FvH4_6g04372

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000278
Physical Location & Seq
Reverse (-)
2372781 .. 2374424
1644 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g04372.t1

Sequence Viewer

Length: 1203 bp
ATGACGGAGACGTCCGTAAAAGGGCTTTGGGAAATGCTTTACCTAGAGAAGTCGCTCACAAATCGGATCAATCTCAAGAAACAATTCTATAGGTTTACCATGGATGAAAGTACAACTTTGCAAGACCATCTTAATGAGTTTAACAGAATGCTCTCGGAACTGTTAAACTTGGAGGTGAATATGAGTGAAGAAGATAAAGTCTCGGTTCTTCTTGCATCACTTCTTGAGAAGTATGATCACTTGGTGACAACGATGTTATACGGGAAGCAGAGTATAGTTCTCGATGAAGTCACATCAACATTTCTCTCTAATGAAAATAGGAGAAAAGTTGTAGATGTTAATTATGAGGACTCTAGAGTATTTTCTGCTAGAGGAAGGAGAGAAAATCGAGATCAAGGTTGGAAGAGCTCTAAGTCCAACTCAGGACATCACAAGGACAAGGAGTGCTACTACTGTCATGAAAAAGGGCACATCGCGTTGCACTGCCCAAAGCTGAAGAAAAAGAAAGATGAAGGAAATGAGAAAAATGAAGATTCTCATCGAAGAGTTTCAGCAAATTTCATTTCAGATTATGGTGATTGTGTTATCATGGCAACCTCTCATTCTGAAGGAAAAGCTTTCAAGGTGGAAGGCATTGGAGCAGTGAAGATCAAGACACATGATGGTTTGGTGAAAATTCTTAGAGATGTCAGATATGTACCCAATTTAAGGTGGAATCTCATATCAGTTGGTGCACTCGACTCCAAAGGTTACAAGATTGTGACAGAAGGTGGAGTTTTGAAGGTCATGATGGGTTCTCATGTGGTGTTGCGTGGAAATAAGAAGTTGAGCAGGCGTGGCTTGCGAGTTAGTGAGAAGAATGGCGATCTTATTTCCCAAAAGTATTGTGAGGGAGCTACACAATCAAGGGGAAAGAAATCCGCATTTAGATGGCAACCAAAATTGCAGCAGTCCTTACAGGGATGCAGACCCATAAGGACAAGTATGACGTTGGCTCGTGGGAATCCTGATGGCAATAAGTTAGCTCATTATGGTGCCATGAAGTTGAGTTCGAGGCGAGCAGTTGGTCATGTTGGTGATGCTATGGAAAGTCAAGAGCGCTCTATCCTCAATTGTGGTGACGAGATGACTTTCATTGATCAACCGGTGGTTCGTGGGTGGTTGGAGAAGGTTGCTTGTGGCGATGTCAAATCATGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

401

Amino Acids

45.36

Weight (kDa)

9.33

Isoelectric Point (pI)

