RchiOBHm_Chr7g0183451

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000278
Physical Location & Seq
Forward (+)
4317514 .. 4321957
4444 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16367

Sequence Viewer

Length: 867 bp
ATGATGACAAAGAGACACAGCAGTGGAATCTCCTCACCGTTTCCTCCCGTGGATGTAACCCTTCGATTTTGGGGTGAACCACGTAAATCTTTGGCTATCTCTTTAGAAGATGTCAAAGCAGCTTTGAGTTCTAGAGAACTGAAGAAGAAAGTGCTAGAGAATTTGAATGATAATCAAGATCATGGTTTGGTAGTTCGTGGTAGAGAAGAAAGCAGTAATAGAGGAAGTTCAAGATCTAAGTCTCGAATTAGAAAAGGTACGTGCCACTATTGTCACAAAGAAGGTCATTGGAAACCTGAATGCCCTAGACTCAAACATAGAGGTAAGTATTCAGAAAAATCTTCTGGTGATGATGCGAATTATGTGGATGATGAGTCTACTACTTTTGATTTTACCTTATTTGCTGGTGATTTTTCTGTTAATGCTTGGTTGCTTGATTCGGGTTGCTCGCACCATATGTGCTTCAATCGAGATTGGTTTGACAATTATCAGTCTATTGATGGAAGGTCTGTCTTTATGGGGGATAATACTCCTAATAAAGTAATGGGGATTGGAACAGTTCGAATTAAGATGCATGATGAAATTATCAAGACTTTGACAAAGGTTAGGCATGTCCCAGATTTGAAGAACAATTTGATATCTTTGGGTACTCTTGACTTACAAGGCTATAAGTATTCGTCTCAAGGTGGAGTTTTAAGAGTTAGTAAGGGTGCTCTTGTTGTGATTCAGGGAAAGTTGATTTGTCATAACCTCTACGTACTTCAGGGTAGCACAATTATTGGTGCTTCATCAGTTGCCTCTTTATCAAATCCAAATTCAGATTTTGGTACATGTTTGTTTTTCTTTTGCTTTGTTTGTTACTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC PAH

Protein Analysis

288

Amino Acids

32.24

Weight (kDa)

8.94

Isoelectric Point (pI)

