FvH4_7g22582

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000278
Physical Location & Seq
Reverse (-)
17779003 .. 17780130
1128 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g22582.t1

Sequence Viewer

Length: 978 bp
ATGGTATCTCATGCCAAGTTGCCTAAGAGCTTTTGGGTTGAAGCTCTGATGACTGCGGTTGATGTGATCAACCTTTCTCCCTCAGCTCCATTGAATGGTGACGTGCCGAACAGGTTTTGGACCGGAAAGAACGTCTTATACAATCATCTGAAGGTATTTGGCTGCAAAGCATTTGTCCACATTCCCAAAGACGAAAGATCGAAGATCGATAGCAAGTCAAAAGAATGCATATTCTTAGGATATGGAAATGAAGAATATGGGTACAGGCTGTGGGATCCTGTCAACAAGAAGATTGTCAGAAGCAGAGATGTTGTCTTTTTTGAATATCAAAACATTGAAGATACTCAGAAGACTGAGAAGCCTAAGAAACCCAGAGAATATCTAGTCAACTCGGATAAAGATTCTCCGCCAACAAAGCAGGATGGCAGGAGAGAAACCGGAGACTCCGATGATGCAGCAAATGACCCGATGATCAATGGTCCAGTTGGTGATACAACTGATGATGAGGAAGAGGCACCAACCCCATGGAGATCAACCAGGGAACGCAGAACCTCAAGAAGATACCCTTCAGATGAGTTTGTTACTCTCACAGATGGAGGAGAACCAGAGTCTTATGAAGAAACTCTGACACGGAGGACTGCAGAGTATACCTTACGACTCACAGTCAAGGCAAGGATAGTCGTGAAAGGTTTCAGTCAGAAAGAGGAGGAAGACATGGCAGTGGAGCTTTATACCTCAGTTGTCAAGAGTCTGATGTATGCGATGGTGTGCGCAAGACCAGACGTAACAGACGCAGTTGGCGTTGTTAGCAGAGATTTGTCTATTTCAGACAAAGAGCATCGATATGCTGTGAAGCGGATTCTTATAAGTACTTCCAAGATGAGATTATGCTTTGGAAGCGGAAATCCTGAATTGGTTGACTACACAAGTGCAGTTATGGCGAGAGATGATGACTCGATCGAGAAAGTCTACATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 gag_pre-integrs rve

Protein Analysis

326

Amino Acids

37.03

Weight (kDa)

5.52

Isoelectric Point (pI)

