disease resistance protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 24 - 185 | 4.6e-35 | gag-polypeptide of LTR copia-type |
| Pol_BBD | PF22936 | 281 - 361 | 3.8e-29 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 388 - 455 | 3e-19 | GAG-pre-integrase domain |
| rve | PF00665 | 477 - 570 | 2.2e-13 | Integrase core domain |
| SH3_retrovirus | PF25597 | 644 - 703 | 1.9e-21 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 816 - 1063 | 7.7e-68 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2545 |
| AatII | GACGTC | 1 cut(s) | 310 |
| Acc36I | ACCTGC | 1 cut(s) | 2545 |
| Acc65I | GGTACC | 1 cut(s) | 3402 |
| AccB1I | GGYRCC | 2 cut(s) | 103, 3402 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1245, 2276, 2680 |
| AccI | GTMKAC | 5 cut(s) | 1116, 1858, 3161, 3209, 3590 |
| AccII | CGCG | 1 cut(s) | 1452 |
| AciI | CCGC | 5 cut(s) | 107, 233, 1811, 3624, 3837 |
| AclWI | GGATC | 6 cut(s) | 135, 1338, 2342, 2355, 2685, 3353 |
| AcoI | YGGCCR | 2 cut(s) | 147, 1315 |
| AcuI | CTGAAG | 4 cut(s) | 1692, 2187, 2423, 3618 |
| AcyI | GRCGYC | 3 cut(s) | 104, 307, 1545 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 805, 1245, 1853, 1917, 2276, 2480, 2543, 2680, 2779 |
| AflIII | ACRYGT | 1 cut(s) | 3249 |
| AhlI | ACTAGT | 1 cut(s) | 563 |
| AjnI | CCWGG | 5 cut(s) | 798, 2673, 2773, 3146, 3361 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3358, 3390 |
| Alw26I | GTCTC | 5 cut(s) | 2037, 2260, 3020, 3258, 3434 |
| AlwI | GGATC | 6 cut(s) | 135, 1338, 2342, 2355, 2685, 3353 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 758, 2028, 2680, 3626 |
| Ama87I | CYCGRG | 2 cut(s) | 622, 3255 |
| AoxI | GGCC | 4 cut(s) | 147, 801, 1315, 3311 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 2975, 3007, 3568, 3600 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 47, 635, 3107 |
| Asp718I | GGTACC | 1 cut(s) | 3402 |
| AspLEI | GCGC | 1 cut(s) | 106 |
| AspS9I | GGNCC | 4 cut(s) | 1442, 1844, 2950, 3753 |
| AsuC2I | CCSGG | 1 cut(s) | 856 |
| AsuHPI | GGTGA | 8 cut(s) | 199, 344, 1825, 2526, 2613, 3368, 3820, 3841 |
| AvaI | CYCGRG | 2 cut(s) | 622, 3255 |
| AvaII | GGWCC | 4 cut(s) | 1442, 1844, 2950, 3753 |
| BaeGI | GKGCMC | 1 cut(s) | 3824 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 747, 780 |
| BalI | TGGCCA | 2 cut(s) | 149, 1317 |
