FvH4_4g14721

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000278
Physical Location & Seq
Reverse (-)
18387005 .. 18391073
4069 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g14721.t1

Sequence Viewer

Length: 3300 bp
ATGGAAGGTTCAAGGAGTACAATGGTTCAACTCAACCACTCAAATTGGATTACATGGAAGCCACGAATGGAGGACATACTCTATTGCAAAGATTTGCATGAGCCCATCGAAGGAGTTGATGCTAAGCCGGAAGGGACTTCAGATGCTAATTGGACGAAGATGAATCGTAAGGCAATCGGTCATATCCGAGAGTGGATGGATGATAGTGTATTCCACCATGTGGCAAATGAGACTGATGCGCATGAGTTGTGGACAAAGTTGGAGTCGTTATTAGAGAAGAAGACCGCCGTCAAGAAAGCCTTTCTAATTAAAGAGCTTGCTAACATGAAGTATCGTGAAGGCAGACAAGGAGAAAATCCTCTAGCTCCAACAATAGCCAAGTCTTTGTGGCGGAGAATAGAGGTAGGAGCAAGAGTAAAGGACCTAGAGGCCATGGAAGGAGTGCAAGCCGATCCAGAACAAGGTTCAATGGAAAGTGCCATCATTGTGGTCGTTGATTCCGGAGCCTCTTTCCATGCCACTCCAAATAAGGAGTTTTTCTTGACATACAAAGGTGGTGAATTTGGGATTGTAAAGATGGGCAATGAAGGCTACTCCAAGATTGCAGGAATTGGAGATGTCTGCTTTGAGACCGATTTGGGCAACAAGCTGATGTTGAAAGATGTTCGACATGTTTCGGGCCTACGTCTCAATTTGATGTCAACTGGCGTGCTTGATCGAGAAGGTTTTCATCATCACAGAGGAGATCAAAAGTGGAGGCTTACCAGAGGATCACTAGTGGTGGCTAGAGGGAAGTTGTGTTGCACCCTCTACAAGACATATGGCAAGATATACAAAGGGGAGTTGAATATCATGGATGACTCTTCTCCAAGTCTATGGCACAAGCGGTTAGGCCACGTAAGTGAGAAGGGATTGCAAGTTCTGGCAAAGAAGTCTCTTATTCCGTTTCCCAAAGGTACCTCACTTGAATCTTGTGATCATTGTTTATTTGGTAAGCAACATAAGGTTAGTTTTGCTAATACATTTACAAAGAAAGAGAATGTTTTAGACCTAGTACACTCGGATGTATGTGGTCCTATGGAAGTTGATTCACTAGGTCATAGCAAATATTTTGTCACTTTTATCGATGATGCTTCACGAAAGGTTTGGGTGTATTTGTTAAAATCAAAAGACCAGGTGTTCCAAACCTTCAAGGAGTTCCATGCCATGGTTGAGAGGGAGACGGGACGAACCCTCAAGTGTCTCCGCAGTGATAATGGTGGAGAGTACACTTCGAACAAGTTCAACGAGTTCAGAGGTTATTGTTCGAAGCATGGCATTAGACACATAAAGACAGTTCCTGGCACCCCACAACATAATGGTGTAGCAGAGAGGATGAACCGCGCCATTTTGGAAAAAATGAGAAGCATGCTAAAGACGGCTAACCTGGCAAAAGAGTTTTGGGGCGCAGCAGTGACAACCGCTTGTTACCTCATCAACCGAATACCATGTGTACCGTTGGGCTTGGAGACTCCAGAGAGTGTGTGGACCGGTAGAAGTGCTTCATATTCTCACTTGAAGGTATTTGGGTGCAAAGCATTTGCACATGTTCCAAAGGAGAAAAGATTGAAGCTAGATGACAAGGCCGTGCCGTGCATCTTTCTTGGGTACGGTAATGAAGAGATGGGCTACCAGTTGTGGAATCCAATAACCAAGAAGTTATTCAGAAGCAGAGATGTGGTGTTCCATGAGGATCAGACTGTTGCGAATTTTGACAAGAACATACTAGAAAATGCAGAGCGCCTCACTTATGACTCGTCTCCGCTCCAAGAAGAGTCTAACAAACCTCAAGAAATGGTTAATGAAGATGTCCCTGATACGGCAGAACCAGAAGCTGCAGGTGTTGCAAATGATGACCAGAAGACTCAGGTTCAGGATGATCATGACCAGGGGGAGCCTGATCATGAAGATGATAGAGATAATCCATATTCCAAATACATTCTGTTGACTGGTGATGGAGAGCCTGAATGCTTTGAGGAGGTGAAGACTCATGCAGACGGCGACAAGTGGATATTAGCTATGAAGTCTGAGATGGAGTCCTTGTTGAAAAATGGCACCTATGAGTTGGTGGAGCTTCCTAAAGGCAGAAAAGCACTCAAAAACAAATGGGTGTTCAAGTTGAAGAGGGAGGAGAATGAACAGTTGACAAAGTTCAAGGCTCGCTTGGTTGTCAAAGGTTTCGGGCAGAAGGAAGGAGTAGATTTTGATGAGATCTTCTCACCAATTGTCAAAATGACATCTATCAGAGTTATTTTGGGCATGGCAGCTAGCATGGATCTTGAGGTGGAGCAATTAGATGTAAAAACGGCATTCCTACATGGTGATTTGGAGGAAGAAATATACATGGAGCAACCGGAAGGTTTTGAGGTCGAGGGCAAGGAGCACATGGTTTGCAAGCTAAAGAAAAGTTTGTATGAATTGAAGCAAGCACCAAGGCAATGGTACAAGAAGTTTGACTCATTCATGGTGGGTCATGGATACAAAAGAACTGATGCAGACCCATGTGTGTACATTCAACGGTTCACTGGAGGTAAATTTATAATTTTGTTGCTTTATGTTGATGATATGTTGATAGTGGGGCAAGACATTTCTATGATCTGCAAGTTGAAGGCAGATTTATCAAAGTCTTTTGATATGAAAGACTTAGGTCCAGCTAAGCAGATTTTGGGCATGGAGATTACCCGTGATAGGAAGGCAAATAAATTATGGTTGTCACAGGAGAGGTATGTTGAATGGGTGCTTGAAAGGTTCAACATGAAAGAAGCCAAGTCAGTGAGCTCACCTCTAGGTAATCACTTTAAGTTAAGCAGATTATTATGCCCAACTACACAAGAGGAGAAAGACAAGATGGCAGGTATCCCTTACTCATCAGCTGTTGGTAGTCTTATGTATGCCATGTCCAAGTTACAGAAGTGTGTTGCCTTATCCACCACTGAGTCCGAGTACATAGCGGCAAACGAAGCAGGCAAGGAAATGATATGGTTGCAAAGGTTCATTCAGGAGTTGGGTGTGAAGCAAGAAAGGTATGTGGTGTATTGTGATTGTCAGAGTGCAATTCACTTGAGTAAAAATTCAGTTTATCACCCTCACACTAAGCACATTGATCTACGTTATCATTGGATACGAGATGTAGTGTCAAAGAAGTTTTTGCAGTTGAGGAAAATTCACACCAACAAGAATACTTCAGATATGTTGACTAAGGTTGTGCCACAACAGAAGTTGGAGTATTGCAGCAAGTCCGCTGGGATGGACTTCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve zf-CCHC

Protein Analysis

1100

Amino Acids

125.54

Weight (kDa)

7.88

Isoelectric Point (pI)

34.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 23 - 114 3e-16 gag-polypeptide of LTR copia-type
Pol_BBD PF22936 164 - 243 2.3e-19 Pol polyprotein, beta-barrel domain
gag_pre-integrs PF13976 286 - 333 2.9e-14 GAG-pre-integrase domain
rve PF00665 351 - 450 1e-10 Integrase core domain
SH3_retrovirus PF25597 524 - 580 1.5e-24 Retroviral polymerase SH3-like domain
RVT_2 PF07727 697 - 942 1.1e-77 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2579
AarI CACCTGC 1 cut(s) 1868
Acc16I TGCGCA 1 cut(s) 240
Acc36I ACCTGC 2 cut(s) 1868, 2882
Acc65I GGTACC 1 cut(s) 956
AccB1I GGYRCC 3 cut(s) 956, 1343, 2093
AccB7I CCANNNNNTGG 2 cut(s) 220, 1207
AccBSI CCGCTC 1 cut(s) 1804
AccII CGCG 1 cut(s) 1383
AccIII TCCGGA 1 cut(s) 500