46.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_retrovirus PF25597 55 - 118 1.9e-25 Retroviral polymerase SH3-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 866
Acc16I TGCGCA 1 cut(s) 772
AccB1I GGYRCC 1 cut(s) 514
AccB7I CCANNNNNTGG 1 cut(s) 95
AccI GTMKAC 2 cut(s) 647, 969
AciI CCGC 4 cut(s) 56, 407, 856, 900
AclWI GGATC 2 cut(s) 269, 282
AcuI CTGAAG 2 cut(s) 170, 552
AfaI GTAC 2 cut(s) 263, 871
AfiI CCNNNNNNNGG 1 cut(s) 95
AgsI TTSAA 4 cut(s) 41, 94, 323, 338
AhdI GACNNNNNGTC 1 cut(s) 662
AjiI CACGTC 1 cut(s) 103
AjnI CCWGG 1 cut(s) 536
AluBI AGCT 4 cut(s) 30, 44, 86, 727
AluI AGCT 4 cut(s) 30, 44, 86, 727
Alw26I GTCTC 1 cut(s) 435
AlwI GGATC 2 cut(s) 269, 282
ApeKI GCWGC 2 cut(s) 162, 455
ArsI GACNNNNNNTTYG 2 cut(s) 159, 191
Asp700I GAANNNNTTC 1 cut(s) 689
AspLEI GCGC 1 cut(s) 773
AspS9I GGNCC 2 cut(s) 120, 479
AsuHPI GGTGA 2 cut(s) 110, 500
AvaII GGWCC 2 cut(s) 120, 479
BamHI GGATCC 1 cut(s) 274
BanI GGYRCC 1 cut(s) 514
BbsI GAAGAC 2 cut(s) 356, 717
BbvCI CCTCAGC 1 cut(s) 82
BbvI GCAGC 2 cut(s) 149, 467
BccI CCATC 3 cut(s) 416, 587, 757
BciT130I CCWGG 1 cut(s) 538
BclI TGATCA 2 cut(s) 66, 471
BcoDI GTCTC 1 cut(s) 435
BfaI CTAG 2 cut(s) 383, 976
BfmI CTRYAG 1 cut(s) 639
BisI GCNGC 2 cut(s) 163, 456
BlsI GCNGC 2 cut(s) 164, 457
BmcAI AGTACT 1 cut(s) 871
Bme1390I CCNGG 1 cut(s) 538
Bme18I GGWCC 2 cut(s) 120, 479
BmeRI GACNNNNNGTC 1 cut(s) 662
BmgBI CACGTC 1 cut(s) 103
BmgT120I GGNCC 2 cut(s) 120, 479
BmiI GGNNCC 2 cut(s) 276, 516
BmrFI CCNGG 1 cut(s) 538
BmsI GCATC 2 cut(s) 442, 847
BpiI GAAGAC 2 cut(s) 356, 717
Bpu10I CCTNAGC 1 cut(s) 82
BpuEI CTTGAG 1 cut(s) 538
Bsa29I ATCGAT 2 cut(s) 207, 841
BsaJI CCNNGG 2 cut(s) 524, 537
BsaWI WCCGGW 2 cut(s) 122, 437
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse1I ACTGG 1 cut(s) 482
BseBI CCWGG 1 cut(s) 538
BseCI ATCGAT 2 cut(s) 207, 841
BseDI CCNNGG 2 cut(s) 524, 537
BseGI GGATG 1 cut(s) 427
BseLI CCNNNNNNNGG 1 cut(s) 95
BseMII CTCAG 4 cut(s) 96, 345, 359, 750
BseNI ACTGG 1 cut(s) 482
BseRI GAGGAG 2 cut(s) 612, 719
BseXI GCAGC 2 cut(s) 149, 467
BsgI GTGCAG 1 cut(s) 951
Bsh1285I CGRYCG 1 cut(s) 960
BshNI GGYRCC 1 cut(s) 514
BshVI ATCGAT 2 cut(s) 207, 841
BsiEI CGRYCG 1 cut(s) 960
BsiSI CCGG 2 cut(s) 123, 438
BslI CCNNNNNNNGG 1 cut(s) 95
BsmAI GTCTC 1 cut(s) 435
BsmI GAATGC 1 cut(s) 230
Bsp143I GATC 7 cut(s) 66, 197, 204, 274, 471, 530, 957
Bsp19I CCATGG 1 cut(s) 524
BspACI CCGC 4 cut(s) 56, 407, 856, 900
BspCNI CTCAG 4 cut(s) 95, 346, 358, 749
BspDI ATCGAT 2 cut(s) 207, 841
BspLI GGNNCC 2 cut(s) 276, 516
BspMAI CTGCAG 1 cut(s) 643
BspPI GGATC 2 cut(s) 269, 282
BspT107I GGYRCC 1 cut(s) 514
BsrI ACTGG 1 cut(s) 482
BssECI CCNNGG 2 cut(s) 524, 537
BssMI GATC 7 cut(s) 66, 197, 204, 274, 471, 530, 957
BssNAI GTATAC 1 cut(s) 648
BssT1I CCWWGG 1 cut(s) 524
Bst1107I GTATAC 1 cut(s) 648
Bst2UI CCWGG 1 cut(s) 538
Bst4CI ACNGT 1 cut(s) 664