| BamHI | GGATCC | 1 cut(s) | 2347 |
| BanI | GGYRCC | 2 cut(s) | 103, 3402 |
| BauI | CACGAG | 1 cut(s) | 2562 |
| BbsI | GAAGAC | 4 cut(s) | 801, 1055, 2711, 2790 |
| BbvCI | CCTCAGC | 3 cut(s) | 2337, 2541, 3234 |
| BccI | CCATC | 7 cut(s) | 139, 908, 986, 1453, 2000, 2044, 2753 |
| BceAI | ACGGC | 1 cut(s) | 2344 |
| BciT130I | CCWGG | 5 cut(s) | 800, 2675, 2775, 3148, 3363 |
| BciVI | GTATCC | 1 cut(s) | 844 |
| BclI | TGATCA | 2 cut(s) | 2476, 3682 |
| BcnI | CCSGG | 1 cut(s) | 856 |
| BcoDI | GTCTC | 5 cut(s) | 2037, 2260, 3020, 3258, 3434 |
| BcuI | ACTAGT | 1 cut(s) | 563 |
| BfmI | CTRYAG | 4 cut(s) | 582, 2327, 3082, 3690 |
| BfoI | RGCGCY | 1 cut(s) | 107 |
| BfuAI | ACCTGC | 1 cut(s) | 2545 |
| BfuI | GTATCC | 1 cut(s) | 844 |
| BglII | AGATCT | 3 cut(s) | 2739, 3078, 3170 |
| Bme1390I | CCNGG | 6 cut(s) | 800, 856, 2675, 2775, 3148, 3363 |
| Bme18I | GGWCC | 4 cut(s) | 1442, 1844, 2950, 3753 |
| BmeT110I | CYCGRG | 2 cut(s) | 622, 3255 |
| BmgT120I | GGNCC | 4 cut(s) | 1442, 1844, 2950, 3753 |
| BmiI | GGNNCC | 6 cut(s) | 105, 661, 1443, 2349, 3404, 3861 |
| BmrFI | CCNGG | 6 cut(s) | 800, 856, 2675, 2775, 3148, 3363 |
| BmrI | ACTGGG | 1 cut(s) | 1602 |
| BmuI | ACTGGG | 1 cut(s) | 1602 |
| BpiI | GAAGAC | 4 cut(s) | 801, 1055, 2711, 2790 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 481, 513, 2167, 2199, 2603, 2635 |
| BpmI | CTGGAG | 6 cut(s) | 176, 527, 1652, 1772, 2702, 3510 |
| Bpu10I | CCTNAGC | 3 cut(s) | 2337, 2541, 3234 |
| BpuEI | CTTGAG | 3 cut(s) | 275, 1489, 2708 |
| BpuMI | CCSGG | 1 cut(s) | 856 |
| Bsa29I | ATCGAT | 1 cut(s) | 396 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2873 |
| BsaHI | GRCGYC | 3 cut(s) | 104, 307, 1545 |
| BsaI | GGTCTC | 4 cut(s) | 2037, 2260, 3020, 3434 |
| BsaJI | CCNNGG | 5 cut(s) | 210, 804, 855, 1840, 2773 |
| BsaWI | WCCGGW | 2 cut(s) | 1698, 3399 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 31, 61, 1977, 1995, 2007, 2025 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 805, 1245, 1853, 1917, 2276, 2480, 2543, 2680, 2779 |
| Bse118I | RCCGGY | 1 cut(s) | 3856 |
| Bse1I | ACTGG | 5 cut(s) | 150, 597, 647, 1597, 3523 |
| Bse3DI | GCAATG | 1 cut(s) | 2421 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2873 |
| BseBI | CCWGG | 5 cut(s) | 800, 2675, 2775, 3148, 3363 |
| BseCI | ATCGAT | 1 cut(s) | 396 |