44.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 3 - 109 1.7e-18 gag-polypeptide of LTR copia-type
Pol_BBD PF22936 201 - 251 1.4e-13 Pol polyprotein, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 10
AatII GACGTC 1 cut(s) 14
AccB1I GGYRCC 1 cut(s) 1034
AccII CGCG 1 cut(s) 476
AciI CCGC 1 cut(s) 921
AclWI GGATC 1 cut(s) 74
AcsI RAATTY 2 cut(s) 556, 675
AcuI CTGAAG 2 cut(s) 515, 627
AcyI GRCGYC 1 cut(s) 11
AdeI CACNNNGTG 1 cut(s) 244
AfaI GTAC 2 cut(s) 112, 699
AfeI AGCGCT 1 cut(s) 1100
AfiI CCNNNNNNNGG 2 cut(s) 21, 708
AgeI ACCGGT 1 cut(s) 1144
AgsI TTSAA 2 cut(s) 622, 781
AluBI AGCT 5 cut(s) 408, 493, 617, 896, 1025
AluI AGCT 5 cut(s) 408, 493, 617, 896, 1025
Alw21I GWGCWC 2 cut(s) 410, 736
Alw26I GTCTC 2 cut(s) 2, 205
Alw44I GTGCAC 1 cut(s) 732
AlwI GGATC 1 cut(s) 74
Aor51HI AGCGCT 1 cut(s) 1100
ApaLI GTGCAC 1 cut(s) 732
ApeKI GCWGC 1 cut(s) 946
ApoI RAATTY 2 cut(s) 556, 675
AsiGI ACCGGT 1 cut(s) 1144
Asp700I GAANNNNTTC 2 cut(s) 83, 547
AspLEI GCGC 1 cut(s) 1101
AsuHPI GGTGA 6 cut(s) 187, 256, 587, 682, 1088, 1130
BaeGI GKGCMC 2 cut(s) 471, 736
BanI GGYRCC 1 cut(s) 1034
BanII GRGCYC 1 cut(s) 410
BauI CACGAG 1 cut(s) 996
Bbv12I GWGCWC 2 cut(s) 410, 736
BbvI GCAGC 1 cut(s) 958
BccI CCATC 5 cut(s) 135, 656, 784, 924, 1004
BclI TGATCA 2 cut(s) 235, 1138
BcoDI GTCTC 2 cut(s) 2, 205
BfaI CTAG 3 cut(s) 44, 354, 369
BfmI CTRYAG 1 cut(s) 88
BfoI RGCGCY 1 cut(s) 1102
BisI GCNGC 1 cut(s) 947
BlsI GCNGC 1 cut(s) 948
BmiI GGNNCC 1 cut(s) 1036
BmsI GCATC 3 cut(s) 224, 953, 1069
BpuEI CTTGAG 2 cut(s) 59, 245
BsaBI GATNNNNATC 1 cut(s) 537
BsaHI GRCGYC 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 99
BsaWI WCCGGW 1 cut(s) 1144
Bsc4I CCNNNNNNNGG 2 cut(s) 21, 708
Bse118I RCCGGY 1 cut(s) 1144
Bse8I GATNNNNATC 1 cut(s) 537
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 2 cut(s) 109, 968
BseJI GATNNNNATC 1 cut(s) 537
BseLI CCNNNNNNNGG 2 cut(s) 21, 708
BseMII CTCAG 1 cut(s) 435
BseSI GKGCMC 2 cut(s) 471, 736
BseXI GCAGC 1 cut(s) 958
Bsh1236I CGCG 1 cut(s) 476
BshNI GGYRCC 1 cut(s) 1034
BshTI ACCGGT 1 cut(s) 1144
BsiHKAI GWGCWC 2 cut(s) 410, 736
BsiSI CCGG 1 cut(s) 1145
BslI CCNNNNNNNGG 2 cut(s) 21, 708
BsmAI GTCTC 2 cut(s) 2, 205
BsmBI CGTCTC 1 cut(s) 2
BsmI GAATGC 1 cut(s) 153
Bsp1286I GDGCHC 3 cut(s) 410, 471, 736
Bsp143I GATC 6 cut(s) 66, 235, 391, 648, 865, 1138
Bsp19I CCATGG 1 cut(s) 99
BspACI CCGC 1 cut(s) 921
BspCNI CTCAG 1 cut(s) 434
BspFNI CGCG 1 cut(s) 476
BspHI TCATGA 3 cut(s) 457, 786, 1199
BspLI GGNNCC 1 cut(s) 1036
BspPI GGATC 1 cut(s) 74
BspQI GCTCTTC 1 cut(s) 398
BspT107I GGYRCC 1 cut(s) 1034
BsrFI RCCGGY 1 cut(s) 1144
BssAI RCCGGY 1 cut(s) 1144
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 6 cut(s) 66, 235, 391, 648, 865, 1138
BssNI GRCGYC 1 cut(s) 11
BssSI CACGAG 1 cut(s) 996
BssT1I CCWWGG 1 cut(s) 99
