FvH4_3g20502

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000278
Physical Location & Seq
Reverse (-)
13571399 .. 13576352
4954 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g20502.t1

Sequence Viewer

Length: 2181 bp
ATGGGAAATGATAAGCTGTCCAAGATCGTGGGAAGAGGAGATATTTCCCTTGAAACCAACATAGGCCGCTGCCTGGTTCTCAAGGATGTGAGACATGTTCTAGACATGCGTCTCAATTTGATCTCCACTGGGTTGCTTGATGATGAAGGCTACACAAATGTCTTTGGTGGTGGAAAGTGGAAGCTCAGTTACGGTCCAGAAATTCTAGCTCGAGGGAAGAAGGAGAACACTCTCTACATGACATATGCAAAAGTCTATAGTGGGTATGCAATTACACTCGGAGCAGACTCGCCGGTGGAGCTGTGGCACAAGCGGCTCGGTCATATCAACGAGAACGGACTTACTATTCTAGCCAAAAGAGAGGTACTGTCTGGTGTCAATGTTAAAGATATGCCTCTAAAATCATGTACGTATTGCTTGGCTAGAAAGCAACATCGAGCTTCATTCCATCGTTATCCTGCGCCAAGGAAATCCAATGTTTTGGATGTTGTACATTCTGATGTGTGTGGTCCCATGACCACGAGTACTCACAGAGGTGCAAGATACTTCGTTACTTTCATTGATGATCATTCCAGGAAGGTATGGGCTTATGCAGTGACGACGAAAGATCAAGTGCTGGAAGTATTCAAGCAATTTCATGCCGGAGTTGAACGGGAGACCGGCAGAACCCTGAAATGCATTCGCACCGACAACGGGGGAGAGTACATGGGGGCGTTCAGACACTATTGCAAAAGTAACGAAATCAAGCATGAACGATCTGTTCCAAAGACTCCTCAGCACAACGGAGTGGCCGAGAGGATGAACAGAACTATTGTTGAAAGAATCAGAACAATGTTATCTCATGCCAAGCTGCCTAAGAGCTTTTGGGGTGAAGCTCTGATGACTGCGGTTGATGTGATCAACCTTTCTCCCTCAGCTCCATTGAATGGTGACGTGCCGAACAGGTTTTGGACCGGAAAGGACGTCTCATACAATCATCTAAAGGTCGTGAGGAGGCTCGAGCTGACGAGGCCCCAGATCGACATCAGGCTTAGGCCTAATTTGCTGTGGGATCCTGTCAACAAGAAGATTGTCAGAAGCAAAGATGTTGTCTTCTTCGAAGATCAAAACATTGAAGATACTCAGAAGACTGAGAAGCCTAAGAAACCCAGAGAATATCCAGTCAACTCGGATAAAGATTCTCCGCCAACAAAGCAGGATGGCAGGAGAGAAACCGGAGACTCCGGTGATGCAGCAAATGACCCGATGATCAATGACCCAGTTGGTGACACAACTGATGATGAGGAAGAGGCAACGACCCCACGAAGATCAACCAGGGAACGCAGAACCTCGAGAAGATACCCTCCAGATGAGTTTGTTACTCTCACAGATGGAGGAGAACCAGAGTCTTATGAAGAAGCTCTAACGGATGACCACAAGGGGGAGTGGTTGGAAGCCATGCAAGAAGAGATGCAATCCTTGCATGAGAACCAGACTTATGAGCTGGTGGAGTTACCGAAAGACTTGGGACCTGCAAAGCAGATTCTTGGTATGAGTATCACCCGTGACCGAGAAAGCGGAAAGCTGTGGCTATCACAAGAAAAATATATCGAGAAGGTATTGAAGCGGTTCAATATGGAGAAAGCGAATCCAGTTGCTACTCCACTTGCTAGTCACTTTAAGCTCAGCTCAAAGCAAAGTCCTGCAAGTGAGAAAGAAGAGGTAGAAATGGCAACCGTGCCATATGCCTCAGCGGTAGGAAGCCTAATGTATGCAATGGTGTGTACAAGACCAGACATAACACACGCGGTTGGTGTTGTTAGCAGATATCTGTCAAATCCAGGCAAAGAGCATTGGAATGCTGTGAAGTGGATTCTCAAATATCTCAAAGGTACTTCCAAAGTGGGTTTATGTTTTGGAAGCGGGGAGCCTGAACTGATTGGCTACACAGATGCAGATATGGCCGGAGATGTTGACTCGAGAAAGTCTACATCTGGATACCTGATTACATTTTCAGGGGGAGCTGTTTCATGGAAATCAAAGCTACAAAAATGTGTTGCTTTGTCAACTACAGAAGCTGAGTTCATAGCAGCTACAGAAGCCTGCAAAAAAATTTTGTGGATGAAGAAATTCCTACAGGAATTGGGCCATAAACAACAAAAGTATGTTCTGCATTGTGATAGTCAAAGTGCAATGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve zf-CCHC

