Rroxscaffold_1G00047670

Mitochondrial protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
67409221 .. 67415199
5979 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00047670.1

Sequence Viewer

Length: 483 bp
ATGTTAAAGATGGGCAATACAAACTGCTCCAAGATTTCGGGAATGGAAGATATTTGCATCGAGACTAATCTTGGTTACCGAGATGGCATTGAAGGATGTGAGACAAATTTCGATTTGCGTATTAACATATTGTCTTCAAGTGCTCTTGATAGACGAGGTTTCAACCAATATATTAGTGAAGAAAAGTGGACACTTACAAACGGGTCGTTGGATGTTGCTAAAGGAGAGTTTTGTCATTCCCTTTACAAGACACATAGCTTGGTATGCAGAGATAACTTGAGTGCAATGGGTGATACTTCTTCACACATATGGCTCCACAGCGAAGGCCATATAAGGAAGAAAGGTGATATGGAAAAGAAGTCCCTAATTTCCTTTTCCAATGATGAGTTTTCCGACCAGGGAGAAGATGGTCAAGAGTTATTCCACCGGGAGGGACATGGTGATGGGTTATTTGTTCGGGGGAGCTACATGCTCCAAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

160

Amino Acids

18.02

Weight (kDa)

5.3

Isoelectric Point (pI)

