Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000278

Physical Location & Seq

Genomic Coordinates Reverse (-)

13031860 .. 13032672

Gene Structure 813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g21591.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGGAGAAGGTGCGAGTCTCATGGAGCACATGAGCGTGTTCAGCGGATTGATTAATCAACTAGCAAAAGTTGATGTAAAGATTGAGGAAAAAGATCAAGCCCTTCTACTTCTTACCTCGCTTCCCGATTCGTATGAGAATATCATCACTACAATCTTGTATGGTAAGGACACATTGAAGATGGAGGAGGTGGAATCAACTCTCTTGTCTCACGAGAAGCGGAGGAAAGCCGATGATTCCCAGAGTTCCGTCTTTGTTGCTCATGATCAGAATCAAAGGGGAAAGTCAACTGCCAAAGGATATAAAGAACATAGCGGGTCTAAATCCAGGGGCAAAGGAAAGGGCAAGCAATGCTACAAGTGCAAGGAGTGGGGGCACATAAGGCCAGATTGTCTGTTGTTGAAAGAGAAGGATGATAAGGGCTCAGATTGCTTCATGACTGGTATAGCACAGACTTCTTATGATTTTGGAGAATTTCTCACGGTCTCCAAAGAAGTCCAGGGATTTGTGACTTGGGGTGATGGAACAAGGCGTCGTGTCATGGGTGTTGGAACGTTGAAGGTCAAAATGTTTGATGGGGTAGTTCGCTCTTTGGGTGATGTGGTGTATGTCCCAAAGTTTATGAGAAATTTAATATCACTGAGCCAGTTAAACTCTAAAGGTTGCAGGGTTTCTTCAGCAGGGGGAGTTATGAAAGTATACGTGGCTGCATGGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

240

Amino Acids

26.5

Weight (kDa)

9.06

Isoelectric Point (pI)

