Rh4CG176200

Cell division cycle

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000278
Physical Location & Seq
Reverse (-)
38407350 .. 38408753
1404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG176200.1

Sequence Viewer

Length: 786 bp
ATGGCGACGAAGTACGAAATGGAGAAGTTCAATGGGAACAATTTCTCATTGTGGAAAATGAGGATAAAAGCAGTCTTGAGAAAAGATAACTGCTTGGCAGCAATTGGAGATAGGCTTGAGGAGATCACTGACGATGGCAAGTGGAACAAGACGGATGGCAATGCGATTGCTAATCTGCATCTAGCACTAGCCGATGAAGTATTGTCAAGTGTGGCGGAGAAGAAGACGGCAAAAGAGATATGGGATACACTAACAAAATTGTACGAGGCCAAATCACTACACAACAAAATCTTCTTGAAGAGAAAGCTTTACACCCTACGGATGATGGAGTCGACTACAATGACCGACCACATCAACACCTTGTTCTCACAGCTCACAGCAATGGGGCATAACATAGAGACGGGTGAACGTGTTGAAATTCTACTTCAAAGTCTACCTGATTCATATGATCAACTCATCATCAACTTAACCAACAATCTAGAAATACTAGTCTTCGATGATATTGCAGCTGCGGTTCTTGAAGAAGAAAGTCGGTGCAAGAGCAAAGAAGATAGATTGGGTGGCTCACAGCAGGCCGAAGCTTTGATGATAGAGAGAGGGAGATCAACGGAACATGGCCCCAGTGGGAGTCAAAGTCAGAGTAGATCAAAATCCAGAAGTACGAAGAATGTCAAGTGTCATCACTGTGGCAAGAAAGGGCACTACAAAAGGGAGTGTTGGCGTCTCAAGAAGAATGAAGAAACCAAAGAAAAAGGTCCTGAGCATCAAGAGCTCAGGGTTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 ko04114 ko04120 ko05166 ko05203 map04110 map04111 map04113 map04114 map04120 map05166 map05203
Pfam Domains
Protein Families
ANAPC4_WD40 WD40

Protein Analysis

261

Amino Acids

29.82

Weight (kDa)

8.47

Isoelectric Point (pI)

