Mitochondrial protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 87 - 228 | 5.3e-23 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1110 |
| AatII | GACGTC | 1 cut(s) | 1430 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 92 |
| AciI | CCGC | 3 cut(s) | 335, 430, 1210 |
| AclWI | GGATC | 2 cut(s) | 1230, 1240 |
| AcoI | YGGCCR | 2 cut(s) | 591, 1215 |
| AcsI | RAATTY | 4 cut(s) | 152, 562, 776, 1374 |
| AcyI | GRCGYC | 1 cut(s) | 1427 |
| AfaI | GTAC | 3 cut(s) | 437, 1192, 1399 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 92, 1219 |
| AflIII | ACRYGT | 2 cut(s) | 290, 438 |
| AgeI | ACCGGT | 1 cut(s) | 1187 |
| AjnI | CCWGG | 3 cut(s) | 854, 1102, 1212 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 215, 247 |
| AluBI | AGCT | 4 cut(s) | 29, 376, 1252, 1288 |
| AluI | AGCT | 4 cut(s) | 29, 376, 1252, 1288 |
| Alw21I | GWGCWC | 2 cut(s) | 31, 1254 |
| Alw26I | GTCTC | 3 cut(s) | 57, 341, 1273 |
| AlwI | GGATC | 2 cut(s) | 1230, 1240 |
| AoxI | GGCC | 2 cut(s) | 591, 1215 |
| ApoI | RAATTY | 4 cut(s) | 152, 562, 776, 1374 |
| AsiGI | ACCGGT | 1 cut(s) | 1187 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 981 |
| AspS9I | GGNCC | 2 cut(s) | 664, 910 |
| AsuHPI | GGTGA | 2 cut(s) | 349, 1274 |
| AvaII | GGWCC | 2 cut(s) | 664, 910 |
| BalI | TGGCCA | 2 cut(s) | 593, 1217 |
| BanII | GRGCYC | 2 cut(s) | 31, 1254 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 419, 451 |
| BbsI | GAAGAC | 1 cut(s) | 1190 |
| Bbv12I | GWGCWC | 2 cut(s) | 31, 1254 |
| BccI | CCATC | 1 cut(s) | 152 |
| BceAI | ACGGC | 1 cut(s) | 1449 |
| BciT130I | CCWGG | 3 cut(s) | 856, 1104, 1214 |
| BcoDI | GTCTC | 3 cut(s) | 57, 341, 1273 |
| BfaI | CTAG | 7 cut(s) | 32, 45, 711, 738, 956, 986, 1226 |
| BfmI | CTRYAG | 1 cut(s) | 57 |
| BisI | GCNGC | 1 cut(s) | 1210 |
| BlsI | GCNGC | 1 cut(s) | 1211 |
| Bme1390I | CCNGG | 3 cut(s) | 856, 1104, 1214 |
| Bme18I | GGWCC | 2 cut(s) | 664, 910 |
| BmgT120I | GGNCC | 2 cut(s) | 664, 910 |
| BmiI | GGNNCC | 1 cut(s) | 1448 |
| BmrFI | CCNGG | 3 cut(s) | 856, 1104, 1214 |
| BmsI | GCATC | 1 cut(s) | 472 |
| BpiI | GAAGAC | 1 cut(s) | 1190 |
| BpmI | CTGGAG | 1 cut(s) | 114 |
| Bpu10I | CCTNAGC | 1 cut(s) | 357 |
| BpuEI | CTTGAG | 1 cut(s) | 90 |
| BsaHI | GRCGYC | 1 cut(s) | 1427 |
| BsaI | GGTCTC | 1 cut(s) | 1273 |
| BsaJI | CCNNGG | 4 cut(s) | 854, 1102, 1201, 1218 |
| BsaWI | WCCGGW | 1 cut(s) | 1187 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1381, 1411 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 92, 1219 |
| Bse118I | RCCGGY | 1 cut(s) | 1187 |
| Bse1I | ACTGG | 1 cut(s) | 842 |
| BseBI | CCWGG | 3 cut(s) | 856, 1104, 1214 |
| BseDI | CCNNGG | 4 cut(s) | 854, 1102, 1201, 1218 |
| BseGI | GGATG | 2 cut(s) | 183, 1059 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 92, 1219 |