Protein Analysis

727

Amino Acids

81.98

Weight (kDa)

8.72

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pol_BBD PF22936 1 - 51 2.2e-09 Pol polyprotein, beta-barrel domain
gag_pre-integrs PF13976 92 - 144 7.3e-12 GAG-pre-integrase domain
rve PF00665 163 - 258 2.2e-11 Integrase core domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 966
Acc36I ACCTGC 1 cut(s) 1519
AccB7I CCANNNNNTGG 1 cut(s) 926
AccI GTMKAC 1 cut(s) 1967
AccII CGCG 1 cut(s) 1787
AciI CCGC 9 cut(s) 67, 313, 887, 1184, 1557, 1606, 1733, 1787, 1902
AclWI GGATC 2 cut(s) 1046, 1059
AcoI YGGCCR 2 cut(s) 789, 1941
AcsI RAATTY 3 cut(s) 201, 2091, 2108
AcyI GRCGYC 1 cut(s) 963
AfaI GTAC 7 cut(s) 366, 409, 492, 526, 704, 1765, 1873
AfiI CCNNNNNNNGG 4 cut(s) 73, 693, 926, 1420
AflIII ACRYGT 1 cut(s) 94
AgsI TTSAA 8 cut(s) 53, 628, 650, 818, 925, 1115, 1603, 1612
AjiI CACGTC 1 cut(s) 934
AjnI CCWGG 4 cut(s) 72, 572, 1313, 1819
AleI CACNNNNGTG 1 cut(s) 534
Alw26I GTCTC 5 cut(s) 85, 116, 650, 970, 1212
AlwI GGATC 2 cut(s) 1046, 1059
AlwNI CAGNNNCTG 1 cut(s) 2057
Ama87I CYCGRG 4 cut(s) 210, 998, 1330, 1957
AoxI GGCC 6 cut(s) 64, 789, 1010, 1034, 1941, 2125
ApeKI GCWGC 4 cut(s) 69, 850, 1232, 2069
ApoI RAATTY 3 cut(s) 201, 2091, 2108
ArsI GACNNNNNNTTYG 2 cut(s) 1074, 1106
Asp700I GAANNNNTTC 2 cut(s) 1607, 2108
AspLEI GCGC 1 cut(s) 463
AspS9I GGNCC 6 cut(s) 194, 509, 951, 1011, 1508, 2125
AsuHPI GGTGA 5 cut(s) 881, 941, 1238, 1277, 1531
AsuII TTCGAA 1 cut(s) 1098
AvaI CYCGRG 4 cut(s) 210, 998, 1330, 1957
AvaII GGWCC 4 cut(s) 194, 509, 951, 1508
BamHI GGATCC 1 cut(s) 1051
BarI GAAGNNNNNNTAC 2 cut(s) 173, 205
BauI CACGAG 1 cut(s) 520
BbsI GAAGAC 2 cut(s) 1084, 1133
BbvCI CCTCAGC 3 cut(s) 774, 913, 1729
BbvI GCAGC 4 cut(s) 56, 837, 1244, 2081
BccI CCATC 3 cut(s) 456, 1193, 1364
BciT130I CCWGG 4 cut(s) 74, 574, 1315, 1821
BciVI GTATCC 1 cut(s) 1970