AciI CCGC 9 cut(s) 285, 391, 886, 1246, 1381, 1461, 1802, 2990, 3279
AclWI GGATC 4 cut(s) 446, 778, 1740, 2322
AcsI RAATTY 5 cut(s) 560, 1747, 2573, 3109, 3201
AcuI CTGAAG 2 cut(s) 123, 3207
AdeI CACNNNGTG 1 cut(s) 220
AfaI GTAC 9 cut(s) 19, 958, 1056, 1268, 1494, 1649, 2483, 2549, 2984
AfiI CCNNNNNNNGG 6 cut(s) 110, 220, 461, 1207, 1858, 2727
AflIII ACRYGT 2 cut(s) 670, 1585
AgeI ACCGGT 1 cut(s) 1529
AhlI ACTAGT 1 cut(s) 775
AjnI CCWGG 4 cut(s) 1173, 1339, 1425, 1926
AjuI GAANNNNNNNTTGG 2 cut(s) 1685, 1717
AleI CACNNNNGTG 1 cut(s) 900
AloI GAACNNNNNNTCC 2 cut(s) 903, 935
Alw21I GWGCWC 2 cut(s) 2424, 2819
Alw26I GTCTC 8 cut(s) 224, 623, 692, 939, 1214, 1247, 1502, 1803
AlwI GGATC 4 cut(s) 446, 778, 1740, 2322
AlwNI CAGNNNCTG 2 cut(s) 1340, 1874
Aor13HI TCCGGA 1 cut(s) 500
AoxI GGCC 4 cut(s) 429, 679, 892, 1623
ApeKI GCWGC 4 cut(s) 1448, 1874, 2303, 3270
ApoI RAATTY 5 cut(s) 560, 1747, 2573, 3109, 3201
ArsI GACNNNNNNTTYG 4 cut(s) 248, 280, 1098, 1130
AsiGI ACCGGT 1 cut(s) 1529
Asp700I GAANNNNTTC 4 cut(s) 726, 1280, 1540, 1700
Asp718I GGTACC 1 cut(s) 956
AspLEI GCGC 4 cut(s) 241, 1385, 1448, 1782
AspS9I GGNCC 5 cut(s) 421, 679, 1073, 1527, 2687
AsuHPI GGTGA 7 cut(s) 569, 2003, 2032, 2250, 2372, 2811, 3113
AsuII TTCGAA 2 cut(s) 1274, 1307
AsuNHI GCTAGC 1 cut(s) 2306
AvaII GGWCC 4 cut(s) 421, 1073, 1527, 2687
BanI GGYRCC 3 cut(s) 956, 1343, 2093
BanII GRGCYC 2 cut(s) 105, 2819
BarI GAAGNNNNNNTAC 2 cut(s) 1525, 1557
BbsI GAAGAC 3 cut(s) 287, 1907, 2030
Bbv12I GWGCWC 2 cut(s) 2424, 2819
BbvI GCAGC 4 cut(s) 1460, 1861, 2315, 3282
BccI CCATC 9 cut(s) 113, 190, 488, 571, 1657, 1988, 2065, 2881, 3280
BceAI ACGGC 7 cut(s) 272, 1434, 1610, 1615, 1875, 2053, 2361
BciT130I CCWGG 4 cut(s) 1175, 1341, 1427, 1928
BciVI GTATCC 3 cut(s) 2510, 2906, 3153
BclI TGATCA 3 cut(s) 976, 1918, 1939
BcoDI GTCTC 8 cut(s) 224, 623, 692, 939, 1214, 1247, 1502, 1803
BcuI ACTAGT 1 cut(s) 775
BfmI CTRYAG 1 cut(s) 1875
BfoI RGCGCY 1 cut(s) 1783
BfuAI ACCTGC 2 cut(s) 1868, 2882
BfuI GTATCC 3 cut(s) 2510, 2906, 3153
BglII AGATCT 1 cut(s) 2250
BisI GCNGC 5 cut(s) 1449, 1875, 2304, 2991, 3271
BlpI GCTNAGC 2 cut(s) 123, 2694
BlsI GCNGC 5 cut(s) 1450, 1876, 2305, 2992, 3272
Bme1390I CCNGG 4 cut(s) 1175, 1341, 1427, 1928