43.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pol_BBD PF22936 143 - 223 1.1e-30 Pol polyprotein, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 377
AcsI RAATTY 2 cut(s) 160, 814
AcuI CTGAAG 2 cut(s) 161, 746
AfaI GTAC 4 cut(s) 259, 649, 759, 829
AflIII ACRYGT 1 cut(s) 830
AgsI TTSAA 4 cut(s) 166, 231, 466, 625
AleI CACNNNNGTG 1 cut(s) 21
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
Alw21I GWGCWC 1 cut(s) 715
Alw26I GTCTC 3 cut(s) 7, 246, 684
ApeKI GCWGC 1 cut(s) 119
ApoI RAATTY 2 cut(s) 160, 814
AsuHPI GGTGA 4 cut(s) 27, 86, 359, 419
AsuII TTCGAA 1 cut(s) 562
Bbv12I GWGCWC 1 cut(s) 715
BbvI GCAGC 1 cut(s) 131
BccI CCATC 1 cut(s) 494
BcoDI GTCTC 3 cut(s) 7, 246, 684
BfaI CTAG 3 cut(s) 132, 155, 306
BglII AGATCT 1 cut(s) 233
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
BmsI GCATC 2 cut(s) 343, 561
Bpu14I TTCGAA 1 cut(s) 562
BpuEI CTTGAG 1 cut(s) 666
BsaAI YACGTR 3 cut(s) 83, 261, 757
BsaJI CCNNGG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 2 cut(s) 58, 373
BseRI GAGGAG 1 cut(s) 22
BseXI GCAGC 1 cut(s) 131
BsiHKAI GWGCWC 1 cut(s) 715
BslFI GGGAC 1 cut(s) 599
BsmAI GTCTC 3 cut(s) 7, 246, 684
BsmBI CGTCTC 1 cut(s) 684
BsmFI GGGAC 1 cut(s) 599
BsmI GAATGC 1 cut(s) 305
Bsp119I TTCGAA 1 cut(s) 562
Bsp1286I GDGCHC 1 cut(s) 715
Bsp143I GATC 2 cut(s) 178, 233
BspT104I TTCGAA 1 cut(s) 562
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 2 cut(s) 178, 233
Bst4CI ACNGT 3 cut(s) 39, 559, 863
BstBAI YACGTR 3 cut(s) 83, 261, 757
BstBI TTCGAA 1 cut(s) 562
BstC8I GCNNGC 1 cut(s) 449
BstDEI CTNAG 1 cut(s) 237
BstDSI CCRYGG 1 cut(s) 48
BstF5I GGATG 2 cut(s) 58, 373
BstKTI GATC 2 cut(s) 181, 236
BstMAI GTCTC 3 cut(s) 7, 246, 684
BstMBI GATC 2 cut(s) 178, 233
BstNSI RCATGY 2 cut(s) 614, 834
BstSNI TACGTA 1 cut(s) 757
BstV1I GCAGC 1 cut(s) 131
BstX2I RGATCY 1 cut(s) 233
BstYI RGATCY 1 cut(s) 233
BtgI CCRYGG 1 cut(s) 48
BtsCI GGATG 2 cut(s) 58, 373
BtsI GCAGTG 1 cut(s) 28
BtsIMutI CAGTG 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 449
Csp6I GTAC 4 cut(s) 258, 648, 758, 828
CviAII CATG 4 cut(s) 182, 575, 611, 831
CviJI RGCY 3 cut(s) 95, 122, 666
CviKI_1 RGCY 3 cut(s) 95, 122, 666
CviQI GTAC 4 cut(s) 258, 648, 758, 828
DdeI CTNAG 1 cut(s) 237
DpnI GATC 2 cut(s) 180, 235
DpnII GATC 2 cut(s) 178, 233
Eco105I TACGTA 1 cut(s) 757
Eco32I GATATC 1 cut(s) 639
Eco57I CTGAAG 2 cut(s) 161, 746
EcoRV GATATC 1 cut(s) 639
EcoT22I ATGCAT 1 cut(s) 576
Esp3I CGTCTC 1 cut(s) 684
FaeI CATG 4 cut(s) 185, 578, 614, 834
FaqI GGGAC 1 cut(s) 599
FatI CATG 4 cut(s) 181, 574, 610, 830
FauNDI CATATG 1 cut(s) 456
FblI GTMKAC 1 cut(s) 377
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 2 cut(s) 65, 380
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 3 cut(s) 132, 155, 306
GluI GCNGC 1 cut(s) 120
Hin1II CATG 4 cut(s) 185, 578, 614, 834