34.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 106
AfiI CCNNNNNNNGG 1 cut(s) 430
AgsI TTSAA 3 cut(s) 92, 138, 163
AjnI CCWGG 1 cut(s) 396
AluBI AGCT 2 cut(s) 258, 465
AluI AGCT 2 cut(s) 258, 465
Alw21I GWGCWC 1 cut(s) 145
Alw26I GTCTC 2 cut(s) 56, 95
AoxI GGCC 1 cut(s) 325
ApoI RAATTY 1 cut(s) 106
AsuC2I CCSGG 1 cut(s) 428
AsuHPI GGTGA 3 cut(s) 302, 356, 452
BbsI GAAGAC 1 cut(s) 126
Bbv12I GWGCWC 1 cut(s) 145
BccI CCATC 4 cut(s) 4, 77, 401, 437
BciT130I CCWGG 1 cut(s) 398
BcnI CCSGG 1 cut(s) 428
BcoDI GTCTC 2 cut(s) 56, 95
Bme1390I CCNGG 2 cut(s) 398, 428
BmiI GGNNCC 1 cut(s) 314
BmrFI CCNGG 2 cut(s) 398, 428
BmsI GCATC 1 cut(s) 66
BpiI GAAGAC 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 298
BpuMI CCSGG 1 cut(s) 428
BsaJI CCNNGG 1 cut(s) 397
Bsc4I CCNNNNNNNGG 1 cut(s) 430
Bse3DI GCAATG 1 cut(s) 291
BseBI CCWGG 1 cut(s) 398
BseDI CCNNGG 1 cut(s) 397
BseGI GGATG 2 cut(s) 101, 217
BseLI CCNNNNNNNGG 1 cut(s) 430
BseMI GCAATG 1 cut(s) 291
BshFI GGCC 1 cut(s) 327
BsiHKAI GWGCWC 1 cut(s) 145
BsiSI CCGG 1 cut(s) 427
BslFI GGGAC 2 cut(s) 346, 447
BslI CCNNNNNNNGG 1 cut(s) 430
BsmAI GTCTC 2 cut(s) 56, 95
BsmFI GGGAC 2 cut(s) 346, 447
BsnI GGCC 1 cut(s) 327
Bsp1286I GDGCHC 1 cut(s) 145
BspANI GGCC 1 cut(s) 327
BspLI GGNNCC 1 cut(s) 314
BsrDI GCAATG 1 cut(s) 291
BssECI CCNNGG 1 cut(s) 397
Bst2UI CCWGG 1 cut(s) 398
BstEII GGTNACC 1 cut(s) 74
BstF5I GGATG 2 cut(s) 101, 217
BstMAI GTCTC 2 cut(s) 56, 95
BstMWI GCNNNNNNNGC 1 cut(s) 264
BstNI CCWGG 1 cut(s) 398
BstNSI RCATGY 1 cut(s) 472
BstPI GGTNACC 1 cut(s) 74
BstSCI CCNGG 2 cut(s) 396, 426
BstV2I GAAGAC 1 cut(s) 126
BsuRI GGCC 1 cut(s) 327
BtsCI GGATG 2 cut(s) 101, 217
CviAII CATG 3 cut(s) 437, 469, 480
CviJI RGCY 4 cut(s) 258, 313, 327, 465
CviKI_1 RGCY 4 cut(s) 258, 313, 327, 465
Eco91I GGTNACC 1 cut(s) 74
EcoO65I GGTNACC 1 cut(s) 74
EcoRII CCWGG 1 cut(s) 396
FaeI CATG 3 cut(s) 440, 472, 483
FaqI GGGAC 2 cut(s) 346, 447
FatI CATG 3 cut(s) 436, 468, 479
FauNDI CATATG 1 cut(s) 308
FokI GGATG 2 cut(s) 108, 224
HaeIII GGCC 1 cut(s) 327
HapII CCGG 1 cut(s) 427
Hin1II CATG 3 cut(s) 440, 472, 483
HpaII CCGG 1 cut(s) 427
HphI GGTGA 3 cut(s) 302, 356, 452
Hpy166II GTNNAC 1 cut(s) 189
Hpy188I TCNGA 1 cut(s) 394
Hpy188III TCNNGA 4 cut(s) 39, 61, 146, 413
Hpy8I GTNNAC 1 cut(s) 189
HpyAV CCTTC 2 cut(s) 86, 317
HpyCH4V TGCA 3 cut(s) 57, 267, 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 264
Hsp92II CATG 3 cut(s) 440, 472, 483
LmnI GCTCC 4 cut(s) 32, 318, 462, 477
LpnPI CCDG 3 cut(s) 383, 410, 440
LweI GCATC 1 cut(s) 66
MaeIII GTNAC 1 cut(s) 74
MboII GAAGA 6 cut(s) 59, 126, 191, 291, 349, 416
MhlI GDGCHC 1 cut(s) 145
MluCI AATT 2 cut(s) 106, 366
MmeI TCCRAC 2 cut(s) 189, 417
MnlI CCTC 2 cut(s) 149, 424
MseI TTAA 2 cut(s) 5, 123
MslI CAYNNNNRTG 2 cut(s) 307, 441
MspI CCGG 1 cut(s) 427
MspR9I CCNGG 2 cut(s) 398, 428
MvaI CCWGG 1 cut(s) 398
MwoI GCNNNNNNNGC 1 cut(s) 264
NciI CCSGG 1 cut(s) 428
NdeI CATATG 1 cut(s) 308
NlaIII CATG 3 cut(s) 440, 472, 483
NlaIV GGNNCC 1 cut(s) 314
NspI RCATGY 1 cut(s) 472
Psp6I CCWGG 1 cut(s) 396
PspEI GGTNACC 1 cut(s) 74
PspGI CCWGG 1 cut(s) 396
PspN4I GGNNCC 1 cut(s) 314
RseI CAYNNNNRTG 2 cut(s) 307, 441
SaqAI TTAA 2 cut(s) 5, 123
ScrFI CCNGG 2 cut(s) 398, 428
SduI GDGCHC 1 cut(s) 145
SetI ASST 4 cut(s) 160, 260, 346, 467
SfaNI GCATC 1 cut(s) 66
SmiMI CAYNNNNRTG 2 cut(s) 307, 441
SmlI CTYRAG 1 cut(s) 277
SmoI CTYRAG 1 cut(s) 277
Sse9I AATT 2 cut(s) 106, 366
StyD4I CCNGG 2 cut(s) 396, 426
TaqI TCGA 2 cut(s) 60, 111
TasI AATT 2 cut(s) 106, 366
Tru1I TTAA 2 cut(s) 5, 123
Tru9I TTAA 2 cut(s) 5, 123
XapI RAATTY 1 cut(s) 106
XceI RCATGY 1 cut(s) 472
XcmI CCANNNNNNNNNTGG 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.