| BseDI | CCNNGG | 5 cut(s) | 210, 804, 855, 1840, 2773 |
| BseGI | GGATG | 8 cut(s) | 338, 424, 517, 841, 1234, 1287, 3129, 3164 |
| BseJI | GATNNNNATC | 1 cut(s) | 2873 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 805, 1245, 1853, 1917, 2276, 2480, 2543, 2680, 2779 |
| BseMI | GCAATG | 1 cut(s) | 2421 |
| BseNI | ACTGG | 5 cut(s) | 150, 597, 647, 1597, 3523 |
| BseRI | GAGGAG | 5 cut(s) | 173, 236, 2354, 3008, 3251 |
| BseSI | GKGCMC | 1 cut(s) | 3824 |
| BsgI | GTGCAG | 2 cut(s) | 3045, 3294 |
| Bsh1236I | CGCG | 1 cut(s) | 1452 |
| Bsh1285I | CGRYCG | 1 cut(s) | 558 |
| BshFI | GGCC | 4 cut(s) | 149, 803, 1317, 3313 |
| BshNI | GGYRCC | 2 cut(s) | 103, 3402 |
| BshVI | ATCGAT | 1 cut(s) | 396 |
| BsiEI | CGRYCG | 1 cut(s) | 558 |
| BsiHKCI | CYCGRG | 2 cut(s) | 622, 3255 |
| BsiSI | CCGG | 4 cut(s) | 855, 1699, 3400, 3857 |
| BslFI | GGGAC | 4 cut(s) | 624, 714, 2756, 2815 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 805, 1245, 1853, 1917, 2276, 2480, 2543, 2680, 2779 |
| BsmAI | GTCTC | 5 cut(s) | 2037, 2260, 3020, 3258, 3434 |
| BsmFI | GGGAC | 4 cut(s) | 624, 714, 2756, 2815 |
| BsnI | GGCC | 4 cut(s) | 149, 803, 1317, 3313 |
| Bso31I | GGTCTC | 4 cut(s) | 2037, 2260, 3020, 3434 |
| BsoBI | CYCGRG | 2 cut(s) | 622, 3255 |
| Bsp1286I | GDGCHC | 1 cut(s) | 3824 |
| Bsp1407I | TGTACA | 1 cut(s) | 1004 |
| BspACI | CCGC | 5 cut(s) | 107, 233, 1811, 3624, 3837 |
| BspANI | GGCC | 4 cut(s) | 149, 803, 1317, 3313 |
| BspDI | ATCGAT | 1 cut(s) | 396 |
| BspFNI | CGCG | 1 cut(s) | 1452 |
| BspHI | TCATGA | 4 cut(s) | 1524, 2353, 3679, 3745 |
| BspLI | GGNNCC | 6 cut(s) | 105, 661, 1443, 2349, 3404, 3861 |
| BspMI | ACCTGC | 1 cut(s) | 2545 |
| BspPI | GGATC | 6 cut(s) | 135, 1338, 2342, 2355, 2685, 3353 |
| BspT107I | GGYRCC | 2 cut(s) | 103, 3402 |
| BspTNI | GGTCTC | 4 cut(s) | 2037, 2260, 3020, 3434 |
| BsrDI | GCAATG | 1 cut(s) | 2421 |
| BsrFI | RCCGGY | 1 cut(s) | 3856 |
| BsrGI | TGTACA | 1 cut(s) | 1004 |
| BsrI | ACTGG | 5 cut(s) | 150, 597, 647, 1597, 3523 |
| BssAI | RCCGGY | 1 cut(s) | 3856 |
| BssECI | CCNNGG | 5 cut(s) | 210, 804, 855, 1840, 2773 |
| BssNAI | GTATAC | 1 cut(s) | 1859 |
| BssNI | GRCGYC | 3 cut(s) | 104, 307, 1545 |
| BssSI | CACGAG | 1 cut(s) | 2562 |
| BssT1I | CCWWGG | 1 cut(s) | 804 |
| Bst1107I | GTATAC | 1 cut(s) | 1859 |