Bme18I GGWCC 4 cut(s) 421, 1073, 1527, 2687
BmgT120I GGNCC 5 cut(s) 421, 679, 1073, 1527, 2687
BmiI GGNNCC 5 cut(s) 505, 958, 1345, 1935, 2095
BmrFI CCNGG 4 cut(s) 1175, 1341, 1427, 1928
BmsI GCATC 6 cut(s) 109, 133, 226, 1120, 1644, 2521
BmtI GCTAGC 1 cut(s) 2310
BoxI GACNNNNGTC 2 cut(s) 287, 2685
BpiI GAAGAC 3 cut(s) 287, 1907, 2030
BplI GAGNNNNNCTC 4 cut(s) 2240, 2272, 2806, 2838
BpmI CTGGAG 2 cut(s) 1497, 2586
Bpu1102I GCTNAGC 2 cut(s) 123, 2694
Bpu14I TTCGAA 2 cut(s) 1274, 1307
BpuEI CTTGAG 4 cut(s) 1220, 1812, 2339, 3121
Bsa29I ATCGAT 1 cut(s) 1125
BsaAI YACGTR 1 cut(s) 898
BsaI GGTCTC 1 cut(s) 623
BsaJI CCNNGG 4 cut(s) 432, 1206, 1927, 2471
BsaWI WCCGGW 3 cut(s) 500, 1529, 2392
BsaXI ACNNNNNCTCC 4 cut(s) 399, 429, 2066, 2096
Bsc4I CCNNNNNNNGG 6 cut(s) 110, 220, 461, 1207, 1858, 2727
Bse118I RCCGGY 1 cut(s) 1529
Bse1I ACTGG 4 cut(s) 709, 1672, 1993, 2569
Bse3DI GCAATG 2 cut(s) 589, 2483
BseAI TCCGGA 1 cut(s) 500
BseBI CCWGG 4 cut(s) 1175, 1341, 1427, 1928
BseCI ATCGAT 1 cut(s) 1125
BseDI CCNNGG 4 cut(s) 432, 1206, 1927, 2471
BseGI GGATG 7 cut(s) 201, 205, 862, 1069, 1380, 1921, 3291
BseLI CCNNNNNNNGG 6 cut(s) 110, 220, 461, 1207, 1858, 2727
BseMI GCAATG 2 cut(s) 589, 2483
BseMII CTCAG 3 cut(s) 1919, 2058, 2964
BseNI ACTGG 4 cut(s) 709, 1672, 1993, 2569
BseRI GAGGAG 4 cut(s) 756, 2030, 2183, 2888
BseXI GCAGC 4 cut(s) 1460, 1861, 2315, 3282
BseYI CCCAGC 1 cut(s) 3281
Bsh1236I CGCG 1 cut(s) 1383
BshFI GGCC 4 cut(s) 431, 681, 894, 1625
BshNI GGYRCC 3 cut(s) 956, 1343, 2093
BshTI ACCGGT 1 cut(s) 1529
BshVI ATCGAT 1 cut(s) 1125
BsiHKAI GWGCWC 2 cut(s) 2424, 2819
BsiSI CCGG 4 cut(s) 128, 501, 1530, 2393
BslFI GGGAC 3 cut(s) 148, 1239, 1835
BslI CCNNNNNNNGG 6 cut(s) 110, 220, 461, 1207, 1858, 2727
BsmAI GTCTC 8 cut(s) 224, 623, 692, 939, 1214, 1247, 1502, 1803
BsmBI CGTCTC 3 cut(s) 692, 1214, 1803
BsmFI GGGAC 3 cut(s) 148, 1239, 1835
BsmI GAATGC 2 cut(s) 2012, 2348
BsnI GGCC 4 cut(s) 431, 681, 894, 1625
Bso31I GGTCTC 1 cut(s) 623
Bsp119I TTCGAA 2 cut(s) 1274, 1307
Bsp1286I GDGCHC 3 cut(s) 105, 2424, 2819
Bsp13I TCCGGA 1 cut(s) 500
Bsp1407I TGTACA 1 cut(s) 2547
Bsp1720I GCTNAGC 2 cut(s) 123, 2694
Bsp19I CCATGG 2 cut(s) 432, 1206
BspACI CCGC 9 cut(s) 285, 391, 886, 1246, 1381, 1461, 1802, 2990, 3279
