FvH4_5g30343

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000278
Physical Location & Seq
Reverse (-)
21245509 .. 21246332
824 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g30343.t1

Sequence Viewer

Length: 762 bp
ATGGTTAACGGCGTTGTTGACGAAGATAAAAAGAAAGGGATCAAGTTGCCTTCAGGTTCGGGTTCTTCACATGCTAAGCCATCAATTGGCAATGCCAAATTTGAAGTTGAGAAGTTCGATGGAACAAATAATTTTGGCATGTGGCAGTGTGAGATGATGGATGTCTTGTGTCAACAAGAATTAGATATAGCTCTTGAAGACAAACCAGCAGATATGAGTGAGGCGCAGTGGAAGCAGATTAATAAGGAGACTTCAGCAAAGGAGTTGTGGAAGAAACTGGAAGATCAGTGCATGATAAAGAGTGCAGAAAACCGGTTTCACCTGAAGAGGAGGCTTTTCCGATTTGACTACAGACAAGGTATTTCTATGTCTGAACACATCAGTGATTTCAATAAGATACTTGCAAATTTGGTTAATTTGGATGTGCAAATTAATGATGAGGATAAAGCTTTGTGTTTGCTAAATTCTCTTCCTGACGAGTATGAGCATTTGATTACAACTTTGTTGCATGGAAAGAATGAAGTGAAATTTGATGATGTGTGTAATTCATTGATTAATAATGAATGTCGGAAGAAGGAGAAGCAGTTGCAAAAGGTGTCAAGTGAACCACTTGTGGCAAGAGGAAGACCTGATGATAGAAAATTTGGTGGAAATAGAGGTAAATCTCGTTCCAAGTCCAGAGGTAAATATCCTGCAAAAGATGTGTGCCTTTTGTCGTCAAAAGGGGCATTGGAAGAAAGATTGTCCCAAGTTGAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

254

Amino Acids

28.84

Weight (kDa)

6.96

Isoelectric Point (pI)

