FvH4_4g11771

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000278
Physical Location & Seq
Reverse (-)
15498885 .. 15499620
736 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g11771.t1

Sequence Viewer

Length: 426 bp
ATGGATGTCTTCTGTCAACAAGGATTTGATATAGCTCTTGATGAAGACAAACTAGCAAATATGAGTGAGGCCCAATGGAAGGAGATTAATAAGTGGAAGGATGTGAAATTCTTTATCATGAGGGAGACTTTGGCAAAGGAGTTGTGGAAGAAACTGGAAGACCGGTACATGATAAAGAATGTTGAAACCCCATACCAGTCTCCACCGGAGCTCAAGATTGGGATCTCGTTTGGTGGAGCTCAAGTTGCAATCTCGTTTGGATTGGGATCTCAAGATTTAGCTGGTTGTGACCAAGTGGTTAAAATGGGGGAAATATCAACATTATTAGACCCTATGGGATATGTGGAGCCCTTCGGCCGCTTCCGCATCAGAACGATGATGGTGATGATGAATGATGATGGTCATGATGAGAGCATGGATCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

16.2

Weight (kDa)

4.73

Isoelectric Point (pI)

38.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 358, 364
AclWI GGATC 2 cut(s) 230, 274
AcoI YGGCCR 1 cut(s) 355
AcsI RAATTY 1 cut(s) 107
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 79
AgeI ACCGGT 1 cut(s) 162
AgsI TTSAA 1 cut(s) 185
AluBI AGCT 4 cut(s) 35, 211, 239, 281
AluI AGCT 4 cut(s) 35, 211, 239, 281
Alw21I GWGCWC 2 cut(s) 213, 241
Alw26I GTCTC 2 cut(s) 119, 204
AlwI GGATC 2 cut(s) 230, 274
AoxI GGCC 2 cut(s) 69, 355
ApoI RAATTY 1 cut(s) 107
AseI ATTAAT 1 cut(s) 87
AsiGI ACCGGT 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 70
AsuHPI GGTGA 1 cut(s) 394
BanII GRGCYC 3 cut(s) 213, 241, 351
BbsI GAAGAC 2 cut(s) 51, 165
Bbv12I GWGCWC 2 cut(s) 213, 241
BccI CCATC 2 cut(s) 373, 392
BcoDI GTCTC 2 cut(s) 119, 204
BfaI CTAG 1 cut(s) 53
BisI GCNGC 1 cut(s) 358
BlsI GCNGC 1 cut(s) 359
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 1 cut(s) 348
BmsI GCATC 1 cut(s) 375
BpiI GAAGAC 2 cut(s) 51, 165
BpuEI CTTGAG 3 cut(s) 197, 225, 255
BsaBI GATNNNNATC 2 cut(s) 221, 265
BsaWI WCCGGW 2 cut(s) 162, 205
BsaXI ACNNNNNCTCC 2 cut(s) 228, 258
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse118I RCCGGY 1 cut(s) 162
Bse1I ACTGG 2 cut(s) 159, 196
Bse8I GATNNNNATC 2 cut(s) 221, 265
BseGI GGATG 2 cut(s) 10, 106
BseJI GATNNNNATC 2 cut(s) 221, 265
BseLI CCNNNNNNNGG 1 cut(s) 79
BseNI ACTGG 2 cut(s) 159, 196
BseX3I CGGCCG 1 cut(s) 355
Bsh1285I CGRYCG 1 cut(s) 358
BshFI GGCC 2 cut(s) 71, 357
BshTI ACCGGT 1 cut(s) 162
BsiEI CGRYCG 1 cut(s) 358
BsiHKAI GWGCWC 2 cut(s) 213, 241
BsiSI CCGG 2 cut(s) 163, 206
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 2 cut(s) 119, 204
BsnI GGCC 2 cut(s) 71, 357
Bsp1286I GDGCHC 3 cut(s) 213, 241, 351
Bsp143I GATC 3 cut(s) 222, 266, 418
BspACI CCGC 2 cut(s) 358, 364
BspANI GGCC 2 cut(s) 71, 357
BspHI TCATGA 2 cut(s) 117, 403
BspLI GGNNCC 1 cut(s) 348
BspPI GGATC 2 cut(s) 230, 274
BsrFI RCCGGY 1 cut(s) 162
BsrI ACTGG 2 cut(s) 159, 196
BssAI RCCGGY 1 cut(s) 162
BssMI GATC 3 cut(s) 222, 266, 418
BstF5I GGATG 2 cut(s) 10, 106
BstKTI GATC 3 cut(s) 225, 269, 421
BstMAI GTCTC 2 cut(s) 119, 204
BstMBI GATC 3 cut(s) 222, 266, 418
BstMCI CGRYCG 1 cut(s) 358
BstMWI GCNNNNNNNGC 2 cut(s) 245, 363
BstV2I GAAGAC 2 cut(s) 51, 165
BstX2I RGATCY 2 cut(s) 222, 266
BstYI RGATCY 2 cut(s) 222, 266
BstZI CGGCCG 1 cut(s) 355
BsuRI GGCC 2 cut(s) 71, 357