BspANI GGCC 4 cut(s) 431, 681, 894, 1625
BspCNI CTCAG 3 cut(s) 1918, 2059, 2965
BspDI ATCGAT 1 cut(s) 1125
BspEI TCCGGA 1 cut(s) 500
BspFNI CGCG 1 cut(s) 1383
BspHI TCATGA 2 cut(s) 1921, 1942
BspLI GGNNCC 5 cut(s) 505, 958, 1345, 1935, 2095
BspMAI CTGCAG 1 cut(s) 1879
BspMI ACCTGC 2 cut(s) 1868, 2882
BspOI GCTAGC 1 cut(s) 2310
BspPI GGATC 4 cut(s) 446, 778, 1740, 2322
BspT104I TTCGAA 2 cut(s) 1274, 1307
BspT107I GGYRCC 3 cut(s) 956, 1343, 2093
BspTNI GGTCTC 1 cut(s) 623
BsrBI CCGCTC 1 cut(s) 1804
BsrDI GCAATG 2 cut(s) 589, 2483
BsrFI RCCGGY 1 cut(s) 1529
BsrGI TGTACA 1 cut(s) 2547
BsrI ACTGG 4 cut(s) 709, 1672, 1993, 2569
BssAI RCCGGY 1 cut(s) 1529
BssECI CCNNGG 4 cut(s) 432, 1206, 1927, 2471
BssT1I CCWWGG 3 cut(s) 432, 1206, 2471
Bst2UI CCWGG 4 cut(s) 1175, 1341, 1427, 1928
Bst4CI ACNGT 6 cut(s) 1336, 1497, 1652, 1741, 2181, 2559
Bst6I CTCTTC 4 cut(s) 868, 1653, 1806, 2156
BstAPI GCANNNNNTGC 1 cut(s) 1883
BstAUI TGTACA 1 cut(s) 2547
BstBAI YACGTR 1 cut(s) 898
BstBI TTCGAA 2 cut(s) 1274, 1307
BstC8I GCNNGC 9 cut(s) 318, 447, 710, 1409, 2200, 2308, 2435, 2466, 3004
BstDEI CTNAG 8 cut(s) 123, 1905, 2067, 2683, 2694, 2973, 3132, 3237
BstDSI CCRYGG 2 cut(s) 432, 1206
BstF5I GGATG 7 cut(s) 201, 205, 862, 1069, 1380, 1921, 3291
BstFNI CGCG 1 cut(s) 1383
BstH2I RGCGCY 1 cut(s) 1783
BstHHI GCGC 4 cut(s) 241, 1385, 1448, 1782
BstMAI GTCTC 8 cut(s) 224, 623, 692, 939, 1214, 1247, 1502, 1803
BstMWI GCNNNNNNNGC 4 cut(s) 588, 1427, 1883, 2999
BstNI CCWGG 4 cut(s) 1175, 1341, 1427, 1928
BstNSI RCATGY 3 cut(s) 674, 1411, 1589
BstPAI GACNNNNGTC 2 cut(s) 287, 2685
BstSCI CCNGG 4 cut(s) 1173, 1339, 1425, 1926
BstSFI CTRYAG 1 cut(s) 1875
BstUI CGCG 1 cut(s) 1383
BstV1I GCAGC 4 cut(s) 1460, 1861, 2315, 3282
BstV2I GAAGAC 3 cut(s) 287, 1907, 2030
BstX2I RGATCY 2 cut(s) 2250, 2314
BstXI CCANNNNNNTGG 3 cut(s) 487, 876, 2478
BstYI RGATCY 2 cut(s) 2250, 2314
Bsu15I ATCGAT 1 cut(s) 1125
BsuI GTATCC 3 cut(s) 2510, 2906, 3153
BsuRI GGCC 4 cut(s) 431, 681, 894, 1625
BsuTUI ATCGAT 1 cut(s) 1125
BtgI CCRYGG 2 cut(s) 432, 1206
BtsCI GGATG 7 cut(s) 201, 205, 862, 1069, 1380, 1921, 3291
BtsI GCAGTG 2 cut(s) 1255, 1458
BtsIMutI CAGTG 5 cut(s) 1255, 1458, 2562, 2817, 2970
BveI ACCTGC 2 cut(s) 1868, 2882