Bst6I CTCTTC 1 cut(s) 504
BstDEI CTNAG 7 cut(s) 24, 82, 235, 345, 354, 363, 736
BstDSI CCRYGG 1 cut(s) 524
BstF5I GGATG 1 cut(s) 427
BstHHI GCGC 1 cut(s) 773
BstKTI GATC 7 cut(s) 69, 200, 207, 277, 474, 533, 960
BstMAI GTCTC 1 cut(s) 435
BstMBI GATC 7 cut(s) 66, 197, 204, 274, 471, 530, 957
BstMCI CGRYCG 1 cut(s) 960
BstMWI GCNNNNNNNGC 4 cut(s) 415, 807, 897, 938
BstNI CCWGG 1 cut(s) 538
BstSCI CCNGG 1 cut(s) 536
BstSFI CTRYAG 1 cut(s) 639
BstV1I GCAGC 2 cut(s) 149, 467
BstV2I GAAGAC 2 cut(s) 356, 717
BstX2I RGATCY 1 cut(s) 274
BstXI CCANNNNNNTGG 1 cut(s) 525
BstYI RGATCY 1 cut(s) 274
BstZ17I GTATAC 1 cut(s) 648
Bsu15I ATCGAT 2 cut(s) 207, 841
BsuTUI ATCGAT 2 cut(s) 207, 841
BtgI CCRYGG 1 cut(s) 524
BtgZI GCGATG 1 cut(s) 776
BtrI CACGTC 1 cut(s) 103
BtsCI GGATG 1 cut(s) 427
BtsI GCAGTG 1 cut(s) 726
BtsIMutI CAGTG 1 cut(s) 726
CfoI GCGC 1 cut(s) 773
Cfr13I GGNCC 2 cut(s) 120, 479
ClaI ATCGAT 2 cut(s) 207, 841
CseI GACGC 1 cut(s) 800
Csp6I GTAC 2 cut(s) 262, 870
CviAII CATG 3 cut(s) 11, 525, 715
CviJI RGCY 7 cut(s) 30, 44, 86, 162, 268, 361, 727
CviKI_1 RGCY 7 cut(s) 30, 44, 86, 162, 268, 361, 727
CviQI GTAC 2 cut(s) 262, 870
DdeI CTNAG 7 cut(s) 24, 82, 235, 345, 354, 363, 736
DpnI GATC 7 cut(s) 68, 199, 206, 276, 473, 532, 959
DpnII GATC 7 cut(s) 66, 197, 204, 274, 471, 530, 957
DriI GACNNNNNGTC 1 cut(s) 662
Eam1104I CTCTTC 1 cut(s) 504
Eam1105I GACNNNNNGTC 1 cut(s) 662
EarI CTCTTC 1 cut(s) 504
EciI GGCGGA 1 cut(s) 396
Eco130I CCWWGG 1 cut(s) 524
Eco47I GGWCC 2 cut(s) 120, 479
Eco57I CTGAAG 2 cut(s) 170, 552
EcoRII CCWGG 1 cut(s) 536
EcoT14I CCWWGG 1 cut(s) 524
EcoT22I ATGCAT 1 cut(s) 230
ErhI CCWWGG 1 cut(s) 524
FaeI CATG 3 cut(s) 14, 528, 718
FalI AAGNNNNNCTT 4 cut(s) 119, 151, 550, 582
FatI CATG 3 cut(s) 10, 524, 714
FbaI TGATCA 2 cut(s) 66, 471
FblI GTMKAC 2 cut(s) 647, 969
Fnu4HI GCNGC 2 cut(s) 163, 456
FokI GGATG 1 cut(s) 434
Fsp4HI GCNGC 2 cut(s) 163, 456
FspBI CTAG 2 cut(s) 383, 976
FspI TGCGCA 1 cut(s) 772
GlaI GCGC 1 cut(s) 772
GluI GCNGC 2 cut(s) 163, 456
HapII CCGG 2 cut(s) 123, 438
HgaI GACGC 1 cut(s) 800
HhaI GCGC 1 cut(s) 773
Hin1II CATG 3 cut(s) 14, 528, 718
Hin6I GCGC 1 cut(s) 771
HinP1I GCGC 1 cut(s) 771
HincII GTYRAC 3 cut(s) 283, 388, 919
HindII GTYRAC 3 cut(s) 283, 388, 919
HinfI GANTC 7 cut(s) 401, 443, 608, 657, 748, 859, 953
HpaII CCGG 2 cut(s) 123, 438
HphI GGTGA 2 cut(s) 110, 500
Hpy166II GTNNAC 6 cut(s) 178, 283, 388, 648, 919, 970
Hpy188III TCNNGA 5 cut(s) 555, 682, 745, 908, 961
Hpy8I GTNNAC 6 cut(s) 178, 283, 388, 648, 919, 970
HpyAV CCTTC 2 cut(s) 145, 576
HpyCH4III ACNGT 1 cut(s) 664
HpyCH4IV ACGT 3 cut(s) 102, 132, 783
HpyCH4V TGCA 5 cut(s) 165, 228, 455, 641, 932
HpyF10VI GCNNNNNNNGC 4 cut(s) 415, 807, 897, 938
HpyF3I CTNAG 7 cut(s) 24, 82, 235, 345, 354, 363, 736
HpySE526I ACGT 3 cut(s) 102, 132, 783
Hsp92II CATG 3 cut(s) 14, 528, 718
HspAI GCGC 1 cut(s) 771