58.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 43 - 183 5.5e-31 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 332, 433
AciI CCGC 2 cut(s) 215, 512
AcsI RAATTY 1 cut(s) 417
AcyI GRCGYC 1 cut(s) 721
AfaI GTAC 3 cut(s) 14, 263, 661
AflIII ACRYGT 1 cut(s) 409
AgsI TTSAA 5 cut(s) 31, 298, 416, 428, 521
AhlI ACTAGT 1 cut(s) 487
AluBI AGCT 5 cut(s) 307, 373, 509, 581, 772
AluI AGCT 5 cut(s) 307, 373, 509, 581, 772
Alw21I GWGCWC 1 cut(s) 774
Alw26I GTCTC 2 cut(s) 392, 728
AoxI GGCC 3 cut(s) 267, 573, 616
ApeKI GCWGC 3 cut(s) 98, 506, 509
ApoI RAATTY 1 cut(s) 417
Asp700I GAANNNNTTC 1 cut(s) 41
AspS9I GGNCC 2 cut(s) 617, 755
AsuHPI GGTGA 1 cut(s) 416
AvaII GGWCC 1 cut(s) 755
BaeGI GKGCMC 1 cut(s) 702
BanII GRGCYC 1 cut(s) 774
BbsI GAAGAC 2 cut(s) 230, 484
Bbv12I GWGCWC 1 cut(s) 774
BbvI GCAGC 3 cut(s) 110, 496, 518
BccI CCATC 3 cut(s) 128, 149, 319
BceAI ACGGC 1 cut(s) 243
BcgI CGANNNNNNTGC 2 cut(s) 485, 519
BciVI GTATCC 1 cut(s) 238
BclI TGATCA 1 cut(s) 448
BcoDI GTCTC 2 cut(s) 392, 728
BcuI ACTAGT 1 cut(s) 487
BfaI CTAG 4 cut(s) 182, 188, 479, 488
BfuI GTATCC 1 cut(s) 238
BisI GCNGC 3 cut(s) 99, 507, 510
BlsI GCNGC 3 cut(s) 100, 508, 511
Bme18I GGWCC 1 cut(s) 755
BmgT120I GGNCC 2 cut(s) 617, 755
BmiI GGNNCC 1 cut(s) 619
BmrI ACTGGG 1 cut(s) 615
BmsI GCATC 2 cut(s) 187, 772
BmuI ACTGGG 1 cut(s) 615
BpiI GAAGAC 2 cut(s) 230, 484
Bpu10I CCTNAGC 2 cut(s) 759, 773
BpuEI CTTGAG 3 cut(s) 97, 137, 710
BsaBI GATNNNNATC 1 cut(s) 649
BsaHI GRCGYC 1 cut(s) 721
BsaXI ACNNNNNCTCC 2 cut(s) 619, 649
Bse1I ACTGG 1 cut(s) 621
Bse3DI GCAATG 2 cut(s) 166, 387
Bse8I GATNNNNATC 1 cut(s) 649
BseGI GGATG 2 cut(s) 160, 327
BseJI GATNNNNATC 1 cut(s) 649
BseMI GCAATG 2 cut(s) 166, 387
BseMII CTCAG 1 cut(s) 750
BseNI ACTGG 1 cut(s) 621
BseRI GAGGAG 1 cut(s) 134
BseSI GKGCMC 1 cut(s) 702
BseXI GCAGC 3 cut(s) 110, 496, 518
BshFI GGCC 3 cut(s) 269, 575, 618
BsiHKAI GWGCWC 1 cut(s) 774
BsmAI GTCTC 2 cut(s) 392, 728
BsmBI CGTCTC 2 cut(s) 392, 728
BsnI GGCC 3 cut(s) 269, 575, 618
Bsp1286I GDGCHC 2 cut(s) 702, 774
Bsp143I GATC 4 cut(s) 123, 448, 602, 644
BspACI CCGC 2 cut(s) 215, 512
BspANI GGCC 3 cut(s) 269, 575, 618
BspCNI CTCAG 2 cut(s) 751, 786
BspLI GGNNCC 1 cut(s) 619
BsrDI GCAATG 2 cut(s) 166, 387
BsrI ACTGG 1 cut(s) 621
BssMI GATC 4 cut(s) 123, 448, 602, 644
BssNI GRCGYC 1 cut(s) 721
Bst4CI ACNGT 1 cut(s) 686
Bst6I CTCTTC 1 cut(s) 293
BstACI GRCGYC 1 cut(s) 721
BstC8I GCNNGC 1 cut(s) 573
BstDEI CTNAG 2 cut(s) 759, 773
BstF5I GGATG 2 cut(s) 160, 327
BstKTI GATC 4 cut(s) 126, 451, 605, 647
BstMAI GTCTC 2 cut(s) 392, 728
BstMBI GATC 4 cut(s) 123, 448, 602, 644
BstMWI GCNNNNNNNGC 1 cut(s) 769
BstSLI GKGCMC 1 cut(s) 702
BstV1I GCAGC 3 cut(s) 110, 496, 518
BstV2I GAAGAC 2 cut(s) 230, 484
BsuI GTATCC 1 cut(s) 238
BsuRI GGCC 3 cut(s) 269, 575, 618
BtsCI GGATG 2 cut(s) 160, 327
BtsIMutI CAGTG 3 cut(s) 126, 628, 682
Cac8I GCNNGC 1 cut(s) 573
Cfr13I GGNCC 2 cut(s) 617, 755
CseI GACGC 1 cut(s) 710
Csp6I GTAC 3 cut(s) 13, 262, 660
CviAII CATG 1 cut(s) 614
CviQI GTAC 3 cut(s) 13, 262, 660
DdeI CTNAG 2 cut(s) 759, 773
DpnI GATC 4 cut(s) 125, 450, 604, 646
DpnII GATC 4 cut(s) 123, 448, 602, 644
Eam1104I CTCTTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 293
EciI GGCGGA 1 cut(s) 230
Ecl136II GAGCTC 1 cut(s) 772
Eco24I GRGCYC 1 cut(s) 774
Eco47I GGWCC 1 cut(s) 755
Eco53kI GAGCTC 1 cut(s) 772
EcoICRI GAGCTC 1 cut(s) 772
EcoO109I RGGNCCY 1 cut(s) 755
EcoT38I GRGCYC 1 cut(s) 774
Esp3I CGTCTC 2 cut(s) 392, 728
FaeI CATG 1 cut(s) 617