HinfI GANTC 5 cut(s) 27, 309, 374, 437, 724
HphI GGTGA 4 cut(s) 27, 86, 359, 419
Hpy166II GTNNAC 2 cut(s) 77, 378
Hpy188I TCNGA 2 cut(s) 334, 820
Hpy188III TCNNGA 7 cut(s) 132, 176, 231, 243, 470, 589, 653
Hpy8I GTNNAC 2 cut(s) 77, 378
HpyAV CCTTC 3 cut(s) 71, 275, 498
HpyCH4III ACNGT 3 cut(s) 39, 559, 863
HpyCH4IV ACGT 3 cut(s) 82, 260, 756
HpyCH4V TGCA 1 cut(s) 574
HpyF3I CTNAG 1 cut(s) 237
HpySE526I ACGT 3 cut(s) 82, 260, 756
Hsp92II CATG 4 cut(s) 185, 578, 614, 834
Kzo9I GATC 2 cut(s) 178, 233
LpnPI CCDG 6 cut(s) 309, 330, 390, 630, 713, 749
Lsp1109I GCAGC 1 cut(s) 131
LweI GCATC 2 cut(s) 343, 561
MaeI CTAG 3 cut(s) 132, 155, 306
MaeII ACGT 3 cut(s) 82, 260, 756
MaeIII GTNAC 3 cut(s) 55, 272, 857
MalI GATC 2 cut(s) 180, 235
MboI GATC 2 cut(s) 178, 233
MboII GAAGA 6 cut(s) 119, 154, 157, 218, 333, 637
MflI RGATCY 1 cut(s) 233
MhlI GDGCHC 1 cut(s) 715
MluCI AATT 9 cut(s) 160, 246, 358, 484, 564, 582, 631, 774, 814
MlyI GAGTC 2 cut(s) 303, 383
MnlI CCTC 6 cut(s) 43, 54, 215, 314, 761, 808
Mph1103I ATGCAT 1 cut(s) 576
MseI TTAA 4 cut(s) 420, 567, 695, 865
MslI CAYNNNNRTG 1 cut(s) 21
Mva1269I GAATGC 1 cut(s) 305
NdeI CATATG 1 cut(s) 456
NdeII GATC 2 cut(s) 178, 233
NlaIII CATG 4 cut(s) 185, 578, 614, 834
NmuCI GTSAC 1 cut(s) 272
NsiI ATGCAT 1 cut(s) 576
NspI RCATGY 2 cut(s) 614, 834
NspV TTCGAA 1 cut(s) 562
OliI CACNNNNGTG 1 cut(s) 21
PciI ACATGT 1 cut(s) 830
PctI GAATGC 1 cut(s) 305
PfeI GAWTC 3 cut(s) 27, 437, 724
PkrI GCNGC 1 cut(s) 121
PleI GAGTC 2 cut(s) 303, 382
PpsI GAGTC 2 cut(s) 303, 382
Ppu21I YACGTR 3 cut(s) 83, 261, 757
PscI ACATGT 1 cut(s) 830
PsuI RGATCY 1 cut(s) 233
RsaI GTAC 4 cut(s) 259, 649, 759, 829
RsaNI GTAC 4 cut(s) 258, 648, 758, 828
RseI CAYNNNNRTG 1 cut(s) 21
SaqAI TTAA 4 cut(s) 420, 567, 695, 865
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 2 cut(s) 178, 233
SchI GAGTC 2 cut(s) 303, 383
SduI GDGCHC 1 cut(s) 715
SfaNI GCATC 2 cut(s) 343, 561
SfuI TTCGAA 1 cut(s) 562
SmiMI CAYNNNNRTG 1 cut(s) 21
SmlI CTYRAG 1 cut(s) 681
SmoI CTYRAG 1 cut(s) 681
SnaBI TACGTA 1 cut(s) 757
Sse9I AATT 9 cut(s) 160, 246, 358, 484, 564, 582, 631, 774, 814
SspMI CTAG 3 cut(s) 132, 155, 306
TaaI ACNGT 3 cut(s) 39, 559, 863
TaiI ACGT 3 cut(s) 85, 263, 759
TaqI TCGA 4 cut(s) 64, 244, 469, 562
TasI AATT 9 cut(s) 160, 246, 358, 484, 564, 582, 631, 774, 814
TfiI GAWTC 3 cut(s) 27, 437, 724
Tru1I TTAA 4 cut(s) 420, 567, 695, 865
Tru9I TTAA 4 cut(s) 420, 567, 695, 865
TscAI CASTG 1 cut(s) 28
TseFI GTSAC 1 cut(s) 272
TseI GCWGC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 2 cut(s) 594, 777
TspRI CASTG 1 cut(s) 28
XapI RAATTY 2 cut(s) 160, 814
XbaI TCTAGA 1 cut(s) 131
XceI RCATGY 2 cut(s) 614, 834
XmiI GTMKAC 1 cut(s) 377
XspI CTAG 3 cut(s) 132, 155, 306
Zsp2I ATGCAT 1 cut(s) 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.