| BseMII | CTCAG | 2 cut(s) | 338, 1416 |
| BseNI | ACTGG | 1 cut(s) | 842 |
| BshFI | GGCC | 2 cut(s) | 593, 1217 |
| BshTI | ACCGGT | 1 cut(s) | 1187 |
| BsiHKAI | GWGCWC | 2 cut(s) | 31, 1254 |
| BsiSI | CCGG | 1 cut(s) | 1188 |
| BslFI | GGGAC | 3 cut(s) | 175, 837, 1085 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 92, 1219 |
| BsmAI | GTCTC | 3 cut(s) | 57, 341, 1273 |
| BsmFI | GGGAC | 3 cut(s) | 175, 837, 1085 |
| BsnI | GGCC | 2 cut(s) | 593, 1217 |
| Bso31I | GGTCTC | 1 cut(s) | 1273 |
| Bsp1286I | GDGCHC | 2 cut(s) | 31, 1254 |
| Bsp1407I | TGTACA | 1 cut(s) | 435 |
| Bsp143I | GATC | 7 cut(s) | 78, 505, 719, 964, 1222, 1232, 1353 |
| Bsp19I | CCATGG | 1 cut(s) | 1218 |
| BspACI | CCGC | 3 cut(s) | 335, 430, 1210 |
| BspANI | GGCC | 2 cut(s) | 593, 1217 |
| BspCNI | CTCAG | 2 cut(s) | 337, 1415 |
| BspLI | GGNNCC | 1 cut(s) | 1448 |
| BspPI | GGATC | 2 cut(s) | 1230, 1240 |
| BspTNI | GGTCTC | 1 cut(s) | 1273 |
| BsrFI | RCCGGY | 1 cut(s) | 1187 |
| BsrGI | TGTACA | 1 cut(s) | 435 |
| BsrI | ACTGG | 1 cut(s) | 842 |
| BssAI | RCCGGY | 1 cut(s) | 1187 |
| BssECI | CCNNGG | 4 cut(s) | 854, 1102, 1201, 1218 |
| BssMI | GATC | 7 cut(s) | 78, 505, 719, 964, 1222, 1232, 1353 |
| BssNI | GRCGYC | 1 cut(s) | 1427 |
| BssT1I | CCWWGG | 1 cut(s) | 1218 |
| Bst2UI | CCWGG | 3 cut(s) | 856, 1104, 1214 |
| Bst4CI | ACNGT | 2 cut(s) | 124, 1349 |
| BstACI | GRCGYC | 1 cut(s) | 1427 |
| BstAUI | TGTACA | 1 cut(s) | 435 |
| BstDEI | CTNAG | 4 cut(s) | 324, 357, 1385, 1402 |
| BstDSI | CCRYGG | 1 cut(s) | 1218 |
| BstF5I | GGATG | 2 cut(s) | 183, 1059 |
| BstKTI | GATC | 7 cut(s) | 81, 508, 722, 967, 1225, 1235, 1356 |
| BstMAI | GTCTC | 3 cut(s) | 57, 341, 1273 |
| BstMBI | GATC | 7 cut(s) | 78, 505, 719, 964, 1222, 1232, 1353 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1147, 1206 |
| BstNI | CCWGG | 3 cut(s) | 856, 1104, 1214 |
| BstNSI | RCATGY | 2 cut(s) | 294, 442 |
| BstSCI | CCNGG | 3 cut(s) | 854, 1102, 1212 |
| BstSFI | CTRYAG | 1 cut(s) | 57 |
| BstV2I | GAAGAC | 1 cut(s) | 1190 |
| BstX2I | RGATCY | 1 cut(s) | 1222 |
| BstYI | RGATCY | 1 cut(s) | 1222 |
| BsuRI | GGCC | 2 cut(s) | 593, 1217 |
| BtgI | CCRYGG | 1 cut(s) | 1218 |
| BtsCI | GGATG | 2 cut(s) | 183, 1059 |
| BtsI | GCAGTG | 3 cut(s) | 191, 566, 594 |
| BtsIMutI | CAGTG | 4 cut(s) | 191, 566, 594, 835 |
| Cfr10I | RCCGGY | 1 cut(s) | 1187 |
| Cfr13I | GGNCC | 2 cut(s) | 664, 910 |
| Csp6I | GTAC | 3 cut(s) | 436, 1191, 1398 |
| CspAI | ACCGGT | 1 cut(s) | 1187 |
| CviAII | CATG | 7 cut(s) | 291, 391, 439, 572, 659, 905, 1219 |
| CviQI | GTAC | 3 cut(s) | 436, 1191, 1398 |
| DdeI | CTNAG | 4 cut(s) | 324, 357, 1385, 1402 |
| DpnI | GATC | 7 cut(s) | 80, 507, 721, 966, 1224, 1234, 1355 |
| DpnII | GATC | 7 cut(s) | 78, 505, 719, 964, 1222, 1232, 1353 |