Ksp22I TGATCA 2 cut(s) 66, 471
Kzo9I GATC 7 cut(s) 66, 197, 204, 274, 471, 530, 957
LmnI GCTCC 2 cut(s) 91, 724
Lsp1109I GCAGC 2 cut(s) 149, 467
LweI GCATC 2 cut(s) 442, 847
MaeI CTAG 2 cut(s) 383, 976
MaeII ACGT 3 cut(s) 102, 132, 783
MaeIII GTNAC 3 cut(s) 98, 580, 784
MalI GATC 7 cut(s) 68, 199, 206, 276, 473, 532, 959
MboI GATC 7 cut(s) 66, 197, 204, 274, 471, 530, 957
MboII GAAGA 9 cut(s) 214, 263, 301, 350, 361, 521, 570, 629, 722
MflI RGATCY 1 cut(s) 274
MluCI AATT 1 cut(s) 911
MlyI GAGTC 5 cut(s) 437, 617, 651, 757, 947
MnlI CCTC 9 cut(s) 91, 499, 505, 562, 590, 627, 697, 700, 745
Mph1103I ATGCAT 1 cut(s) 230
MroXI GAANNNNTTC 1 cut(s) 689
MslI CAYNNNNRTG 2 cut(s) 719, 843
MspI CCGG 2 cut(s) 123, 438
MspR9I CCNGG 1 cut(s) 538
Mva1269I GAATGC 1 cut(s) 230
MvaI CCWGG 1 cut(s) 538
MwoI GCNNNNNNNGC 4 cut(s) 415, 807, 897, 938
NcoI CCATGG 1 cut(s) 524
NdeII GATC 7 cut(s) 66, 197, 204, 274, 471, 530, 957
NlaIII CATG 3 cut(s) 14, 528, 718
NlaIV GGNNCC 2 cut(s) 276, 516
NmuCI GTSAC 1 cut(s) 98
NsbI TGCGCA 1 cut(s) 772
NsiI ATGCAT 1 cut(s) 230
PcsI WCGNNNNNNNCGW 1 cut(s) 798
PctI GAATGC 1 cut(s) 230
PdmI GAANNNNTTC 1 cut(s) 689
PfeI GAWTC 2 cut(s) 401, 859
PflMI CCANNNNNTGG 1 cut(s) 95
PkrI GCNGC 2 cut(s) 164, 457
Ple19I CGATCG 1 cut(s) 960
PleI GAGTC 5 cut(s) 437, 616, 651, 756, 947
PpsI GAGTC 5 cut(s) 437, 616, 651, 756, 947
PsiI TTATAA 1 cut(s) 866
Psp6I CCWGG 1 cut(s) 536
PspGI CCWGG 1 cut(s) 536
PspN4I GGNNCC 2 cut(s) 276, 516
PspPI GGNCC 2 cut(s) 120, 479
PsrI GAACNNNNNNTAC 2 cut(s) 122, 154
PstI CTGCAG 1 cut(s) 643
PsuI RGATCY 1 cut(s) 274
PvuI CGATCG 1 cut(s) 960
RsaI GTAC 2 cut(s) 263, 871
RsaNI GTAC 2 cut(s) 262, 870
RseI CAYNNNNRTG 2 cut(s) 719, 843
SatI GCNGC 2 cut(s) 163, 456
Sau3AI GATC 7 cut(s) 66, 197, 204, 274, 471, 530, 957
Sau96I GGNCC 2 cut(s) 120, 479
ScaI AGTACT 1 cut(s) 871
SchI GAGTC 5 cut(s) 437, 617, 651, 757, 947
ScrFI CCNGG 1 cut(s) 538
SfaNI GCATC 2 cut(s) 442, 847
SfcI CTRYAG 1 cut(s) 639
SinI GGWCC 2 cut(s) 120, 479
SmiMI CAYNNNNRTG 2 cut(s) 719, 843
SmlI CTYRAG 1 cut(s) 553
SmoI CTYRAG 1 cut(s) 553
Sse9I AATT 1 cut(s) 911
SsiI CCGC 4 cut(s) 56, 407, 856, 900
SspMI CTAG 2 cut(s) 383, 976
StyD4I CCNGG 1 cut(s) 536
StyI CCWWGG 1 cut(s) 524
TaaI ACNGT 1 cut(s) 664
TaiI ACGT 3 cut(s) 105, 135, 786
TaqI TCGA 5 cut(s) 200, 207, 841, 956, 960
TasI AATT 1 cut(s) 911
TatI WGTACW 1 cut(s) 869
TfiI GAWTC 2 cut(s) 401, 859
TscAI CASTG 1 cut(s) 726
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 2 cut(s) 162, 455
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 2 cut(s) 264, 630
TspGWI ACGGA 1 cut(s) 646
TspRI CASTG 1 cut(s) 726
Van91I CCANNNNNTGG 1 cut(s) 95
VpaK11BI GGWCC 2 cut(s) 120, 479
XmiI GTMKAC 2 cut(s) 647, 969
XmnI GAANNNNTTC 1 cut(s) 689
XspI CTAG 2 cut(s) 383, 976
ZrmI AGTACT 1 cut(s) 871
Zsp2I ATGCAT 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.