FvH4_6g23760

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000278
Physical Location & Seq
Reverse (-)
17862496 .. 17863574
1079 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g23760.t1

Sequence Viewer

Length: 780 bp
ATGGGGATTGGAACAGTTCGAATTAAGATGCATGATAGAATTATCAAGACTTTGGAAAATGTTATACGTGTTCCAGATATGAAGAATAATTTGATATCTTTGGGTACTCTTGACTCACAAGGCTATAAGTTTTCGTCTCAAGGTGGAGTTCTAAGAGTTAGTAAGGGTGCTCTTGTAGTGATTCAGGGAAAGTTGATTTGCCATAATCTCTACACACTTCAGGGTAACACAGTTGTTGGTGCCCCATCGGTCTCTTCATCGAGTCCATATTTAGATATTGTTACAAGTGTATTTGCTGAGGGCCAGTTTGATCGGTTCTATGAAGATTGCATAGTGAGACACCGCACTATTTTGAAGACACCACGTATAAAAATTACAGAACATATTTGTGGATCCCTCTTAGAGAAAGTATTTTGCATGCTTTCTAATTTGGATAAGTCTAAGGAGTTTGGTGCTGAATCTGTTAATTCCTACTACTTGGTTAATTGGTCTTCATCGTTTGCATTTTATTTCAAGACTCCAATTAATGTATGGTTTGGTACTCATGCTGATTATTCTGATATTAGTTGTCCGTTTGGTGCTCATCCTAGTCAAGAGGTACTTGTTTTTGTTGGTGATATTGAAGAGAAGCAACTTTGGTTGTACAACGTTGCTTTGCATGAAGAAATTCAATCTCTTCGTCAGAGTCATCTACTTTTGATCAAGACAGTTCTTGTTTACCCTTTGGGGTTTGATGGAGGAGAGCTTGGGAGAAGATTCTACTTTGGAGATTTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

260

Amino Acids

29.18

Weight (kDa)

6.71

Isoelectric Point (pI)