| DraI | TTTAAA | 1 cut(s) | 781 |
| EaeI | YGGCCR | 2 cut(s) | 591, 1215 |
| Ecl136II | GAGCTC | 2 cut(s) | 29, 1252 |
| Eco130I | CCWWGG | 1 cut(s) | 1218 |
| Eco24I | GRGCYC | 2 cut(s) | 31, 1254 |
| Eco31I | GGTCTC | 1 cut(s) | 1273 |
| Eco32I | GATATC | 1 cut(s) | 1457 |
| Eco47I | GGWCC | 2 cut(s) | 664, 910 |
| Eco53kI | GAGCTC | 2 cut(s) | 29, 1252 |
| EcoICRI | GAGCTC | 2 cut(s) | 29, 1252 |
| EcoRI | GAATTC | 2 cut(s) | 562, 1374 |
| EcoRII | CCWGG | 3 cut(s) | 854, 1102, 1212 |
| EcoRV | GATATC | 1 cut(s) | 1457 |
| EcoT14I | CCWWGG | 1 cut(s) | 1218 |
| EcoT22I | ATGCAT | 1 cut(s) | 649 |
| EcoT38I | GRGCYC | 2 cut(s) | 31, 1254 |
| ErhI | CCWWGG | 1 cut(s) | 1218 |
| FaeI | CATG | 7 cut(s) | 294, 394, 442, 575, 662, 908, 1222 |
| FaqI | GGGAC | 3 cut(s) | 175, 837, 1085 |
| FatI | CATG | 7 cut(s) | 290, 390, 438, 571, 658, 904, 1218 |
| Fnu4HI | GCNGC | 1 cut(s) | 1210 |
| FokI | GGATG | 2 cut(s) | 190, 1066 |
| FriOI | GRGCYC | 2 cut(s) | 31, 1254 |
| Fsp4HI | GCNGC | 1 cut(s) | 1210 |
| FspBI | CTAG | 7 cut(s) | 32, 45, 711, 738, 956, 986, 1226 |
| GluI | GCNGC | 1 cut(s) | 1210 |
| GsuI | CTGGAG | 1 cut(s) | 114 |
| HaeIII | GGCC | 2 cut(s) | 593, 1217 |
| HapII | CCGG | 1 cut(s) | 1188 |
| Hin1I | GRCGYC | 1 cut(s) | 1427 |
| Hin1II | CATG | 7 cut(s) | 294, 394, 442, 575, 662, 908, 1222 |
| HincII | GTYRAC | 1 cut(s) | 1431 |
| HindII | GTYRAC | 1 cut(s) | 1431 |
| HindIII | AAGCTT | 1 cut(s) | 374 |
| HinfI | GANTC | 5 cut(s) | 53, 280, 469, 575, 1265 |
| HpaII | CCGG | 1 cut(s) | 1188 |
| HphI | GGTGA | 2 cut(s) | 349, 1274 |
| Hpy166II | GTNNAC | 1 cut(s) | 1431 |
| Hpy188I | TCNGA | 8 cut(s) | 327, 668, 914, 1259, 1353, 1358, 1368, 1405 |
| Hpy188III | TCNNGA | 6 cut(s) | 45, 175, 711, 956, 1016, 1247 |
| Hpy8I | GTNNAC | 1 cut(s) | 1431 |
| Hpy99I | CGWCG | 1 cut(s) | 1259 |
| HpyAV | CCTTC | 3 cut(s) | 449, 496, 1432 |
| HpyCH4III | ACNGT | 2 cut(s) | 124, 1349 |
| HpyCH4IV | ACGT | 1 cut(s) | 1427 |
| HpyCH4V | TGCA | 6 cut(s) | 134, 571, 647, 800, 1048, 1150 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1147, 1206 |
| HpyF3I | CTNAG | 4 cut(s) | 324, 357, 1385, 1402 |
| HpySE526I | ACGT | 1 cut(s) | 1427 |
| Hsp92I | GRCGYC | 1 cut(s) | 1427 |
| Hsp92II | CATG | 7 cut(s) | 294, 394, 442, 575, 662, 908, 1222 |
| Kzo9I | GATC | 7 cut(s) | 78, 505, 719, 964, 1222, 1232, 1353 |
| LmnI | GCTCC | 2 cut(s) | 1118, 1358 |
| LweI | GCATC | 1 cut(s) | 472 |
| MaeI | CTAG | 7 cut(s) | 32, 45, 711, 738, 956, 986, 1226 |
| MaeII | ACGT | 1 cut(s) | 1427 |
| MaeIII | GTNAC | 1 cut(s) | 858 |
| MalI | GATC | 7 cut(s) | 80, 507, 721, 966, 1224, 1234, 1355 |
| MboI | GATC | 7 cut(s) | 78, 505, 719, 964, 1222, 1232, 1353 |
| MfeI | CAATTG | 1 cut(s) | 6 |
| MflI | RGATCY | 1 cut(s) | 1222 |
| MhlI | GDGCHC | 2 cut(s) | 31, 1254 |