| Bst2BI | CACGAG | 1 cut(s) | 2562 |
| Bst2UI | CCWGG | 5 cut(s) | 800, 2675, 2775, 3148, 3363 |
| Bst6I | CTCTTC | 2 cut(s) | 2730, 3383 |
| BstACI | GRCGYC | 3 cut(s) | 104, 307, 1545 |
| BstAUI | TGTACA | 1 cut(s) | 1004 |
| BstC8I | GCNNGC | 6 cut(s) | 75, 1026, 1412, 1769, 2409, 3381 |
| BstDSI | CCRYGG | 1 cut(s) | 1840 |
| BstF5I | GGATG | 8 cut(s) | 338, 424, 517, 841, 1234, 1287, 3129, 3164 |
| BstFNI | CGCG | 1 cut(s) | 1452 |
| BstH2I | RGCGCY | 1 cut(s) | 107 |
| BstHHI | GCGC | 1 cut(s) | 106 |
| BstMAI | GTCTC | 5 cut(s) | 2037, 2260, 3020, 3258, 3434 |
| BstMCI | CGRYCG | 1 cut(s) | 558 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 146, 301, 767, 809, 1205, 1255, 3620 |
| BstNI | CCWGG | 5 cut(s) | 800, 2675, 2775, 3148, 3363 |
| BstNSI | RCATGY | 4 cut(s) | 1028, 1771, 3253, 3329 |
| BstSCI | CCNGG | 6 cut(s) | 798, 854, 2673, 2773, 3146, 3361 |
| BstSFI | CTRYAG | 4 cut(s) | 582, 2327, 3082, 3690 |
| BstSLI | GKGCMC | 1 cut(s) | 3824 |
| BstUI | CGCG | 1 cut(s) | 1452 |
| BstV2I | GAAGAC | 4 cut(s) | 801, 1055, 2711, 2790 |
| BstX2I | RGATCY | 6 cut(s) | 1330, 2347, 2677, 2739, 3078, 3170 |
| BstYI | RGATCY | 6 cut(s) | 1330, 2347, 2677, 2739, 3078, 3170 |
| BstZ17I | GTATAC | 1 cut(s) | 1859 |
| Bsu15I | ATCGAT | 1 cut(s) | 396 |
| BsuI | GTATCC | 1 cut(s) | 844 |
| BsuRI | GGCC | 4 cut(s) | 149, 803, 1317, 3313 |
| BsuTUI | ATCGAT | 1 cut(s) | 396 |
| BtgI | CCRYGG | 1 cut(s) | 1840 |
| BtgZI | GCGATG | 1 cut(s) | 1355 |
| BtsCI | GGATG | 8 cut(s) | 338, 424, 517, 841, 1234, 1287, 3129, 3164 |
| BtsI | GCAGTG | 2 cut(s) | 1571, 3822 |
| BtsIMutI | CAGTG | 8 cut(s) | 369, 604, 1571, 2163, 2846, 3028, 3585, 3822 |
| BveI | ACCTGC | 1 cut(s) | 2545 |
| Cac8I | GCNNGC | 6 cut(s) | 75, 1026, 1412, 1769, 2409, 3381 |
| CaiI | CAGNNNCTG | 4 cut(s) | 758, 2028, 2680, 3626 |
| CciI | TCATGA | 4 cut(s) | 1524, 2353, 3679, 3745 |
| CfoI | GCGC | 1 cut(s) | 106 |
| Cfr10I | RCCGGY | 1 cut(s) | 3856 |
| Cfr13I | GGNCC | 4 cut(s) | 1442, 1844, 2950, 3753 |
| ClaI | ATCGAT | 1 cut(s) | 396 |
| CseI | GACGC | 2 cut(s) | 533, 1553 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 80, 115, 936, 971 |
| DinI | GGCGCC | 1 cut(s) | 105 |
| EaeI | YGGCCR | 2 cut(s) | 147, 1315 |
| Eam1104I | CTCTTC | 2 cut(s) | 2730, 3383 |
| EarI | CTCTTC | 2 cut(s) | 2730, 3383 |
| Eco130I | CCWWGG | 1 cut(s) | 804 |