BclI TGATCA 3 cut(s) 565, 897, 1248
BcoDI GTCTC 5 cut(s) 85, 116, 650, 970, 1212
BfaI CTAG 5 cut(s) 101, 206, 350, 423, 1650
BfmI CTRYAG 4 cut(s) 256, 2049, 2073, 2114
BfuAI ACCTGC 1 cut(s) 1519
BfuI GTATCC 1 cut(s) 1970
BisI GCNGC 6 cut(s) 67, 70, 314, 851, 1233, 2070
BlpI GCTNAGC 1 cut(s) 1664
BlsI GCNGC 6 cut(s) 68, 71, 315, 852, 1234, 2071
BmcAI AGTACT 1 cut(s) 526
Bme1390I CCNGG 4 cut(s) 74, 574, 1315, 1821
Bme18I GGWCC 4 cut(s) 194, 509, 951, 1508
BmeT110I CYCGRG 4 cut(s) 210, 998, 1330, 1957
BmgBI CACGTC 1 cut(s) 934
BmgT120I GGNCC 6 cut(s) 194, 509, 951, 1011, 1508, 2125
BmiI GGNNCC 5 cut(s) 511, 1013, 1053, 1509, 1908
BmrFI CCNGG 4 cut(s) 74, 574, 1315, 1821
BmrI ACTGGG 2 cut(s) 138, 1253
BmsI GCATC 3 cut(s) 1219, 1440, 1921
BmuI ACTGGG 2 cut(s) 138, 1253
BoxI GACNNNNGTC 1 cut(s) 108
BpiI GAAGAC 2 cut(s) 1084, 1133
BpmI CTGGAG 1 cut(s) 1329
Bpu10I CCTNAGC 4 cut(s) 774, 913, 1031, 1729
Bpu1102I GCTNAGC 1 cut(s) 1664
Bpu14I TTCGAA 1 cut(s) 1098
BpuEI CTTGAG 1 cut(s) 65
BsaAI YACGTR 1 cut(s) 411
BsaBI GATNNNNATC 1 cut(s) 1022
BsaHI GRCGYC 1 cut(s) 963
BsaI GGTCTC 1 cut(s) 650
BsaJI CCNNGG 2 cut(s) 464, 1314
BsaWI WCCGGW 3 cut(s) 953, 1214, 1223
Bsc4I CCNNNNNNNGG 4 cut(s) 73, 693, 926, 1420
Bse118I RCCGGY 2 cut(s) 292, 659
Bse1I ACTGG 4 cut(s) 133, 1160, 1259, 1631
Bse3DI GCAATG 2 cut(s) 1761, 2178
Bse8I GATNNNNATC 1 cut(s) 1022
BseBI CCWGG 4 cut(s) 74, 574, 1315, 1821
BseDI CCNNGG 2 cut(s) 464, 1314
BseGI GGATG 6 cut(s) 91, 490, 804, 1204, 1414, 2106
BseJI GATNNNNATC 1 cut(s) 1022
BseLI CCNNNNNNNGG 4 cut(s) 73, 693, 926, 1420
BseMI GCAATG 2 cut(s) 1761, 2178
BseMII CTCAG 8 cut(s) 199, 788, 927, 1122, 1136, 1678, 1743, 2049
BseNI ACTGG 4 cut(s) 133, 1160, 1259, 1631
BseRI GAGGAG 4 cut(s) 51, 762, 1006, 1389
BseXI GCAGC 4 cut(s) 56, 837, 1244, 2081
Bsh1236I CGCG 1 cut(s) 1787
BshFI GGCC 6 cut(s) 66, 791, 1012, 1036, 1943, 2127
BsiHKCI CYCGRG 4 cut(s) 210, 998, 1330, 1957
BsiSI CCGG 7 cut(s) 293, 642, 660, 954, 1215, 1224, 1944
BslFI GGGAC 2 cut(s) 495, 1521
BslI CCNNNNNNNGG 4 cut(s) 73, 693, 926, 1420
BsmAI GTCTC 5 cut(s) 85, 116, 650, 970, 1212
BsmBI CGTCTC 2 cut(s) 116, 970
BsmFI GGGAC 2 cut(s) 495, 1521