Cac8I GCNNGC 9 cut(s) 318, 447, 710, 1409, 2200, 2308, 2435, 2466, 3004
CaiI CAGNNNCTG 2 cut(s) 1340, 1874
CciI TCATGA 2 cut(s) 1921, 1942
CfoI GCGC 4 cut(s) 241, 1385, 1448, 1782
Cfr10I RCCGGY 1 cut(s) 1529
Cfr13I GGNCC 5 cut(s) 421, 679, 1073, 1527, 2687
ClaI ATCGAT 1 cut(s) 1125
CsiI ACCWGGT 1 cut(s) 1173
Csp6I GTAC 9 cut(s) 18, 957, 1055, 1267, 1493, 1648, 2482, 2548, 2983
CspAI ACCGGT 1 cut(s) 1529
CspCI CAANNNNNGTGG 2 cut(s) 26, 61
CviQI GTAC 9 cut(s) 18, 957, 1055, 1267, 1493, 1648, 2482, 2548, 2983
DdeI CTNAG 8 cut(s) 123, 1905, 2067, 2683, 2694, 2973, 3132, 3237
DraIII CACNNNGTG 1 cut(s) 220
Eam1104I CTCTTC 4 cut(s) 868, 1653, 1806, 2156
EarI CTCTTC 4 cut(s) 868, 1653, 1806, 2156
EciI GGCGGA 1 cut(s) 406
Ecl136II GAGCTC 1 cut(s) 2817
Eco130I CCWWGG 3 cut(s) 432, 1206, 2471
Eco24I GRGCYC 2 cut(s) 105, 2819
Eco31I GGTCTC 1 cut(s) 623
Eco47I GGWCC 4 cut(s) 421, 1073, 1527, 2687
Eco53kI GAGCTC 1 cut(s) 2817
Eco57I CTGAAG 2 cut(s) 123, 3207
EcoICRI GAGCTC 1 cut(s) 2817
EcoO109I RGGNCCY 1 cut(s) 421
EcoRII CCWGG 4 cut(s) 1173, 1339, 1425, 1926
EcoT14I CCWWGG 3 cut(s) 432, 1206, 2471
EcoT38I GRGCYC 2 cut(s) 105, 2819
ErhI CCWWGG 3 cut(s) 432, 1206, 2471
Esp3I CGTCTC 3 cut(s) 692, 1214, 1803
FalI AAGNNNNNCTT 4 cut(s) 284, 316, 2186, 2218
FaqI GGGAC 3 cut(s) 148, 1239, 1835
FauNDI CATATG 1 cut(s) 820
FbaI TGATCA 3 cut(s) 976, 1918, 1939
Fnu4HI GCNGC 5 cut(s) 1449, 1875, 2304, 2991, 3271
FokI GGATG 6 cut(s) 208, 212, 869, 1076, 1387, 1928
FriOI GRGCYC 2 cut(s) 105, 2819
Fsp4HI GCNGC 5 cut(s) 1449, 1875, 2304, 2991, 3271
FspAI RTGCGCAY 1 cut(s) 240
FspI TGCGCA 1 cut(s) 240
GlaI GCGC 4 cut(s) 240, 1384, 1447, 1781
GluI GCNGC 5 cut(s) 1449, 1875, 2304, 2991, 3271
GsaI CCCAGC 1 cut(s) 3285
GsuI CTGGAG 2 cut(s) 1497, 2586
HaeII RGCGCY 1 cut(s) 1783
HaeIII GGCC 4 cut(s) 431, 681, 894, 1625
HapII CCGG 4 cut(s) 128, 501, 1530, 2393
HhaI GCGC 4 cut(s) 241, 1385, 1448, 1782
Hin6I GCGC 4 cut(s) 239, 1383, 1446, 1780
HinP1I GCGC 4 cut(s) 239, 1383, 1446, 1780
HincII GTYRAC 4 cut(s) 702, 1986, 2184, 3234
HindII GTYRAC 4 cut(s) 702, 1986, 2184, 3234
HpaII CCGG 4 cut(s) 128, 501, 1530, 2393
HphI GGTGA 7 cut(s) 569, 2003, 2032, 2250, 2372, 2811, 3113
HpyCH4III ACNGT 6 cut(s) 1336, 1497, 1652, 1741, 2181, 2559