| Eco147I | AGGCCT | 1 cut(s) | 3313 |
| Eco31I | GGTCTC | 4 cut(s) | 2037, 2260, 3020, 3434 |
| Eco47I | GGWCC | 4 cut(s) | 1442, 1844, 2950, 3753 |
| Eco57I | CTGAAG | 4 cut(s) | 1692, 2187, 2423, 3618 |
| Eco88I | CYCGRG | 2 cut(s) | 622, 3255 |
| EcoRII | CCWGG | 5 cut(s) | 798, 2673, 2773, 3146, 3361 |
| EcoT14I | CCWWGG | 1 cut(s) | 804 |
| EgeI | GGCGCC | 1 cut(s) | 105 |
| EheI | GGCGCC | 1 cut(s) | 105 |
| ErhI | CCWWGG | 1 cut(s) | 804 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 1398, 1430, 1498, 1530, 2795, 2827, 3095, 3127 |
| FaqI | GGGAC | 4 cut(s) | 624, 714, 2756, 2815 |
| FauI | CCCGC | 1 cut(s) | 3844 |
| FauNDI | CATATG | 1 cut(s) | 1266 |
| FbaI | TGATCA | 2 cut(s) | 2476, 3682 |
| FblI | GTMKAC | 5 cut(s) | 1116, 1858, 3161, 3209, 3590 |
| FokI | GGATG | 8 cut(s) | 325, 431, 524, 848, 1241, 1294, 3116, 3151 |
| GlaI | GCGC | 1 cut(s) | 105 |
| GsuI | CTGGAG | 6 cut(s) | 176, 527, 1652, 1772, 2702, 3510 |
| HaeII | RGCGCY | 1 cut(s) | 107 |
| HaeIII | GGCC | 4 cut(s) | 149, 803, 1317, 3313 |
| HapII | CCGG | 4 cut(s) | 855, 1699, 3400, 3857 |
| HgaI | GACGC | 2 cut(s) | 533, 1553 |
| HhaI | GCGC | 1 cut(s) | 106 |
| Hin1I | GRCGYC | 3 cut(s) | 104, 307, 1545 |
| Hin6I | GCGC | 1 cut(s) | 104 |
| HinP1I | GCGC | 1 cut(s) | 104 |
| HincII | GTYRAC | 5 cut(s) | 778, 1456, 2602, 2925, 3499 |
| HindII | GTYRAC | 5 cut(s) | 778, 1456, 2602, 2925, 3499 |
| HindIII | AAGCTT | 3 cut(s) | 251, 3104, 3283 |
| HpaI | GTTAAC | 1 cut(s) | 2925 |
| HpaII | CCGG | 4 cut(s) | 855, 1699, 3400, 3857 |
| HphI | GGTGA | 8 cut(s) | 199, 344, 1825, 2526, 2613, 3368, 3820, 3841 |
| Hpy99I | CGWCG | 2 cut(s) | 309, 457 |
| HpyCH4IV | ACGT | 4 cut(s) | 307, 1732, 2067, 3416 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 146, 301, 767, 809, 1205, 1255, 3620 |
| HpySE526I | ACGT | 4 cut(s) | 307, 1732, 2067, 3416 |
| Hsp92I | GRCGYC | 3 cut(s) | 104, 307, 1545 |
| HspAI | GCGC | 1 cut(s) | 104 |
| KasI | GGCGCC | 1 cut(s) | 103 |
| KpnI | GGTACC | 1 cut(s) | 3406 |
| Ksp22I | TGATCA | 2 cut(s) | 2476, 3682 |
| KspAI | GTTAAC | 1 cut(s) | 2925 |
| LmnI | GCTCC | 5 cut(s) | 1033, 2152, 2683, 3050, 3370 |
| MaeII | ACGT | 4 cut(s) | 307, 1732, 2067, 3416 |
| MfeI | CAATTG | 1 cut(s) | 2222 |
| MflI | RGATCY | 6 cut(s) | 1330, 2347, 2677, 2739, 3078, 3170 |