BsmI GAATGC 2 cut(s) 678, 1843
BsnI GGCC 6 cut(s) 66, 791, 1012, 1036, 1943, 2127
Bso31I GGTCTC 1 cut(s) 650
BsoBI CYCGRG 4 cut(s) 210, 998, 1330, 1957
Bsp119I TTCGAA 1 cut(s) 1098
Bsp1407I TGTACA 2 cut(s) 490, 1763
Bsp1720I GCTNAGC 1 cut(s) 1664
BspACI CCGC 9 cut(s) 67, 313, 887, 1184, 1557, 1606, 1733, 1787, 1902
BspANI GGCC 6 cut(s) 66, 791, 1012, 1036, 1943, 2127
BspCNI CTCAG 8 cut(s) 198, 787, 926, 1123, 1135, 1677, 1742, 2050
BspFNI CGCG 1 cut(s) 1787
BspLI GGNNCC 5 cut(s) 511, 1013, 1053, 1509, 1908
BspMI ACCTGC 1 cut(s) 1519
BspPI GGATC 2 cut(s) 1046, 1059
BspT104I TTCGAA 1 cut(s) 1098
BspTNI GGTCTC 1 cut(s) 650
BsrDI GCAATG 2 cut(s) 1761, 2178
BsrFI RCCGGY 2 cut(s) 292, 659
BsrGI TGTACA 2 cut(s) 490, 1763
BsrI ACTGG 4 cut(s) 133, 1160, 1259, 1631
BssAI RCCGGY 2 cut(s) 292, 659
BssECI CCNNGG 2 cut(s) 464, 1314
BssNI GRCGYC 1 cut(s) 963
BssSI CACGAG 1 cut(s) 520
BssT1I CCWWGG 1 cut(s) 464
Bst2BI CACGAG 1 cut(s) 520
Bst2UI CCWGG 4 cut(s) 74, 574, 1315, 1821
Bst4CI ACNGT 3 cut(s) 194, 369, 1717
Bst6I CTCTTC 4 cut(s) 28, 1281, 1440, 1692
BstACI GRCGYC 1 cut(s) 963
BstAPI GCANNNNNTGC 1 cut(s) 1459
BstAUI TGTACA 2 cut(s) 490, 1763
BstBAI YACGTR 1 cut(s) 411
BstBI TTCGAA 1 cut(s) 1098
BstC8I GCNNGC 1 cut(s) 2083
BstF5I GGATG 6 cut(s) 91, 490, 804, 1204, 1414, 2106
BstFNI CGCG 1 cut(s) 1787
BstHHI GCGC 1 cut(s) 463
BstMAI GTCTC 5 cut(s) 85, 116, 650, 970, 1212
BstMWI GCNNNNNNNGC 8 cut(s) 298, 313, 1009, 1042, 1192, 1459, 1940, 2078
BstNI CCWGG 4 cut(s) 74, 574, 1315, 1821
BstNSI RCATGY 2 cut(s) 98, 109
BstPAI GACNNNNGTC 1 cut(s) 108
BstSCI CCNGG 4 cut(s) 72, 572, 1313, 1819
BstSFI CTRYAG 4 cut(s) 256, 2049, 2073, 2114
BstSNI TACGTA 1 cut(s) 411
BstUI CGCG 1 cut(s) 1787
BstV1I GCAGC 4 cut(s) 56, 837, 1244, 2081
BstV2I GAAGAC 2 cut(s) 1084, 1133
BstX2I RGATCY 1 cut(s) 1051
BstXI CCANNNNNNTGG 2 cut(s) 28, 481
BstYI RGATCY 1 cut(s) 1051
BsuI GTATCC 1 cut(s) 1970
BsuRI GGCC 6 cut(s) 66, 791, 1012, 1036, 1943, 2127
BtrI CACGTC 1 cut(s) 934
BtsCI GGATG 6 cut(s) 91, 490, 804, 1204, 1414, 2106
BtsI GCAGTG 1 cut(s) 600
BtsIMutI CAGTG 2 cut(s) 126, 600
BveI ACCTGC 1 cut(s) 1519
Cac8I GCNNGC 1 cut(s) 2083
CaiI CAGNNNCTG 1 cut(s) 2057
