTC | 3 cut(s) | 500, 962, 1273 |
| HpaII | CCGG | 5 cut(s) | 24, 337, 497, 1005, 1117 |
| HphI | GGTGA | 3 cut(s) | 589, 935, 1019 |
| Hpy166II | GTNNAC | 1 cut(s) | 857 |
| Hpy188III | TCNNGA | 5 cut(s) | 100, 611, 693, 879, 1057 |
| Hpy8I | GTNNAC | 1 cut(s) | 857 |
| Hpy99I | CGWCG | 1 cut(s) | 20 |
| HpyAV | CCTTC | 4 cut(s) | 803, 1139, 1289, 1315 |
| HpyCH4III | ACNGT | 4 cut(s) | 49, 547, 916, 981 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 827, 1113 |
| HpyF3I | CTNAG | 5 cut(s) | 249, 698, 831, 940, 1367 |
| Hsp92I | GRCGYC | 1 cut(s) | 1247 |
| Hsp92II | CATG | 3 cut(s) | 536, 614, 1004 |
| HspAI | GCGC | 1 cut(s) | 1247 |
| KasI | GGCGCC | 1 cut(s) | 1246 |
| KroI | GCCGGC | 1 cut(s) | 23 |
| KroNI | GCCGGC | 1 cut(s) | 25 |
| Ksp22I | TGATCA | 1 cut(s) | 1209 |
| Kzo9I | GATC | 5 cut(s) | 647, 662, 1070, 1209, 1324 |
| LguI | GCTCTTC | 2 cut(s) | 226, 1182 |
| LpnPI | CCDG | 8 cut(s) | 37, 85, 173, 350, 510, 1018, 1051, 1130 |
| Lsp1109I | GCAGC | 2 cut(s) | 1116, 1146 |
| LweI | GCATC | 1 cut(s) | 255 |
| MaeI | CTAG | 3 cut(s) | 672, 786, 975 |
| MaeIII | GTNAC | 3 cut(s) | 517, 916, 1054 |
| MalI | GATC | 5 cut(s) | 649, 664, 1072, 1211, 1326 |
| MboI | GATC | 5 cut(s) | 647, 662, 1070, 1209, 1324 |
| MflI | RGATCY | 2 cut(s) | 1070, 1324 |
| MhlI | GDGCHC | 2 cut(s) | 859, 956 |
| Mly113I | GGCGCC | 1 cut(s) | 1247 |
| MlyI | GAGTC | 1 cut(s) | 494 |
| MmeI | TCCRAC | 1 cut(s) | 150 |
| Mph1103I | ATGCAT | 1 cut(s) | 534 |
| MroNI | GCCGGC | 1 cut(s) | 23 |
| MseI | TTAA | 6 cut(s) | 203, 414, 437, 456, 476, 1395 |
| MslI | CAYNNNNRTG | 2 cut(s) | 527, 1005 |
| MspI | CCGG | 5 cut(s) | 24, 337, 497, 1005, 1117 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 827, 1113 |
| NaeI | GCCGGC | 1 cut(s) | 25 |
| NarI | GGCGCC | 1 cut(s) | 1247 |
| NdeI | CATATG | 1 cut(s) | 987 |
| NdeII | GATC | 5 cut(s) | 647, 662, 1070, 1209, 1324 |
| NgoMIV | GCCGGC | 1 cut(s) | 23 |
| NlaIII | CATG | 3 cut(s) | 536, 614, 1004 |
| NlaIV | GGNNCC | 4 cut(s) | 1072, 1115, 1248, 1326 |
| NmuCI | GTSAC | 2 cut(s) | 916, 1054 |
| NsiI | ATGCAT | 1 cut(s) | 534 |
| NspV | TTCGAA | 2 cut(s) | 66, 1185 |
| PagI | TCATGA | 1 cut(s) | 610 |
| PciSI | GCTCTTC | 2 cut(s) | 226, 1182 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 926 |
| PdiI | GCCGGC | 1 cut(s) | 25 |
| PfeI | GAWTC | 2 cut(s) | 962, 1273 |
| PkrI | GCNGC | 4 cut(s) | 154, 1106, 1153, 1161 |
| PleI | GAGTC | 1 cut(s) | 494 |
| PluTI | GGCGCC | 1 cut(s) | 1250 |
| PpsI | GAGTC | 1 cut(s) | 494 |
| PshBI | ATTAAT | 1 cut(s) | 456 |
| PspN4I | GGNNCC | 4 cut(s) | 1072, 1115, 1248, 1326 |
| PsuI | RGATCY | 2 cut(s) | 1070, 1324 |
| RsaI | GTAC | 1 cut(s) | 619 |
| RsaNI | GTAC | 1 cut(s) | 618 |
| RseI | CAYNNNNRTG | 2 cut(s) | 527, 1005 |
| SapI | GCTCTTC | 2 cut(s) | 226, 1182 |
| SaqAI | TTAA | 6 cut(s) | 203, 414, 437, 456, 476, 1395 |
| SatI | GCNGC | 4 cut(s) | 153, 1105, 1152, 1160 |
| Sau3AI | GATC | 5 cut(s) | 647, 662, 1070, 1209, 1324 |
| SchI | GAGTC | 1 cut(s) | 494 |
| SduI | GDGCHC | 2 cut(s) | 859, 956 |
| SfaNI | GCATC | 1 cut(s) | 255 |
| SfcI | CTRYAG | 1 cut(s) | 933 |
| SfoI | GGCGCC | 1 cut(s) | 1248 |
| SfuI | TTCGAA | 2 cut(s) | 66, 1185 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 527, 1005 |
| SsiI | CCGC | 4 cut(s) | 153, 268, 364, 1151 |
| SspDI | GGCGCC | 1 cut(s) | 1246 |
| SspI | AATATT | 1 cut(s) | 480 |
| SspMI | CTAG | 3 cut(s) | 672, 786, 975 |
| StyI | CCWWGG | 1 cut(s) | 726 |
| TaaI | ACNGT | 4 cut(s) | 49, 547, 916, 981 |
| TaqI | TCGA | 6 cut(s) | 15, 66, 182, 694, 880, 1185 |
| TauI | GCSGC | 2 cut(s) | 155, 1154 |
| TfiI | GAWTC | 2 cut(s) | 962, 1273 |
| Tru1I | TTAA | 6 cut(s) | 203, 414, 437, 456, 476, 1395 |
| Tru9I | TTAA | 6 cut(s) | 203, 414, 437, 456, 476, 1395 |
| TseFI | GTSAC | 2 cut(s) | 916, 1054 |
| TseI | GCWGC | 2 cut(s) | 1104, 1159 |
| Tsp45I | GTSAC | 2 cut(s) | 916, 1054 |
| TspDTI | ATGAA | 5 cut(s) | 477, 600, 753, 884, 1189 |
| TspGWI | ACGGA | 1 cut(s) | 1375 |
| VneI | GTGCAC | 1 cut(s) | 855 |
| VspI | ATTAAT | 1 cut(s) | 456 |
| XapI | RAATTY | 7 cut(s) | 77, 205, 439, 487, 551, 1181, 1195 |
| XspI | CTAG | 3 cut(s) | 672, 786, 975 |
| Zsp2I | ATGCAT | 1 cut(s) | 534 |