47.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pol_BBD PF22936 1 - 42 2.4e-09 Pol polyprotein, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 239
AciI CCGC 1 cut(s) 343
AclI AACGTT 1 cut(s) 648
AclWI GGATC 2 cut(s) 387, 400
AcsI RAATTY 1 cut(s) 666
AcuI CTGAAG 1 cut(s) 203
AfaI GTAC 4 cut(s) 106, 541, 600, 644
AflIII ACRYGT 1 cut(s) 67
AgsI TTSAA 4 cut(s) 355, 514, 623, 671
AluBI AGCT 1 cut(s) 745
AluI AGCT 1 cut(s) 745
Alw21I GWGCWC 2 cut(s) 172, 583
Alw26I GTCTC 3 cut(s) 141, 256, 331
AlwI GGATC 2 cut(s) 387, 400
AoxI GGCC 1 cut(s) 301
ApoI RAATTY 1 cut(s) 666
AseI ATTAAT 1 cut(s) 525
Asp700I GAANNNNTTC 1 cut(s) 666
AspS9I GGNCC 1 cut(s) 301
AsuHPI GGTGA 1 cut(s) 626
AsuII TTCGAA 1 cut(s) 19
BaeGI GKGCMC 1 cut(s) 244
BamHI GGATCC 1 cut(s) 392
BanI GGYRCC 1 cut(s) 239
BbsI GAAGAC 2 cut(s) 362, 483
Bbv12I GWGCWC 2 cut(s) 172, 583
BbvCI CCTCAGC 1 cut(s) 297
BccI CCATC 2 cut(s) 253, 728
BclI TGATCA 1 cut(s) 699
BcoDI GTCTC 3 cut(s) 141, 256, 331
BfaI CTAG 1 cut(s) 588
BmgT120I GGNCC 1 cut(s) 301
BmiI GGNNCC 2 cut(s) 241, 394
BmsI GCATC 1 cut(s) 18
BpiI GAAGAC 2 cut(s) 362, 483
Bpu10I CCTNAGC 1 cut(s) 297
Bpu14I TTCGAA 1 cut(s) 19
BpuEI CTTGAG 1 cut(s) 123
BsaAI YACGTR 2 cut(s) 68, 365
BsaI GGTCTC 1 cut(s) 256
Bse1I ACTGG 1 cut(s) 304
BseGI GGATG 1 cut(s) 583
BseMII CTCAG 1 cut(s) 288
BseNI ACTGG 1 cut(s) 304
BseRI GAGGAG 1 cut(s) 753
BseSI GKGCMC 1 cut(s) 244
BshFI GGCC 1 cut(s) 303
BshNI GGYRCC 1 cut(s) 239
BsiHKAI GWGCWC 2 cut(s) 172, 583
BsmAI GTCTC 3 cut(s) 141, 256, 331
BsmBI CGTCTC 1 cut(s) 141
BsnI GGCC 1 cut(s) 303
Bso31I GGTCTC 1 cut(s) 256
Bsp119I TTCGAA 1 cut(s) 19
Bsp1286I GDGCHC 3 cut(s) 172, 244, 583
Bsp1407I TGTACA 1 cut(s) 642
Bsp143I GATC 3 cut(s) 310, 392, 699
BspACI CCGC 1 cut(s) 343
BspANI GGCC 1 cut(s) 303
BspCNI CTCAG 1 cut(s) 289
BspLI GGNNCC 2 cut(s) 241, 394
BspPI GGATC 2 cut(s) 387, 400
BspT104I TTCGAA 1 cut(s) 19
BspT107I GGYRCC 1 cut(s) 239
BspTNI GGTCTC 1 cut(s) 256
BsrGI TGTACA 1 cut(s) 642
BsrI ACTGG 1 cut(s) 304
BssMI GATC 3 cut(s) 310, 392, 699
Bst4CI ACNGT 3 cut(s) 16, 232, 709
Bst6I CTCTTC 3 cut(s) 259, 618, 681
BstAUI TGTACA 1 cut(s) 642
BstBAI YACGTR 2 cut(s) 68, 365
BstBI TTCGAA 1 cut(s) 19
BstC8I GCNNGC 1 cut(s) 419
BstDEI CTNAG 4 cut(s) 152, 297, 400, 441
BstF5I GGATG 1 cut(s) 583
BstKTI GATC 3 cut(s) 313, 395, 702
BstMAI GTCTC 3 cut(s) 141, 256, 331
BstMBI GATC 3 cut(s) 310, 392, 699
BstNSI RCATGY 1 cut(s) 421
BstSLI GKGCMC 1 cut(s) 244
BstV2I GAAGAC 2 cut(s) 362, 483
BstX2I RGATCY 1 cut(s) 392
BstYI RGATCY 1 cut(s) 392
BsuRI GGCC 1 cut(s) 303
BtsCI GGATG 1 cut(s) 583
Cac8I GCNNGC 1 cut(s) 419
Cfr13I GGNCC 1 cut(s) 301
Csp6I GTAC 4 cut(s) 105, 540, 599, 643
CviAII CATG 4 cut(s) 32, 418, 545, 659
CviJI RGCY 3 cut(s) 123, 303, 745
CviKI_1 RGCY 3 cut(s) 123, 303, 745
CviQI GTAC 4 cut(s) 105, 540, 599, 643
DdeI CTNAG 4 cut(s) 152, 297, 400, 441
DpnI GATC 3 cut(s) 312, 394, 701
DpnII GATC 3 cut(s) 310, 392, 699
Eam1104I CTCTTC 3 cut(s) 259, 618, 681
EarI CTCTTC 3 cut(s) 259, 618, 681
Eco31I GGTCTC 1 cut(s) 256
Eco32I GATATC 1 cut(s) 96
Eco57I CTGAAG 1 cut(s) 203
EcoRV GATATC 1 cut(s) 96
EcoT22I ATGCAT 1 cut(s) 33