CfoI GCGC 1 cut(s) 463
Cfr10I RCCGGY 2 cut(s) 292, 659
Cfr13I GGNCC 6 cut(s) 194, 509, 951, 1011, 1508, 2125
CseI GACGC 1 cut(s) 98
Csp6I GTAC 7 cut(s) 365, 408, 491, 525, 703, 1764, 1872
CviQI GTAC 7 cut(s) 365, 408, 491, 525, 703, 1764, 1872
EaeI YGGCCR 2 cut(s) 789, 1941
Eam1104I CTCTTC 4 cut(s) 28, 1281, 1440, 1692
EarI CTCTTC 4 cut(s) 28, 1281, 1440, 1692
EciI GGCGGA 1 cut(s) 1173
Eco105I TACGTA 1 cut(s) 411
Eco130I CCWWGG 1 cut(s) 464
Eco147I AGGCCT 1 cut(s) 1036
Eco31I GGTCTC 1 cut(s) 650
Eco32I GATATC 1 cut(s) 1808
Eco47I GGWCC 4 cut(s) 194, 509, 951, 1508
Eco88I CYCGRG 4 cut(s) 210, 998, 1330, 1957
EcoO109I RGGNCCY 2 cut(s) 1011, 1508
EcoRII CCWGG 4 cut(s) 72, 572, 1313, 1819
EcoRV GATATC 1 cut(s) 1808
EcoT14I CCWWGG 1 cut(s) 464
EcoT22I ATGCAT 1 cut(s) 680
ErhI CCWWGG 1 cut(s) 464
Esp3I CGTCTC 2 cut(s) 116, 970
FaqI GGGAC 2 cut(s) 495, 1521
FauI CCCGC 1 cut(s) 1895
FauNDI CATATG 2 cut(s) 244, 1723
FbaI TGATCA 3 cut(s) 565, 897, 1248
FblI GTMKAC 1 cut(s) 1967
Fnu4HI GCNGC 6 cut(s) 67, 70, 314, 851, 1233, 2070
FokI GGATG 6 cut(s) 98, 497, 811, 1211, 1421, 2113
Fsp4HI GCNGC 6 cut(s) 67, 70, 314, 851, 1233, 2070
FspBI CTAG 5 cut(s) 101, 206, 350, 423, 1650
GlaI GCGC 1 cut(s) 462
GluI GCNGC 6 cut(s) 67, 70, 314, 851, 1233, 2070
GsuI CTGGAG 1 cut(s) 1329
HaeIII GGCC 6 cut(s) 66, 791, 1012, 1036, 1943, 2127
HapII CCGG 7 cut(s) 293, 642, 660, 954, 1215, 1224, 1944
HgaI GACGC 1 cut(s) 98
HhaI GCGC 1 cut(s) 463
Hin1I GRCGYC 1 cut(s) 963
Hin6I GCGC 1 cut(s) 461
HinP1I GCGC 1 cut(s) 461
HincII GTYRAC 4 cut(s) 1060, 1165, 1954, 2046
HindII GTYRAC 4 cut(s) 1060, 1165, 1954, 2046
HpaII CCGG 7 cut(s) 293, 642, 660, 954, 1215, 1224, 1944
HphI GGTGA 5 cut(s) 881, 941, 1238, 1277, 1531
Hpy166II GTNNAC 6 cut(s) 1060, 1165, 1764, 1954, 1968, 2046
Hpy188I TCNGA 8 cut(s) 281, 499, 719, 827, 879, 1076, 1125, 1171
Hpy188III TCNNGA 8 cut(s) 101, 197, 988, 1332, 1346, 1591, 1959, 1974
Hpy8I GTNNAC 6 cut(s) 1060, 1165, 1764, 1954, 1968, 2046
Hpy99I CGWCG 1 cut(s) 604
HpyAV CCTTC 4 cut(s) 140, 214, 571, 1588
HpyCH4III ACNGT 3 cut(s) 194, 369, 1717
HpyCH4IV ACGT 3 cut(s) 410, 933, 963
HpyF10VI GCNNNNNNNGC 8 cut(s) 298, 313, 1009, 1042, 1192, 1459, 1940, 2078