| MhlI | GDGCHC | 1 cut(s) | 3824 |
| MlsI | TGGCCA | 2 cut(s) | 149, 1317 |
| MluNI | TGGCCA | 2 cut(s) | 149, 1317 |
| Mly113I | GGCGCC | 1 cut(s) | 104 |
| MlyI | GAGTC | 7 cut(s) | 268, 496, 1451, 2402, 2441, 2743, 2899 |
| MmeI | TCCRAC | 2 cut(s) | 940, 3259 |
| Mox20I | TGGCCA | 2 cut(s) | 149, 1317 |
| MroXI | GAANNNNTTC | 3 cut(s) | 47, 635, 3107 |
| MscI | TGGCCA | 2 cut(s) | 149, 1317 |
| MslI | CAYNNNNRTG | 6 cut(s) | 834, 1227, 1269, 1539, 1950, 3765 |
| Msp20I | TGGCCA | 2 cut(s) | 149, 1317 |
| MspA1I | CMGCKG | 3 cut(s) | 109, 3626, 3839 |
| MspI | CCGG | 4 cut(s) | 855, 1699, 3400, 3857 |
| MspR9I | CCNGG | 6 cut(s) | 800, 856, 2675, 2775, 3148, 3363 |
| MunI | CAATTG | 1 cut(s) | 2222 |
| MvaI | CCWGG | 5 cut(s) | 800, 2675, 2775, 3148, 3363 |
| MvnI | CGCG | 1 cut(s) | 1452 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 146, 301, 767, 809, 1205, 1255, 3620 |
| NarI | GGCGCC | 1 cut(s) | 104 |
| NciI | CCSGG | 1 cut(s) | 856 |
| NdeI | CATATG | 1 cut(s) | 1266 |
| NlaIV | GGNNCC | 6 cut(s) | 105, 661, 1443, 2349, 3404, 3861 |
| NmeAIII | GCCGAG | 1 cut(s) | 1175 |
| NmuCI | GTSAC | 7 cut(s) | 1469, 1541, 2161, 2433, 2532, 3580, 3701 |
| NspI | RCATGY | 4 cut(s) | 1028, 1771, 3253, 3329 |
| PaeI | GCATGC | 2 cut(s) | 1028, 1771 |
| PaeR7I | CTCGAG | 1 cut(s) | 3255 |
| PagI | TCATGA | 4 cut(s) | 1524, 2353, 3679, 3745 |
| PaqCI | CACCTGC | 1 cut(s) | 2545 |
| PceI | AGGCCT | 1 cut(s) | 3313 |
| PciI | ACATGT | 1 cut(s) | 3249 |
| PdmI | GAANNNNTTC | 3 cut(s) | 47, 635, 3107 |
| PfeI | GAWTC | 7 cut(s) | 473, 643, 941, 1393, 1738, 2025, 2213 |
| PflFI | GACNNNGTC | 2 cut(s) | 274, 3586 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1245, 2276, 2680 |
| PfoI | TCCNGGA | 1 cut(s) | 3361 |
| PleI | GAGTC | 7 cut(s) | 267, 496, 1451, 2401, 2440, 2743, 2898 |
| PluTI | GGCGCC | 1 cut(s) | 107 |
| PpsI | GAGTC | 7 cut(s) | 267, 496, 1451, 2401, 2440, 2743, 2898 |
| PscI | ACATGT | 1 cut(s) | 3249 |
| Psp6I | CCWGG | 5 cut(s) | 798, 2673, 2773, 3146, 3361 |
| PspGI | CCWGG | 5 cut(s) | 798, 2673, 2773, 3146, 3361 |
| PspN4I | GGNNCC | 6 cut(s) | 105, 661, 1443, 2349, 3404, 3861 |
| PspPI | GGNCC | 4 cut(s) | 1442, 1844, 2950, 3753 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2837, 2869 |
| PstNI | CAGNNNCTG | 4 cut(s) | 758, 2028, 2680, 3626 |