Esp3I CGTCTC 1 cut(s) 141
FaeI CATG 4 cut(s) 35, 421, 548, 662
FalI AAGNNNNNCTT 2 cut(s) 585, 617
FatI CATG 4 cut(s) 31, 417, 544, 658
FbaI TGATCA 1 cut(s) 699
FokI GGATG 1 cut(s) 570
FspBI CTAG 1 cut(s) 588
HaeIII GGCC 1 cut(s) 303
Hin1II CATG 4 cut(s) 35, 421, 548, 662
HinfI GANTC 7 cut(s) 113, 181, 262, 458, 517, 685, 756
HphI GGTGA 1 cut(s) 626
Hpy166II GTNNAC 1 cut(s) 718
Hpy188I TCNGA 2 cut(s) 559, 684
Hpy188III TCNNGA 6 cut(s) 46, 74, 110, 514, 593, 703
Hpy8I GTNNAC 1 cut(s) 718
HpyCH4III ACNGT 3 cut(s) 16, 232, 709
HpyCH4IV ACGT 3 cut(s) 67, 364, 648
HpyCH4V TGCA 5 cut(s) 31, 330, 417, 503, 658
HpyF3I CTNAG 4 cut(s) 152, 297, 400, 441
HpySE526I ACGT 3 cut(s) 67, 364, 648
Hsp92II CATG 4 cut(s) 35, 421, 548, 662
Ksp22I TGATCA 1 cut(s) 699
Kzo9I GATC 3 cut(s) 310, 392, 699
LpnPI CCDG 4 cut(s) 87, 170, 206, 317
LweI GCATC 1 cut(s) 18
MaeI CTAG 1 cut(s) 588
MaeII ACGT 3 cut(s) 67, 364, 648
MaeIII GTNAC 2 cut(s) 224, 280
MalI GATC 3 cut(s) 312, 394, 701
MboI GATC 3 cut(s) 310, 392, 699
MboII GAAGA 9 cut(s) 94, 246, 335, 367, 483, 635, 668, 674, 765
MflI RGATCY 1 cut(s) 392
MhlI GDGCHC 3 cut(s) 172, 244, 583
MluCI AATT 9 cut(s) 21, 39, 88, 372, 427, 466, 484, 522, 666
MlyI GAGTC 4 cut(s) 107, 271, 511, 694
MnlI CCTC 4 cut(s) 292, 407, 589, 731
Mph1103I ATGCAT 1 cut(s) 33
MroXI GAANNNNTTC 1 cut(s) 666
MseI TTAA 5 cut(s) 24, 465, 483, 525, 778
MslI CAYNNNNRTG 1 cut(s) 387
NdeII GATC 3 cut(s) 310, 392, 699
NlaIII CATG 4 cut(s) 35, 421, 548, 662
NlaIV GGNNCC 2 cut(s) 241, 394
NsiI ATGCAT 1 cut(s) 33
NspI RCATGY 1 cut(s) 421
NspV TTCGAA 1 cut(s) 19
PaeI GCATGC 1 cut(s) 421
PdmI GAANNNNTTC 1 cut(s) 666
PfeI GAWTC 3 cut(s) 181, 458, 756
PleI GAGTC 4 cut(s) 107, 270, 511, 693
PpsI GAGTC 4 cut(s) 107, 270, 511, 693
Ppu21I YACGTR 2 cut(s) 68, 365
PshBI ATTAAT 1 cut(s) 525
Psp1406I AACGTT 1 cut(s) 648
PspN4I GGNNCC 2 cut(s) 241, 394
PspPI GGNCC 1 cut(s) 301
PsuI RGATCY 1 cut(s) 392
RsaI GTAC 4 cut(s) 106, 541, 600, 644
RsaNI GTAC 4 cut(s) 105, 540, 599, 643
RseI CAYNNNNRTG 1 cut(s) 387
SaqAI TTAA 5 cut(s) 24, 465, 483, 525, 778
Sau3AI GATC 3 cut(s) 310, 392, 699
Sau96I GGNCC 1 cut(s) 301
SchI GAGTC 4 cut(s) 107, 271, 511, 694
SduI GDGCHC 3 cut(s) 172, 244, 583
SetI ASST 6 cut(s) 70, 145, 367, 600, 651, 747
SfaNI GCATC 1 cut(s) 18
SfuI TTCGAA 1 cut(s) 19
SmiMI CAYNNNNRTG 1 cut(s) 387
SmlI CTYRAG 1 cut(s) 138
SmoI CTYRAG 1 cut(s) 138
SphI GCATGC 1 cut(s) 421
Sse9I AATT 9 cut(s) 21, 39, 88, 372, 427, 466, 484, 522, 666
SsiI CCGC 1 cut(s) 343
SspMI CTAG 1 cut(s) 588
TaaI ACNGT 3 cut(s) 16, 232, 709
TaiI ACGT 3 cut(s) 70, 367, 651
TaqI TCGA 2 cut(s) 19, 260
TaqII GACCGA 1 cut(s) 238
TasI AATT 9 cut(s) 21, 39, 88, 372, 427, 466, 484, 522, 666
TatI WGTACW 1 cut(s) 642
TfiI GAWTC 3 cut(s) 181, 458, 756
Tru1I TTAA 5 cut(s) 24, 465, 483, 525, 778
Tru9I TTAA 5 cut(s) 24, 465, 483, 525, 778
TspDTI ATGAA 5 cut(s) 95, 246, 336, 483, 675
TspGWI ACGGA 1 cut(s) 561
VspI ATTAAT 1 cut(s) 525
XapI RAATTY 1 cut(s) 666
XceI RCATGY 1 cut(s) 421
XcmI CCANNNNNNNNNTGG 1 cut(s) 528
XmnI GAANNNNTTC 1 cut(s) 666
XspI CTAG 1 cut(s) 588
Zsp2I ATGCAT 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.