HpyCH4IV ACGT 3 cut(s) 685, 897, 3148
HpyF10VI GCNNNNNNNGC 4 cut(s) 588, 1427, 1883, 2999
HpyF3I CTNAG 8 cut(s) 123, 1905, 2067, 2683, 2694, 2973, 3132, 3237
HpySE526I ACGT 3 cut(s) 685, 897, 3148
HspAI GCGC 4 cut(s) 239, 1383, 1446, 1780
Kpn2I TCCGGA 1 cut(s) 500
KpnI GGTACC 1 cut(s) 960
Ksp22I TGATCA 3 cut(s) 976, 1918, 1939
LmnI GCTCC 9 cut(s) 370, 407, 503, 1809, 1933, 2110, 2326, 2386, 2419
Lsp1109I GCAGC 4 cut(s) 1460, 1861, 2315, 3282
LweI GCATC 6 cut(s) 109, 133, 226, 1120, 1644, 2521
MabI ACCWGGT 1 cut(s) 1173
MaeII ACGT 3 cut(s) 685, 897, 3148
MaeIII GTNAC 5 cut(s) 1114, 1453, 1466, 2751, 2943
MbiI CCGCTC 1 cut(s) 1804
MfeI CAATTG 1 cut(s) 2262
MflI RGATCY 2 cut(s) 2250, 2314
MhlI GDGCHC 3 cut(s) 105, 2424, 2819
MmeI TCCRAC 3 cut(s) 240, 392, 3240
MroI TCCGGA 1 cut(s) 500
MroXI GAANNNNTTC 4 cut(s) 726, 1280, 1540, 1700
MseI TTAA 5 cut(s) 309, 1160, 1839, 2838, 2843
MslI CAYNNNNRTG 6 cut(s) 485, 900, 1062, 1359, 1947, 2630
MspA1I CMGCKG 2 cut(s) 2912, 3281
MspI CCGG 4 cut(s) 128, 501, 1530, 2393
MspR9I CCNGG 4 cut(s) 1175, 1341, 1427, 1928
MunI CAATTG 1 cut(s) 2262
Mva1269I GAATGC 2 cut(s) 2012, 2348
MvaI CCWGG 4 cut(s) 1175, 1341, 1427, 1928
MvnI CGCG 1 cut(s) 1383
MwoI GCNNNNNNNGC 4 cut(s) 588, 1427, 1883, 2999
NcoI CCATGG 2 cut(s) 432, 1206
NdeI CATATG 1 cut(s) 820
NheI GCTAGC 1 cut(s) 2306
NlaIV GGNNCC 5 cut(s) 505, 958, 1345, 1935, 2095
NmuCI GTSAC 3 cut(s) 1114, 1453, 2751
NsbI TGCGCA 1 cut(s) 240
NspI RCATGY 3 cut(s) 674, 1411, 1589
NspV TTCGAA 2 cut(s) 1274, 1307
OliI CACNNNNGTG 1 cut(s) 900
PaeI GCATGC 1 cut(s) 1411
PagI TCATGA 2 cut(s) 1921, 1942
PaqCI CACCTGC 1 cut(s) 1868
PciI ACATGT 2 cut(s) 670, 1585
PctI GAATGC 2 cut(s) 2012, 2348
PdmI GAANNNNTTC 4 cut(s) 726, 1280, 1540, 1700
PfeI GAWTC 5 cut(s) 163, 497, 968, 1088, 1681
PflMI CCANNNNNTGG 2 cut(s) 220, 1207
PinAI ACCGGT 1 cut(s) 1529
PkrI GCNGC 5 cut(s) 1450, 1876, 2305, 2992, 3272
Ppu21I YACGTR 1 cut(s) 898
PpuMI RGGWCCY 1 cut(s) 421
PscI ACATGT 2 cut(s) 670, 1585
PshAI GACNNNNGTC 2 cut(s) 287, 2685
PsiI TTATAA 1 cut(s) 2579
Psp124BI GAGCTC 1 cut(s) 2819
Psp5II RGGWCCY 1 cut(s) 421
Psp6I CCWGG 4 cut(s) 1173, 1339, 1425, 1926
PspFI CCCAGC 1 cut(s) 3281
PspGI CCWGG 4 cut(s) 1173, 1339, 1425, 1926