29.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Retrotran_gag_2	PF14223	1 - 79	1.2e-16	gag-polypeptide of LTR copia-type
Pol_BBD	PF22936	159 - 222	9.3e-14	Pol polyprotein, beta-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29785
fragaria_vesca	FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica	MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica	Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis	pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis	RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii	Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa	Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha	Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana	Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	699
AciI	CCGC	3 cut(s)	45, 220, 315
AclI	AACGTT	1 cut(s)	554
AcsI	RAATTY	2 cut(s)	473, 628
AcuI	CTGAAG	1 cut(s)	660
AcyI	GRCGYC	1 cut(s)	532
AgsI	TTSAA	3 cut(s)	178, 403, 559
AjnI	CCWGG	2 cut(s)	326, 498
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	3 cut(s)	23, 213, 490
AoxI	GGCC	1 cut(s)	383
ApeKI	GCWGC	1 cut(s)	707
ApoI	RAATTY	2 cut(s)	473, 628
AseI	ATTAAT	1 cut(s)	54
AspS9I	GGNCC	1 cut(s)	714
AsuHPI	GGTGA	2 cut(s)	530, 608
AvaII	GGWCC	1 cut(s)	714
BaeGI	GKGCMC	1 cut(s)	378
BanII	GRGCYC	1 cut(s)	425
BauI	CACGAG	1 cut(s)	212
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	694
BccI	CCATC	3 cut(s)	175, 515, 569
BciT130I	CCWGG	2 cut(s)	328, 500
BclI	TGATCA	1 cut(s)	265
BcoDI	GTCTC	3 cut(s)	23, 213, 490
BfaI	CTAG	1 cut(s)	62
BisI	GCNGC	1 cut(s)	708
BlsI	GCNGC	1 cut(s)	709
Bme1390I	CCNGG	2 cut(s)	328, 500
Bme18I	GGWCC	1 cut(s)	714
BmgT120I	GGNCC	1 cut(s)	714
BmrFI	CCNGG	2 cut(s)	328, 500
BplI	GAGNNNNNCTC	2 cut(s)	462, 494
BsaAI	YACGTR	1 cut(s)	703
BsaBI	GATNNNNATC	1 cut(s)	270
BsaHI	GRCGYC	1 cut(s)	532
BsaI	GGTCTC	1 cut(s)	490
BsaJI	CCNNGG	2 cut(s)	327, 499
Bse1I	ACTGG	2 cut(s)	445, 646
Bse3DI	GCAATG	1 cut(s)	356
Bse8I	GATNNNNATC	1 cut(s)	270
BseBI	CCWGG	2 cut(s)	328, 500
BseDI	CCNNGG	2 cut(s)	327, 499
BseGI	GGATG	1 cut(s)	418
BseJI	GATNNNNATC	1 cut(s)	270
BseMI	GCAATG	1 cut(s)	356
BseMII	CTCAG	2 cut(s)	438, 632
BseNI	ACTGG	2 cut(s)	445, 646
BseRI	GAGGAG	1 cut(s)	200
BseSI	GKGCMC	1 cut(s)	378
BseXI	GCAGC	1 cut(s)	694
BshFI	GGCC	1 cut(s)	385
BsiHKAI	GWGCWC	1 cut(s)	30
BslFI	GGGAC	1 cut(s)	596
BsmAI	GTCTC	3 cut(s)	23, 213, 490
BsmFI	GGGAC	1 cut(s)	596
BsnI	GGCC	1 cut(s)	385
Bso31I	GGTCTC	1 cut(s)	490
Bsp1286I	GDGCHC	3 cut(s)	30, 378, 425
Bsp143I	GATC	2 cut(s)	94, 265
BspACI	CCGC	3 cut(s)	45, 220, 315
BspANI	GGCC	1 cut(s)	385
BspCNI	CTCAG	2 cut(s)	437, 633
BspHI	TCATGA	2 cut(s)	262, 435
BspTNI	GGTCTC	1 cut(s)	490
BsrDI	GCAATG	1 cut(s)	356
BsrI	ACTGG	2 cut(s)	445, 646
BssECI	CCNNGG	2 cut(s)	327, 499
BssMI	GATC	2 cut(s)	94, 265
BssNAI	GTATAC	1 cut(s)	700
BssNI	GRCGYC	1 cut(s)	532
BssSI	CACGAG	1 cut(s)	212
Bst1107I	GTATAC	1 cut(s)	700
Bst2BI	CACGAG	1 cut(s)	212
Bst2UI	CCWGG	2 cut(s)	328, 500
Bst4CI	ACNGT	1 cut(s)	484
BstACI	GRCGYC	1 cut(s)	532
BstAPI	GCANNNNNTGC	1 cut(s)	351
BstBAI	YACGTR	1 cut(s)	703
BstC8I	GCNNGC	1 cut(s)	347
BstDEI	CTNAG	2 cut(s)	424, 641
BstF5I	GGATG	1 cut(s)	418
BstKTI	GATC	2 cut(s)	97, 268
BstMAI	GTCTC	3 cut(s)	23, 213, 490
BstMBI	GATC	2 cut(s)	94, 265
BstMWI	GCNNNNNNNGC	5 cut(s)	42, 351, 360, 382, 429
BstNI	CCWGG	2 cut(s)	328, 500
BstSCI	CCNGG	2 cut(s)	326, 498
BstSLI	GKGCMC	1 cut(s)	378
BstV1I	GCAGC	1 cut(s)	694
BstZ17I	GTATAC	1 cut(s)	700
BsuRI	GGCC	1 cut(s)	385
BtsCI	GGATG	1 cut(s)	418
BtsIMutI	CAGTG	1 cut(s)	638
Cac8I	GCNNGC	1 cut(s)	347
CciI	TCATGA	2 cut(s)	262, 435
Cfr13I	GGNCC	1 cut(s)	714
CseI	GACGC	1 cut(s)	521