Bst2BI CACGAG 1 cut(s) 996
Bst4CI ACNGT 2 cut(s) 162, 455
Bst6I CTCTTC 2 cut(s) 398, 538
BstACI GRCGYC 1 cut(s) 11
BstC8I GCNNGC 3 cut(s) 833, 842, 1059
BstDEI CTNAG 3 cut(s) 411, 421, 680
BstDSI CCRYGG 1 cut(s) 99
BstF5I GGATG 2 cut(s) 109, 968
BstFNI CGCG 1 cut(s) 476
BstH2I RGCGCY 1 cut(s) 1102
BstHHI GCGC 1 cut(s) 1101
BstKTI GATC 6 cut(s) 69, 238, 394, 651, 868, 1141
BstMAI GTCTC 2 cut(s) 2, 205
BstMBI GATC 6 cut(s) 66, 235, 391, 648, 865, 1138
BstMWI GCNNNNNNNGC 2 cut(s) 837, 841
BstSFI CTRYAG 1 cut(s) 88
BstSLI GKGCMC 2 cut(s) 471, 736
BstUI CGCG 1 cut(s) 476
BstV1I GCAGC 1 cut(s) 958
BtgI CCRYGG 1 cut(s) 99
BtgZI GCGATG 2 cut(s) 457, 1197
BtsCI GGATG 2 cut(s) 109, 968
BtsI GCAGTG 2 cut(s) 481, 648
BtsIMutI CAGTG 2 cut(s) 481, 648
Cac8I GCNNGC 3 cut(s) 833, 842, 1059
CciI TCATGA 3 cut(s) 457, 786, 1199
CfoI GCGC 1 cut(s) 1101
Cfr10I RCCGGY 1 cut(s) 1144
Csp6I GTAC 2 cut(s) 111, 698
CspAI ACCGGT 1 cut(s) 1144
CviJI RGCY 8 cut(s) 25, 408, 493, 617, 840, 896, 995, 1025
CviKI_1 RGCY 8 cut(s) 25, 408, 493, 617, 840, 896, 995, 1025
CviQI GTAC 2 cut(s) 111, 698
DdeI CTNAG 3 cut(s) 411, 421, 680
DpnI GATC 6 cut(s) 68, 237, 393, 650, 867, 1140
DpnII GATC 6 cut(s) 66, 235, 391, 648, 865, 1138
DraIII CACNNNGTG 1 cut(s) 244
DrdI GACNNNNNNGTC 1 cut(s) 10
DseDI GACNNNNNNGTC 1 cut(s) 10
Eam1104I CTCTTC 2 cut(s) 398, 538
EarI CTCTTC 2 cut(s) 398, 538
Ecl136II GAGCTC 1 cut(s) 408
Eco130I CCWWGG 1 cut(s) 99
Eco24I GRGCYC 1 cut(s) 410
Eco47III AGCGCT 1 cut(s) 1100
Eco53kI GAGCTC 1 cut(s) 408
Eco57I CTGAAG 2 cut(s) 515, 627
EcoICRI GAGCTC 1 cut(s) 408
EcoT14I CCWWGG 1 cut(s) 99
EcoT38I GRGCYC 1 cut(s) 410
ErhI CCWWGG 1 cut(s) 99
Esp3I CGTCTC 1 cut(s) 2
FalI AAGNNNNNCTT 4 cut(s) 100, 132, 114, 146
FbaI TGATCA 2 cut(s) 235, 1138
Fnu4HI GCNGC 1 cut(s) 947
FokI GGATG 2 cut(s) 116, 975
FriOI GRGCYC 1 cut(s) 410
Fsp4HI GCNGC 1 cut(s) 947
FspBI CTAG 3 cut(s) 44, 354, 369
GlaI GCGC 1 cut(s) 1100
GluI GCNGC 1 cut(s) 947
HaeII RGCGCY 1 cut(s) 1102
HapII CCGG 1 cut(s) 1145
HhaI GCGC 1 cut(s) 1101
Hin1I GRCGYC 1 cut(s) 11
Hin6I GCGC 1 cut(s) 1099
HinP1I GCGC 1 cut(s) 1099
HindIII AAGCTT 1 cut(s) 615
HinfI GANTC 5 cut(s) 350, 533, 715, 740, 1003
HpaII CCGG 1 cut(s) 1145
HphI GGTGA 6 cut(s) 187, 256, 587, 682, 1088, 1130
Hpy166II GTNNAC 2 cut(s) 96, 734
Hpy188I TCNGA 5 cut(s) 66, 157, 568, 607, 692
Hpy8I GTNNAC 2 cut(s) 96, 734
HpyAV CCTTC 7 cut(s) 369, 506, 602, 623, 761, 775, 1162
HpyCH4III ACNGT 2 cut(s) 162, 455
HpyCH4IV ACGT 2 cut(s) 11, 989
HpyCH4V TGCA 6 cut(s) 121, 215, 481, 734, 946, 966
HpyF10VI GCNNNNNNNGC 2 cut(s) 837, 841
HpyF3I CTNAG 3 cut(s) 411, 421, 680
HpySE526I ACGT 2 cut(s) 11, 989
Hsp92I GRCGYC 1 cut(s) 11
HspAI GCGC 1 cut(s) 1099
Ksp22I TGATCA 2 cut(s) 235, 1138
Kzo9I GATC 6 cut(s) 66, 235, 391, 648, 865, 1138
LguI GCTCTTC 1 cut(s) 398