39.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 71 - 194 6.3e-27 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 86
AclWI GGATC 1 cut(s) 47
AcsI RAATTY 5 cut(s) 98, 406, 463, 527, 641
AcuI CTGAAG 3 cut(s) 36, 237, 344
AfiI CCNNNNNNNGG 1 cut(s) 86
AgeI ACCGGT 1 cut(s) 312
AgsI TTSAA 4 cut(s) 104, 197, 391, 755
AleI CACNNNNGTG 1 cut(s) 381
AluBI AGCT 2 cut(s) 191, 449
AluI AGCT 2 cut(s) 191, 449
Alw26I GTCTC 1 cut(s) 242
AlwI GGATC 1 cut(s) 47
ApoI RAATTY 5 cut(s) 98, 406, 463, 527, 641
AseI ATTAAT 3 cut(s) 240, 432, 555
AsiGI ACCGGT 1 cut(s) 312
AspLEI GCGC 1 cut(s) 226
AsuHPI GGTGA 1 cut(s) 311
BbsI GAAGAC 2 cut(s) 204, 631
BccI CCATC 3 cut(s) 88, 113, 151
BceAI ACGGC 1 cut(s) 25
BcoDI GTCTC 1 cut(s) 242
BfmI CTRYAG 1 cut(s) 349
BlpI GCTNAGC 1 cut(s) 75
BpiI GAAGAC 2 cut(s) 204, 631
Bpu1102I GCTNAGC 1 cut(s) 75
BsaWI WCCGGW 1 cut(s) 312
BsaXI ACNNNNNCTCC 2 cut(s) 569, 599
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse118I RCCGGY 1 cut(s) 312
Bse1I ACTGG 1 cut(s) 282
Bse3DI GCAATG 1 cut(s) 97
BseGI GGATG 2 cut(s) 166, 427
BseLI CCNNNNNNNGG 1 cut(s) 86
BseMI GCAATG 1 cut(s) 97
BseNI ACTGG 1 cut(s) 282
BseRI GAGGAG 1 cut(s) 343
BsgI GTGCAG 1 cut(s) 324
BshTI ACCGGT 1 cut(s) 312
BsiSI CCGG 1 cut(s) 313
BslFI GGGAC 1 cut(s) 730
BslI CCNNNNNNNGG 1 cut(s) 86
BsmAI GTCTC 1 cut(s) 242
BsmFI GGGAC 1 cut(s) 730
Bsp143I GATC 2 cut(s) 39, 283
Bsp1720I GCTNAGC 1 cut(s) 75
BspPI GGATC 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 97
BsrFI RCCGGY 1 cut(s) 312
BsrI ACTGG 1 cut(s) 282
BssAI RCCGGY 1 cut(s) 312
BssMI GATC 2 cut(s) 39, 283
Bst6I CTCTTC 2 cut(s) 320, 474
BstDEI CTNAG 1 cut(s) 75
BstF5I GGATG 2 cut(s) 166, 427
BstHHI GCGC 1 cut(s) 226
BstKTI GATC 2 cut(s) 42, 286
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 2 cut(s) 39, 283
BstMWI GCNNNNNNNGC 1 cut(s) 232
BstNSI RCATGY 2 cut(s) 74, 142
BstSFI CTRYAG 1 cut(s) 349
BstV2I GAAGAC 2 cut(s) 204, 631
BtsCI GGATG 2 cut(s) 166, 427
BtsI GCAGTG 2 cut(s) 152, 233
BtsIMutI CAGTG 4 cut(s) 152, 233, 293, 388
CfoI GCGC 1 cut(s) 226
Cfr10I RCCGGY 1 cut(s) 312
CspAI ACCGGT 1 cut(s) 312
CviAII CATG 4 cut(s) 71, 139, 292, 509
CviJI RGCY 4 cut(s) 79, 191, 334, 449
CviKI_1 RGCY 4 cut(s) 79, 191, 334, 449
DdeI CTNAG 1 cut(s) 75
DpnI GATC 2 cut(s) 41, 285
DpnII GATC 2 cut(s) 39, 283
Eam1104I CTCTTC 2 cut(s) 320, 474
EarI CTCTTC 2 cut(s) 320, 474
Eco57I CTGAAG 3 cut(s) 36, 237, 344
FaeI CATG 4 cut(s) 74, 142, 295, 512
FaiI YATR 8 cut(s) 72, 140, 188, 215, 293, 368, 483, 510
FaqI GGGAC 1 cut(s) 730
FatI CATG 4 cut(s) 70, 138, 291, 508
FokI GGATG 2 cut(s) 173, 434
GlaI GCGC 1 cut(s) 225
HapII CCGG 1 cut(s) 313
HhaI GCGC 1 cut(s) 226
Hin1II CATG 4 cut(s) 74, 142, 295, 512
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HincII GTYRAC 3 cut(s) 7, 19, 173
HindII GTYRAC 3 cut(s) 7, 19, 173
HindIII AAGCTT 1 cut(s) 447
HpaI GTTAAC 1 cut(s) 7
HpaII CCGG 1 cut(s) 313
HphI GGTGA 1 cut(s) 311
Hpy166II GTNNAC 4 cut(s) 7, 19, 173, 605
Hpy188I TCNGA 3 cut(s) 341, 373, 570
Hpy188III TCNNGA 3 cut(s) 194, 473, 678
Hpy8I GTNNAC 4 cut(s) 7, 19, 173, 605
HpyAV CCTTC 2 cut(s) 60, 568
HpyCH4V TGCA 7 cut(s) 291, 305, 404, 427, 508, 589, 695
HpyF10VI GCNNNNNNNGC 1 cut(s) 232
HpyF3I CTNAG 1 cut(s) 75
Hsp92II CATG 4 cut(s) 74, 142, 295, 512
HspAI GCGC 1 cut(s) 224
KspAI GTTAAC 1 cut(s) 7
Kzo9I GATC 2 cut(s) 39, 283
LpnPI CCDG 9 cut(s) 39, 219, 263, 326, 335, 486, 642, 691, 705
MalI GATC 2 cut(s) 41, 285
MboI GATC 2 cut(s) 39, 283
MfeI CAATTG 1 cut(s) 84
MmeI TCCRAC 1 cut(s) 548
MnlI CCTC 7 cut(s) 214, 321, 324, 433, 614, 650, 674
MseI TTAA 5 cut(s) 6, 240, 414, 432, 555
MslI CAYNNNNRTG 1 cut(s) 381
MspI CCGG 1 cut(s) 313
MunI CAATTG 1 cut(s) 84
MwoI GCNNNNNNNGC 1 cut(s) 232
NdeII GATC 2 cut(s) 39, 283
NlaIII CATG 4 cut(s) 74, 142, 295, 512
NspI RCATGY 2 cut(s) 74, 142
OliI CACNNNNGTG 1 cut(s) 381
PflMI CCANNNNNTGG 1 cut(s) 86
PinAI ACCGGT 1 cut(s) 312
PshBI ATTAAT 3 cut(s) 240, 432, 555
PsrI GAACNNNNNNTAC 2 cut(s) 652, 684
RseI CAYNNNNRTG 1 cut(s) 381
SaqAI TTAA 5 cut(s) 6, 240, 414, 432, 555
Sau3AI GATC 2 cut(s) 39, 283
SetI ASST 9 cut(s) 58, 193, 324, 361, 451, 597, 631, 661, 685
SfcI CTRYAG 1 cut(s) 349
SmiMI CAYNNNNRTG 1 cut(s) 381
TaqI TCGA 1 cut(s) 117
Tru1I TTAA 5 cut(s) 6, 240, 414, 432, 555
Tru9I TTAA 5 cut(s) 6, 240, 414, 432, 555
TscAI CASTG 4 cut(s) 152, 233, 293, 388
TspDTI ATGAA 3 cut(s) 534, 537, 576
TspRI CASTG 4 cut(s) 152, 233, 293, 388
Van91I CCANNNNNTGG 1 cut(s) 86
VspI ATTAAT 3 cut(s) 240, 432, 555
XapI RAATTY 5 cut(s) 98, 406, 463, 527, 641
XceI RCATGY 2 cut(s) 74, 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.