CviAII	CATG	6 cut(s)	22, 31, 263, 436, 541, 711
CviJI	RGCY	6 cut(s)	101, 230, 385, 423, 645, 707
CviKI_1	RGCY	6 cut(s)	101, 230, 385, 423, 645, 707
DdeI	CTNAG	2 cut(s)	424, 641
DpnI	GATC	2 cut(s)	96, 267
DpnII	GATC	2 cut(s)	94, 265
Eco24I	GRGCYC	1 cut(s)	425
Eco31I	GGTCTC	1 cut(s)	490
Eco47I	GGWCC	1 cut(s)	714
Eco57I	CTGAAG	1 cut(s)	660
EcoRII	CCWGG	2 cut(s)	326, 498
EcoT38I	GRGCYC	1 cut(s)	425
FaeI	CATG	6 cut(s)	25, 34, 266, 439, 544, 714
FaqI	GGGAC	1 cut(s)	596
FatI	CATG	6 cut(s)	21, 30, 262, 435, 540, 710
FauI	CCCGC	1 cut(s)	308
FbaI	TGATCA	1 cut(s)	265
FblI	GTMKAC	1 cut(s)	699
Fnu4HI	GCNGC	1 cut(s)	708
FokI	GGATG	1 cut(s)	425
FriOI	GRGCYC	1 cut(s)	425
Fsp4HI	GCNGC	1 cut(s)	708
FspBI	CTAG	1 cut(s)	62
GluI	GCNGC	1 cut(s)	708
HaeIII	GGCC	1 cut(s)	385
HgaI	GACGC	1 cut(s)	521
Hin1I	GRCGYC	1 cut(s)	532
Hin1II	CATG	6 cut(s)	25, 34, 266, 439, 544, 714
HincII	GTYRAC	1 cut(s)	288
HindII	GTYRAC	1 cut(s)	288
HinfI	GANTC	5 cut(s)	16, 128, 194, 236, 271
HphI	GGTGA	2 cut(s)	530, 608
Hpy166II	GTNNAC	2 cut(s)	288, 700
Hpy188I	TCNGA	2 cut(s)	270, 427
Hpy188III	TCNNGA	5 cut(s)	125, 212, 263, 436, 717
Hpy8I	GTNNAC	2 cut(s)	288, 700
Hpy99I	CGWCG	1 cut(s)	537
HpyAV	CCTTC	3 cut(s)	113, 403, 553
HpyCH4III	ACNGT	1 cut(s)	484
HpyCH4IV	ACGT	2 cut(s)	554, 702
HpyCH4V	TGCA	3 cut(s)	363, 666, 710
HpyF10VI	GCNNNNNNNGC	5 cut(s)	42, 351, 360, 382, 429
HpyF3I	CTNAG	2 cut(s)	424, 641
HpySE526I	ACGT	2 cut(s)	554, 702
Hsp92I	GRCGYC	1 cut(s)	532
Hsp92II	CATG	6 cut(s)	25, 34, 266, 439, 544, 714
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	94, 265
LmnI	GCTCC	1 cut(s)	25
Lsp1109I	GCAGC	1 cut(s)	694
MaeI	CTAG	1 cut(s)	62
MaeII	ACGT	2 cut(s)	554, 702
MaeIII	GTNAC	1 cut(s)	508
MalI	GATC	2 cut(s)	96, 267
MboI	GATC	2 cut(s)	94, 265
MboII	GAAGA	2 cut(s)	190, 666
MhlI	GDGCHC	3 cut(s)	30, 378, 425
MluCI	AATT	2 cut(s)	473, 628
MlyI	GAGTC	1 cut(s)	25
MmeI	TCCRAC	1 cut(s)	529
MnlI	CCTC	5 cut(s)	79, 127, 178, 181, 216
MseI	TTAA	3 cut(s)	54, 632, 650
MslI	CAYNNNNRTG	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	45
MspR9I	CCNGG	2 cut(s)	328, 500
MvaI	CCWGG	2 cut(s)	328, 500
MwoI	GCNNNNNNNGC	5 cut(s)	42, 351, 360, 382, 429
NdeII	GATC	2 cut(s)	94, 265
NlaIII	CATG	6 cut(s)	25, 34, 266, 439, 544, 714
NmuCI	GTSAC	1 cut(s)	508
PagI	TCATGA	2 cut(s)	262, 435
PfeI	GAWTC	4 cut(s)	128, 194, 236, 271
PkrI	GCNGC	1 cut(s)	709
PleI	GAGTC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	24
Ppu21I	YACGTR	1 cut(s)	703
PshBI	ATTAAT	1 cut(s)	54
Psp1406I	AACGTT	1 cut(s)	554
Psp6I	CCWGG	2 cut(s)	326, 498
PspGI	CCWGG	2 cut(s)	326, 498
PspPI	GGNCC	1 cut(s)	714
RseI	CAYNNNNRTG	1 cut(s)	35
SaqAI	TTAA	3 cut(s)	54, 632, 650
SatI	GCNGC	1 cut(s)	708
Sau3AI	GATC	2 cut(s)	94, 265
Sau96I	GGNCC	1 cut(s)	714
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	2 cut(s)	328, 500
SduI	GDGCHC	3 cut(s)	30, 378, 425
SetI	ASST	7 cut(s)	13, 119, 192, 557, 564, 664, 705
SinI	GGWCC	1 cut(s)	714
SmiMI	CAYNNNNRTG	1 cut(s)	35
Sse9I	AATT	2 cut(s)	473, 628
SsiI	CCGC	3 cut(s)	45, 220, 315
SspMI	CTAG	1 cut(s)	62
StyD4I	CCNGG	2 cut(s)	326, 498
TaaI	ACNGT	1 cut(s)	484
TaiI	ACGT	2 cut(s)	557, 705
TasI	AATT	2 cut(s)	473, 628
TfiI	GAWTC	4 cut(s)	128, 194, 236, 271
Tru1I	TTAA	3 cut(s)	54, 632, 650
Tru9I	TTAA	3 cut(s)	54, 632, 650
TscAI	CASTG	1 cut(s)	645
TseFI	GTSAC	1 cut(s)	508
TseI	GCWGC	1 cut(s)	707
Tsp45I	GTSAC	1 cut(s)	508
TspDTI	ATGAA	2 cut(s)	424, 707
TspGWI	ACGGA	1 cut(s)	238
TspRI	CASTG	1 cut(s)	645
VpaK11BI	GGWCC	1 cut(s)	714
VspI	ATTAAT	1 cut(s)	54
XapI	RAATTY	2 cut(s)	473, 628
XmiI	GTMKAC	1 cut(s)	699
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.