HpySE526I ACGT 3 cut(s) 410, 933, 963
Hsp92I GRCGYC 1 cut(s) 963
HspAI GCGC 1 cut(s) 461
Ksp22I TGATCA 3 cut(s) 565, 897, 1248
LmnI GCTCC 5 cut(s) 281, 298, 922, 1906, 2000
Lsp1109I GCAGC 4 cut(s) 56, 837, 1244, 2081
LweI GCATC 3 cut(s) 1219, 1440, 1921
MaeI CTAG 5 cut(s) 101, 206, 350, 423, 1650
MaeII ACGT 3 cut(s) 410, 933, 963
MflI RGATCY 1 cut(s) 1051
MluCI AATT 8 cut(s) 115, 201, 270, 632, 1039, 2091, 2108, 2120
MlyI GAGTC 5 cut(s) 281, 763, 1214, 1394, 1949
MmeI TCCRAC 1 cut(s) 1410
Mph1103I ATGCAT 1 cut(s) 680
MroXI GAANNNNTTC 2 cut(s) 1607, 2108
MseI TTAA 2 cut(s) 384, 1659
MslI CAYNNNNRTG 3 cut(s) 498, 534, 1836
MspA1I CMGCKG 2 cut(s) 69, 1733
MspI CCGG 7 cut(s) 293, 642, 660, 954, 1215, 1224, 1944
MspR9I CCNGG 4 cut(s) 74, 574, 1315, 1821
Mva1269I GAATGC 2 cut(s) 678, 1843
MvaI CCWGG 4 cut(s) 74, 574, 1315, 1821
MvnI CGCG 1 cut(s) 1787
MwoI GCNNNNNNNGC 8 cut(s) 298, 313, 1009, 1042, 1192, 1459, 1940, 2078
NdeI CATATG 2 cut(s) 244, 1723
NlaIV GGNNCC 5 cut(s) 511, 1013, 1053, 1509, 1908
NmeAIII GCCGAG 1 cut(s) 817
NmuCI GTSAC 5 cut(s) 595, 929, 1265, 1544, 1652
NsiI ATGCAT 1 cut(s) 680
NspI RCATGY 2 cut(s) 98, 109
NspV TTCGAA 1 cut(s) 1098
OliI CACNNNNGTG 1 cut(s) 534
PaeR7I CTCGAG 4 cut(s) 210, 998, 1330, 1957
PceI AGGCCT 1 cut(s) 1036
PciI ACATGT 1 cut(s) 94
PcsI WCGNNNNNNNCGW 1 cut(s) 789
PctI GAATGC 2 cut(s) 678, 1843
PdmI GAANNNNTTC 2 cut(s) 1607, 2108
PfeI GAWTC 5 cut(s) 822, 1178, 1522, 1627, 1852
PflMI CCANNNNNTGG 1 cut(s) 926
PfoI TCCNGGA 1 cut(s) 572
PkrI GCNGC 6 cut(s) 68, 71, 315, 852, 1234, 2071
PleI GAGTC 5 cut(s) 281, 763, 1214, 1393, 1949
PpsI GAGTC 5 cut(s) 281, 763, 1214, 1393, 1949
Ppu21I YACGTR 1 cut(s) 411
PpuMI RGGWCCY 1 cut(s) 1508
PscI ACATGT 1 cut(s) 94
PshAI GACNNNNGTC 1 cut(s) 108
Psp5II RGGWCCY 1 cut(s) 1508
Psp6I CCWGG 4 cut(s) 72, 572, 1313, 1819
PspGI CCWGG 4 cut(s) 72, 572, 1313, 1819
PspN4I GGNNCC 5 cut(s) 511, 1013, 1053, 1509, 1908
PspPI GGNCC 6 cut(s) 194, 509, 951, 1011, 1508, 2125
PspPPI RGGWCCY 1 cut(s) 1508
PspXI VCTCGAGB 2 cut(s) 210, 998
PsrI GAACNNNNNNTAC 2 cut(s) 218, 250
PstNI CAGNNNCTG 1 cut(s) 2057
PsuI RGATCY 1 cut(s) 1051
RsaI GTAC 7 cut(s) 366, 409, 492, 526, 704, 1765, 1873