FaiI YATR 6 cut(s) 241, 390, 395, 445, 447, 615
FatI CATG 1 cut(s) 613
FauNDI CATATG 1 cut(s) 445
FbaI TGATCA 1 cut(s) 448
FblI GTMKAC 2 cut(s) 332, 433
Fnu4HI GCNGC 3 cut(s) 99, 507, 510
FokI GGATG 2 cut(s) 167, 334
FriOI GRGCYC 1 cut(s) 774
Fsp4HI GCNGC 3 cut(s) 99, 507, 510
FspBI CTAG 4 cut(s) 182, 188, 479, 488
GluI GCNGC 3 cut(s) 99, 507, 510
HaeIII GGCC 3 cut(s) 269, 575, 618
HgaI GACGC 1 cut(s) 710
Hin1I GRCGYC 1 cut(s) 721
Hin1II CATG 1 cut(s) 617
HincII GTYRAC 1 cut(s) 333
HindII GTYRAC 1 cut(s) 333
HindIII AAGCTT 2 cut(s) 305, 579
HinfI GANTC 3 cut(s) 329, 440, 628
HphI GGTGA 1 cut(s) 416
Hpy166II GTNNAC 3 cut(s) 333, 407, 434
Hpy188I TCNGA 1 cut(s) 639
Hpy188III TCNNGA 8 cut(s) 76, 295, 479, 518, 654, 727, 758, 767
Hpy8I GTNNAC 3 cut(s) 333, 407, 434
Hpy99I CGWCG 1 cut(s) 10
HpyCH4III ACNGT 1 cut(s) 686
HpyCH4IV ACGT 1 cut(s) 409
HpyCH4V TGCA 3 cut(s) 178, 506, 537
HpyF10VI GCNNNNNNNGC 1 cut(s) 769
HpyF3I CTNAG 2 cut(s) 759, 773
HpySE526I ACGT 1 cut(s) 409
Hsp92I GRCGYC 1 cut(s) 721
Hsp92II CATG 1 cut(s) 617
Ksp22I TGATCA 1 cut(s) 448
Kzo9I GATC 4 cut(s) 123, 448, 602, 644
LpnPI CCDG 6 cut(s) 450, 557, 634, 667, 760, 771
Lsp1109I GCAGC 3 cut(s) 110, 496, 518
LweI GCATC 2 cut(s) 187, 772
MaeI CTAG 4 cut(s) 182, 188, 479, 488
MaeII ACGT 1 cut(s) 409
MalI GATC 4 cut(s) 125, 450, 604, 646
MboI GATC 4 cut(s) 123, 448, 602, 644
MfeI CAATTG 1 cut(s) 102
MhlI GDGCHC 2 cut(s) 702, 774
MluCI AATT 4 cut(s) 40, 102, 257, 417
MlyI GAGTC 2 cut(s) 338, 637
MnlI CCTC 4 cut(s) 54, 112, 259, 590
MroXI GAANNNNTTC 1 cut(s) 41
MseI TTAA 1 cut(s) 467
MslI CAYNNNNRTG 2 cut(s) 380, 684
MspA1I CMGCKG 1 cut(s) 509
MunI CAATTG 1 cut(s) 102
MwoI GCNNNNNNNGC 1 cut(s) 769
NdeI CATATG 1 cut(s) 445
NdeII GATC 4 cut(s) 123, 448, 602, 644
NlaIII CATG 1 cut(s) 617
NlaIV GGNNCC 1 cut(s) 619
PdmI GAANNNNTTC 1 cut(s) 41
PfeI GAWTC 1 cut(s) 440
PkrI GCNGC 3 cut(s) 100, 508, 511
PleI GAGTC 2 cut(s) 337, 636
PpsI GAGTC 2 cut(s) 337, 636
PpuMI RGGWCCY 1 cut(s) 755
Psp124BI GAGCTC 1 cut(s) 774
Psp5II RGGWCCY 1 cut(s) 755
PspN4I GGNNCC 1 cut(s) 619
PspPI GGNCC 2 cut(s) 617, 755
PspPPI RGGWCCY 1 cut(s) 755
PvuII CAGCTG 1 cut(s) 509
RsaI GTAC 3 cut(s) 14, 263, 661
RsaNI GTAC 3 cut(s) 13, 262, 660
RseI CAYNNNNRTG 2 cut(s) 380, 684
SacI GAGCTC 1 cut(s) 774
SalI GTCGAC 1 cut(s) 331
SaqAI TTAA 1 cut(s) 467
SatI GCNGC 3 cut(s) 99, 507, 510
Sau3AI GATC 4 cut(s) 123, 448, 602, 644
Sau96I GGNCC 2 cut(s) 617, 755
SchI GAGTC 2 cut(s) 338, 637
SduI GDGCHC 2 cut(s) 702, 774
SetI ASST 9 cut(s) 309, 362, 375, 412, 439, 511, 583, 757, 774
SfaNI GCATC 2 cut(s) 187, 772
SinI GGWCC 1 cut(s) 755
SmiMI CAYNNNNRTG 2 cut(s) 380, 684
SmlI CTYRAG 3 cut(s) 76, 116, 725
SmoI CTYRAG 3 cut(s) 76, 116, 725
SpeI ACTAGT 1 cut(s) 487
Sse9I AATT 4 cut(s) 40, 102, 257, 417
SsiI CCGC 2 cut(s) 215, 512
SspMI CTAG 4 cut(s) 182, 188, 479, 488
SstI GAGCTC 1 cut(s) 774
TaaI ACNGT 1 cut(s) 686
TaiI ACGT 1 cut(s) 412
TaqI TCGA 2 cut(s) 332, 495
TaqII GACCGA 1 cut(s) 359
TasI AATT 4 cut(s) 40, 102, 257, 417
TfiI GAWTC 1 cut(s) 440
Tru1I TTAA 1 cut(s) 467
Tru9I TTAA 1 cut(s) 467
TscAI CASTG 3 cut(s) 133, 628, 689
TseI GCWGC 3 cut(s) 98, 506, 509
TspDTI ATGAA 3 cut(s) 210, 432, 750
TspGWI ACGGA 3 cut(s) 167, 334, 623
TspRI CASTG 3 cut(s) 133, 628, 689
VpaK11BI GGWCC 1 cut(s) 755
XapI RAATTY 1 cut(s) 417
XbaI TCTAGA 1 cut(s) 478
XmiI GTMKAC 2 cut(s) 332, 433
XmnI GAANNNNTTC 1 cut(s) 41
XspI CTAG 4 cut(s) 182, 188, 479, 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.