LmnI GCTCC 2 cut(s) 638, 893
LpnPI CCDG 5 cut(s) 408, 817, 944, 1020, 1158
Lsp1109I GCAGC 1 cut(s) 958
LweI GCATC 3 cut(s) 224, 953, 1069
MaeI CTAG 3 cut(s) 44, 354, 369
MaeII ACGT 2 cut(s) 11, 989
MaeIII GTNAC 5 cut(s) 244, 289, 749, 760, 1118
MalI GATC 6 cut(s) 68, 237, 393, 650, 867, 1140
MboI GATC 6 cut(s) 66, 235, 391, 648, 865, 1138
MboII GAAGA 9 cut(s) 200, 200, 203, 415, 508, 542, 555, 658, 868
MfeI CAATTG 1 cut(s) 1111
MhlI GDGCHC 3 cut(s) 410, 471, 736
MluCI AATT 7 cut(s) 83, 340, 556, 675, 703, 941, 1111
MlyI GAGTC 2 cut(s) 344, 734
MmeI TCCRAC 3 cut(s) 380, 441, 1143
MnlI CCTC 7 cut(s) 166, 340, 365, 607, 883, 1047, 1118
MroXI GAANNNNTTC 2 cut(s) 83, 547
MseI TTAA 5 cut(s) 132, 141, 164, 339, 707
MslI CAYNNNNRTG 5 cut(s) 132, 928, 1032, 1074, 1198
MspI CCGG 1 cut(s) 1145
MunI CAATTG 1 cut(s) 1111
Mva1269I GAATGC 1 cut(s) 153
MvnI CGCG 1 cut(s) 476
MwoI GCNNNNNNNGC 2 cut(s) 837, 841
NcoI CCATGG 1 cut(s) 99
NdeII GATC 6 cut(s) 66, 235, 391, 648, 865, 1138
NlaIV GGNNCC 1 cut(s) 1036
NmuCI GTSAC 4 cut(s) 244, 289, 760, 1118
PagI TCATGA 3 cut(s) 457, 786, 1199
PciSI GCTCTTC 1 cut(s) 398
PctI GAATGC 1 cut(s) 153
PdmI GAANNNNTTC 2 cut(s) 83, 547
PfeI GAWTC 3 cut(s) 533, 715, 1003
PinAI ACCGGT 1 cut(s) 1144
PkrI GCNGC 1 cut(s) 948
PleI GAGTC 2 cut(s) 344, 734
PpsI GAGTC 2 cut(s) 344, 734
Psp124BI GAGCTC 1 cut(s) 410
PspN4I GGNNCC 1 cut(s) 1036
RsaI GTAC 2 cut(s) 112, 699
RsaNI GTAC 2 cut(s) 111, 698
RseI CAYNNNNRTG 5 cut(s) 132, 928, 1032, 1074, 1198
SacI GAGCTC 1 cut(s) 410
SapI GCTCTTC 1 cut(s) 398
SaqAI TTAA 5 cut(s) 132, 141, 164, 339, 707
SatI GCNGC 1 cut(s) 947
Sau3AI GATC 6 cut(s) 66, 235, 391, 648, 865, 1138
SchI GAGTC 2 cut(s) 344, 734
SduI GDGCHC 3 cut(s) 410, 471, 736
SfaNI GCATC 3 cut(s) 224, 953, 1069
SfcI CTRYAG 1 cut(s) 88
SmiMI CAYNNNNRTG 5 cut(s) 132, 928, 1032, 1074, 1198
SmlI CTYRAG 2 cut(s) 74, 224
SmoI CTYRAG 2 cut(s) 74, 224
Sse9I AATT 7 cut(s) 83, 340, 556, 675, 703, 941, 1111
SsiI CCGC 1 cut(s) 921
SspMI CTAG 3 cut(s) 44, 354, 369
SstI GAGCTC 1 cut(s) 410
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 2 cut(s) 162, 455
TaiI ACGT 2 cut(s) 14, 992
TaqI TCGA 5 cut(s) 282, 388, 541, 738, 1052
TasI AATT 7 cut(s) 83, 340, 556, 675, 703, 941, 1111
TatI WGTACW 1 cut(s) 110
TfiI GAWTC 3 cut(s) 533, 715, 1003
Tru1I TTAA 5 cut(s) 132, 141, 164, 339, 707
Tru9I TTAA 5 cut(s) 132, 141, 164, 339, 707
TscAI CASTG 2 cut(s) 488, 648
TseFI GTSAC 4 cut(s) 244, 289, 760, 1118
TseI GCWGC 1 cut(s) 946
Tsp45I GTSAC 4 cut(s) 244, 289, 760, 1118
TspGWI ACGGA 2 cut(s) 4, 20
TspRI CASTG 2 cut(s) 488, 648
VneI GTGCAC 1 cut(s) 732
XapI RAATTY 2 cut(s) 556, 675
XbaI TCTAGA 1 cut(s) 353
XmnI GAANNNNTTC 2 cut(s) 83, 547
XspI CTAG 3 cut(s) 44, 354, 369
ZraI GACGTC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.