PspN4I GGNNCC 5 cut(s) 505, 958, 1345, 1935, 2095
PspPI GGNCC 5 cut(s) 421, 679, 1073, 1527, 2687
PspPPI RGGWCCY 1 cut(s) 421
PstI CTGCAG 1 cut(s) 1879
PstNI CAGNNNCTG 2 cut(s) 1340, 1874
PsuI RGATCY 2 cut(s) 2250, 2314
PvuII CAGCTG 1 cut(s) 2912
RsaI GTAC 9 cut(s) 19, 958, 1056, 1268, 1494, 1649, 2483, 2549, 2984
RsaNI GTAC 9 cut(s) 18, 957, 1055, 1267, 1493, 1648, 2482, 2548, 2983
RseI CAYNNNNRTG 6 cut(s) 485, 900, 1062, 1359, 1947, 2630
SacI GAGCTC 1 cut(s) 2819
SaqAI TTAA 5 cut(s) 309, 1160, 1839, 2838, 2843
SatI GCNGC 5 cut(s) 1449, 1875, 2304, 2991, 3271
Sau96I GGNCC 5 cut(s) 421, 679, 1073, 1527, 2687
ScrFI CCNGG 4 cut(s) 1175, 1341, 1427, 1928
SduI GDGCHC 3 cut(s) 105, 2424, 2819
SexAI ACCWGGT 1 cut(s) 1173
SfaNI GCATC 6 cut(s) 109, 133, 226, 1120, 1644, 2521
SfcI CTRYAG 1 cut(s) 1875
SfuI TTCGAA 2 cut(s) 1274, 1307
SinI GGWCC 4 cut(s) 421, 1073, 1527, 2687
SmiMI CAYNNNNRTG 6 cut(s) 485, 900, 1062, 1359, 1947, 2630
SmlI CTYRAG 4 cut(s) 1235, 1827, 2318, 3100
SmoI CTYRAG 4 cut(s) 1235, 1827, 2318, 3100
SpeI ACTAGT 1 cut(s) 775
SphI GCATGC 1 cut(s) 1411
SsiI CCGC 9 cut(s) 285, 391, 886, 1246, 1381, 1461, 1802, 2990, 3279
SspI AATATT 1 cut(s) 1109
SstI GAGCTC 1 cut(s) 2819
StyD4I CCNGG 4 cut(s) 1173, 1339, 1425, 1926
StyI CCWWGG 3 cut(s) 432, 1206, 2471
TaaI ACNGT 6 cut(s) 1336, 1497, 1652, 1741, 2181, 2559
TaiI ACGT 3 cut(s) 688, 900, 3151
TaqI TCGA 7 cut(s) 108, 667, 718, 1125, 1274, 1307, 2409
TaqII GACCGA 2 cut(s) 167, 647
TatI WGTACW 5 cut(s) 17, 1054, 1266, 2547, 2982
TauI GCSGC 1 cut(s) 2993
TfiI GAWTC 5 cut(s) 163, 497, 968, 1088, 1681
Tru1I TTAA 5 cut(s) 309, 1160, 1839, 2838, 2843
Tru9I TTAA 5 cut(s) 309, 1160, 1839, 2838, 2843
TscAI CASTG 5 cut(s) 1255, 1458, 2569, 2817, 2977
TseFI GTSAC 3 cut(s) 1114, 1453, 2751
TseI GCWGC 4 cut(s) 1448, 1874, 2303, 3270
Tsp45I GTSAC 3 cut(s) 1114, 1453, 2751
TspGWI ACGGA 1 cut(s) 933
TspRI CASTG 5 cut(s) 1255, 1458, 2569, 2817, 2977
Van91I CCANNNNNTGG 2 cut(s) 220, 1207
VpaK11BI GGWCC 4 cut(s) 421, 1073, 1527, 2687
XapI RAATTY 5 cut(s) 560, 1747, 2573, 3109, 3201
XceI RCATGY 3 cut(s) 674, 1411, 1589
XcmI CCANNNNNNNNNTGG 1 cut(s) 1521
XmnI GAANNNNTTC 4 cut(s) 726, 1280, 1540, 1700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.