RsaNI GTAC 7 cut(s) 365, 408, 491, 525, 703, 1764, 1872
RseI CAYNNNNRTG 3 cut(s) 498, 534, 1836
SaqAI TTAA 2 cut(s) 384, 1659
SatI GCNGC 6 cut(s) 67, 70, 314, 851, 1233, 2070
Sau96I GGNCC 6 cut(s) 194, 509, 951, 1011, 1508, 2125
ScaI AGTACT 1 cut(s) 526
SchI GAGTC 5 cut(s) 281, 763, 1214, 1394, 1949
ScrFI CCNGG 4 cut(s) 74, 574, 1315, 1821
SfaNI GCATC 3 cut(s) 1219, 1440, 1921
SfcI CTRYAG 4 cut(s) 256, 2049, 2073, 2114
Sfr274I CTCGAG 4 cut(s) 210, 998, 1330, 1957
SfuI TTCGAA 1 cut(s) 1098
SgrAI CRCCGGYG 1 cut(s) 292
SinI GGWCC 4 cut(s) 194, 509, 951, 1508
SlaI CTCGAG 4 cut(s) 210, 998, 1330, 1957
SmiMI CAYNNNNRTG 3 cut(s) 498, 534, 1836
SmlI CTYRAG 5 cut(s) 80, 210, 998, 1330, 1957
SmoI CTYRAG 5 cut(s) 80, 210, 998, 1330, 1957
SnaBI TACGTA 1 cut(s) 411
Sse9I AATT 8 cut(s) 115, 201, 270, 632, 1039, 2091, 2108, 2120
SseBI AGGCCT 1 cut(s) 1036
SsiI CCGC 9 cut(s) 67, 313, 887, 1184, 1557, 1606, 1733, 1787, 1902
SspMI CTAG 5 cut(s) 101, 206, 350, 423, 1650
StuI AGGCCT 1 cut(s) 1036
StyD4I CCNGG 4 cut(s) 72, 572, 1313, 1819
StyI CCWWGG 1 cut(s) 464
TaaI ACNGT 3 cut(s) 194, 369, 1717
TaiI ACGT 3 cut(s) 413, 936, 966
TaqI TCGA 8 cut(s) 211, 436, 999, 1020, 1098, 1331, 1590, 1958
TaqII GACCGA 2 cut(s) 308, 1563
TasI AATT 8 cut(s) 115, 201, 270, 632, 1039, 2091, 2108, 2120
TatI WGTACW 4 cut(s) 490, 524, 702, 1763
TauI GCSGC 2 cut(s) 69, 316
TfiI GAWTC 5 cut(s) 822, 1178, 1522, 1627, 1852
Tru1I TTAA 2 cut(s) 384, 1659
Tru9I TTAA 2 cut(s) 384, 1659
TscAI CASTG 2 cut(s) 133, 600
TseFI GTSAC 5 cut(s) 595, 929, 1265, 1544, 1652
TseI GCWGC 4 cut(s) 69, 850, 1232, 2069
Tsp45I GTSAC 5 cut(s) 595, 929, 1265, 1544, 1652
TspGWI ACGGA 3 cut(s) 351, 798, 1421
TspRI CASTG 2 cut(s) 133, 600
Van91I CCANNNNNTGG 1 cut(s) 926
VpaK11BI GGWCC 4 cut(s) 194, 509, 951, 1508
XapI RAATTY 3 cut(s) 201, 2091, 2108
XbaI TCTAGA 1 cut(s) 100
XceI RCATGY 2 cut(s) 98, 109
XhoI CTCGAG 4 cut(s) 210, 998, 1330, 1957
XmiI GTMKAC 1 cut(s) 1967
XmnI GAANNNNTTC 2 cut(s) 1607, 2108
XspI CTAG 5 cut(s) 101, 206, 350, 423, 1650
ZraI GACGTC 1 cut(s) 964
ZrmI AGTACT 1 cut(s) 526
Zsp2I ATGCAT 1 cut(s) 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.