| PsuI | RGATCY | 6 cut(s) | 1330, 2347, 2677, 2739, 3078, 3170 |
| PsyI | GACNNNGTC | 2 cut(s) | 274, 3586 |
| RseI | CAYNNNNRTG | 6 cut(s) | 834, 1227, 1269, 1539, 1950, 3765 |
| Sau96I | GGNCC | 4 cut(s) | 1442, 1844, 2950, 3753 |
| SchI | GAGTC | 7 cut(s) | 268, 496, 1451, 2402, 2441, 2743, 2899 |
| ScrFI | CCNGG | 6 cut(s) | 800, 856, 2675, 2775, 3148, 3363 |
| SduI | GDGCHC | 1 cut(s) | 3824 |
| SfcI | CTRYAG | 4 cut(s) | 582, 2327, 3082, 3690 |
| SfoI | GGCGCC | 1 cut(s) | 105 |
| Sfr274I | CTCGAG | 1 cut(s) | 3255 |
| SinI | GGWCC | 4 cut(s) | 1442, 1844, 2950, 3753 |
| SlaI | CTCGAG | 1 cut(s) | 3255 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 834, 1227, 1269, 1539, 1950, 3765 |
| SmlI | CTYRAG | 4 cut(s) | 254, 1504, 2687, 3255 |
| SmoI | CTYRAG | 4 cut(s) | 254, 1504, 2687, 3255 |
| SpeI | ACTAGT | 1 cut(s) | 563 |
| SphI | GCATGC | 2 cut(s) | 1028, 1771 |
| SseBI | AGGCCT | 1 cut(s) | 3313 |
| SsiI | CCGC | 5 cut(s) | 107, 233, 1811, 3624, 3837 |
| SspDI | GGCGCC | 1 cut(s) | 103 |
| SspI | AATATT | 1 cut(s) | 925 |
| StuI | AGGCCT | 1 cut(s) | 3313 |
| StyD4I | CCNGG | 6 cut(s) | 798, 854, 2673, 2773, 3146, 3361 |
| StyI | CCWWGG | 1 cut(s) | 804 |
| TaiI | ACGT | 4 cut(s) | 310, 1735, 2070, 3419 |
| TaqI | TCGA | 5 cut(s) | 173, 396, 2185, 2856, 3256 |
| TaqII | GACCGA | 2 cut(s) | 305, 3416 |
| TatI | WGTACW | 4 cut(s) | 1004, 1086, 2387, 3606 |
| TauI | GCSGC | 3 cut(s) | 109, 236, 3626 |
| TfiI | GAWTC | 7 cut(s) | 473, 643, 941, 1393, 1738, 2025, 2213 |
| TscAI | CASTG | 8 cut(s) | 376, 604, 1571, 2170, 2846, 3028, 3585, 3829 |
| TseFI | GTSAC | 7 cut(s) | 1469, 1541, 2161, 2433, 2532, 3580, 3701 |
| Tsp45I | GTSAC | 7 cut(s) | 1469, 1541, 2161, 2433, 2532, 3580, 3701 |
| TspGWI | ACGGA | 1 cut(s) | 2883 |
| TspRI | CASTG | 8 cut(s) | 376, 604, 1571, 2170, 2846, 3028, 3585, 3829 |
| Tth111I | GACNNNGTC | 2 cut(s) | 274, 3586 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1245, 2276, 2680 |
| VpaK11BI | GGWCC | 4 cut(s) | 1442, 1844, 2950, 3753 |
| XbaI | TCTAGA | 2 cut(s) | 1066, 2251 |
| XceI | RCATGY | 4 cut(s) | 1028, 1771, 3253, 3329 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 604, 885 |
| XhoI | CTCGAG | 1 cut(s) | 3255 |
| XmiI | GTMKAC | 5 cut(s) | 1116, 1858, 3161, 3209, 3590 |
| XmnI | GAANNNNTTC | 3 cut(s) | 47, 635, 3107 |
| ZraI | GACGTC | 1 cut(s) | 308 |