BtsCI GGATG 2 cut(s) 10, 106
CciI TCATGA 2 cut(s) 117, 403
Cfr10I RCCGGY 1 cut(s) 162
Cfr13I GGNCC 1 cut(s) 70
Csp6I GTAC 1 cut(s) 166
CspAI ACCGGT 1 cut(s) 162
CviAII CATG 4 cut(s) 118, 169, 404, 415
CviJI RGCY 7 cut(s) 35, 71, 211, 239, 281, 349, 357
CviKI_1 RGCY 7 cut(s) 35, 71, 211, 239, 281, 349, 357
CviQI GTAC 1 cut(s) 166
DpnI GATC 3 cut(s) 224, 268, 420
DpnII GATC 3 cut(s) 222, 266, 418
EaeI YGGCCR 1 cut(s) 355
EagI CGGCCG 1 cut(s) 355
Ecl136II GAGCTC 2 cut(s) 211, 239
EclXI CGGCCG 1 cut(s) 355
Eco24I GRGCYC 3 cut(s) 213, 241, 351
Eco52I CGGCCG 1 cut(s) 355
Eco53kI GAGCTC 2 cut(s) 211, 239
EcoICRI GAGCTC 2 cut(s) 211, 239
EcoT38I GRGCYC 3 cut(s) 213, 241, 351
FaeI CATG 4 cut(s) 121, 172, 407, 418
FaiI YATR 9 cut(s) 32, 62, 119, 170, 193, 335, 342, 405, 416
FatI CATG 4 cut(s) 117, 168, 403, 414
Fnu4HI GCNGC 1 cut(s) 358
FokI GGATG 2 cut(s) 17, 113
FriOI GRGCYC 3 cut(s) 213, 241, 351
Fsp4HI GCNGC 1 cut(s) 358
FspBI CTAG 1 cut(s) 53
GluI GCNGC 1 cut(s) 358
HaeIII GGCC 2 cut(s) 71, 357
HapII CCGG 2 cut(s) 163, 206
Hin1II CATG 4 cut(s) 121, 172, 407, 418
HincII GTYRAC 1 cut(s) 17
HindII GTYRAC 1 cut(s) 17
HpaII CCGG 2 cut(s) 163, 206
HphI GGTGA 1 cut(s) 394
Hpy166II GTNNAC 1 cut(s) 17
Hpy188I TCNGA 1 cut(s) 371
Hpy188III TCNNGA 5 cut(s) 38, 118, 214, 272, 404
Hpy8I GTNNAC 1 cut(s) 17
HpyAV CCTTC 3 cut(s) 73, 91, 361
HpyCH4V TGCA 1 cut(s) 248
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 363
Hsp92II CATG 4 cut(s) 121, 172, 407, 418
Kzo9I GATC 3 cut(s) 222, 266, 418
LmnI GCTCC 3 cut(s) 208, 236, 346
LpnPI CCDG 5 cut(s) 140, 176, 209, 219, 267
LweI GCATC 1 cut(s) 375
MaeI CTAG 1 cut(s) 53
MaeIII GTNAC 1 cut(s) 287
MalI GATC 3 cut(s) 224, 268, 420
MboI GATC 3 cut(s) 222, 266, 418
MboII GAAGA 3 cut(s) 56, 160, 170
MflI RGATCY 2 cut(s) 222, 266
MhlI GDGCHC 3 cut(s) 213, 241, 351
MluCI AATT 1 cut(s) 107
MnlI CCTC 2 cut(s) 61, 114
MseI TTAA 2 cut(s) 87, 300
MspI CCGG 2 cut(s) 163, 206
MwoI GCNNNNNNNGC 2 cut(s) 245, 363
NdeII GATC 3 cut(s) 222, 266, 418
NlaIII CATG 4 cut(s) 121, 172, 407, 418
NlaIV GGNNCC 1 cut(s) 348
NmuCI GTSAC 1 cut(s) 287
PagI TCATGA 2 cut(s) 117, 403
PinAI ACCGGT 1 cut(s) 162
PkrI GCNGC 1 cut(s) 359
PshBI ATTAAT 1 cut(s) 87
Psp124BI GAGCTC 2 cut(s) 213, 241
PspN4I GGNNCC 1 cut(s) 348
PspPI GGNCC 1 cut(s) 70
PsuI RGATCY 2 cut(s) 222, 266
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
SacI GAGCTC 2 cut(s) 213, 241
SaqAI TTAA 2 cut(s) 87, 300
SatI GCNGC 1 cut(s) 358
Sau3AI GATC 3 cut(s) 222, 266, 418
Sau96I GGNCC 1 cut(s) 70
SduI GDGCHC 3 cut(s) 213, 241, 351
SetI ASST 4 cut(s) 37, 213, 241, 283
SfaNI GCATC 1 cut(s) 375
SmlI CTYRAG 3 cut(s) 212, 240, 270
SmoI CTYRAG 3 cut(s) 212, 240, 270
Sse9I AATT 1 cut(s) 107
SsiI CCGC 2 cut(s) 358, 364
SspMI CTAG 1 cut(s) 53
SstI GAGCTC 2 cut(s) 213, 241
TasI AATT 1 cut(s) 107
TauI GCSGC 1 cut(s) 360
Tru1I TTAA 2 cut(s) 87, 300
Tru9I TTAA 2 cut(s) 87, 300
TseFI GTSAC 1 cut(s) 287
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 2 cut(s) 57, 404
VspI ATTAAT 1 cut(s) 87
XapI RAATTY 1 cut(s) 107
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.