| MlsI | TGGCCA | 2 cut(s) | 593, 1217 |
| MluNI | TGGCCA | 2 cut(s) | 593, 1217 |
| MlyI | GAGTC | 1 cut(s) | 62 |
| MmeI | TCCRAC | 5 cut(s) | 691, 937, 1237, 1453, 1474 |
| Mox20I | TGGCCA | 2 cut(s) | 593, 1217 |
| Mph1103I | ATGCAT | 1 cut(s) | 649 |
| MroXI | GAANNNNTTC | 1 cut(s) | 981 |
| MscI | TGGCCA | 2 cut(s) | 593, 1217 |
| MseI | TTAA | 6 cut(s) | 195, 264, 531, 551, 624, 780 |
| MslI | CAYNNNNRTG | 1 cut(s) | 480 |
| Msp20I | TGGCCA | 2 cut(s) | 593, 1217 |
| MspI | CCGG | 1 cut(s) | 1188 |
| MspR9I | CCNGG | 3 cut(s) | 856, 1104, 1214 |
| MunI | CAATTG | 1 cut(s) | 6 |
| MvaI | CCWGG | 3 cut(s) | 856, 1104, 1214 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1147, 1206 |
| NcoI | CCATGG | 1 cut(s) | 1218 |
| NdeII | GATC | 7 cut(s) | 78, 505, 719, 964, 1222, 1232, 1353 |
| NlaIII | CATG | 7 cut(s) | 294, 394, 442, 575, 662, 908, 1222 |
| NlaIV | GGNNCC | 1 cut(s) | 1448 |
| NmeAIII | GCCGAG | 1 cut(s) | 1226 |
| NsiI | ATGCAT | 1 cut(s) | 649 |
| NspI | RCATGY | 2 cut(s) | 294, 442 |
| PciI | ACATGT | 2 cut(s) | 290, 438 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1433 |
| PdmI | GAANNNNTTC | 1 cut(s) | 981 |
| PfeI | GAWTC | 4 cut(s) | 280, 469, 575, 1265 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 92 |
| PinAI | ACCGGT | 1 cut(s) | 1187 |
| PkrI | GCNGC | 1 cut(s) | 1211 |
| PleI | GAGTC | 1 cut(s) | 61 |
| PpsI | GAGTC | 1 cut(s) | 61 |
| PscI | ACATGT | 2 cut(s) | 290, 438 |
| PsiI | TTATAA | 1 cut(s) | 1110 |
| Psp124BI | GAGCTC | 2 cut(s) | 31, 1254 |
| Psp6I | CCWGG | 3 cut(s) | 854, 1102, 1212 |
| PspGI | CCWGG | 3 cut(s) | 854, 1102, 1212 |
| PspN4I | GGNNCC | 1 cut(s) | 1448 |
| PspPI | GGNCC | 2 cut(s) | 664, 910 |
| PsuI | RGATCY | 1 cut(s) | 1222 |
| RsaI | GTAC | 3 cut(s) | 437, 1192, 1399 |
| RsaNI | GTAC | 3 cut(s) | 436, 1191, 1398 |
| RseI | CAYNNNNRTG | 1 cut(s) | 480 |
| SacI | GAGCTC | 2 cut(s) | 31, 1254 |
| SaqAI | TTAA | 6 cut(s) | 195, 264, 531, 551, 624, 780 |
| SatI | GCNGC | 1 cut(s) | 1210 |
| Sau3AI | GATC | 7 cut(s) | 78, 505, 719, 964, 1222, 1232, 1353 |
| Sau96I | GGNCC | 2 cut(s) | 664, 910 |
| SchI | GAGTC | 1 cut(s) | 62 |
| ScrFI | CCNGG | 3 cut(s) | 856, 1104, 1214 |
| SduI | GDGCHC | 2 cut(s) | 31, 1254 |
| SfaNI | GCATC | 1 cut(s) | 472 |
| SfcI | CTRYAG | 1 cut(s) | 57 |
| SinI | GGWCC | 2 cut(s) | 664, 910 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 480 |
| SmlI | CTYRAG | 1 cut(s) | 105 |
| SmoI | CTYRAG | 1 cut(s) | 105 |
| SsiI | CCGC | 3 cut(s) | 335, 430, 1210 |
| SspMI | CTAG | 7 cut(s) | 32, 45, 711, 738, 956, 986, 1226 |
| SstI | GAGCTC | 2 cut(s) | 31, 1254 |
| StyD4I | CCNGG | 3 cut(s) | 854, 1102, 1212 |
| StyI | CCWWGG | 1 cut(s) | 1218 |
| TaaI | ACNGT | 2 cut(s) | 124, 1349 |
| TaiI | ACGT | 1 cut(s) | 1430 |
| TaqI | TCGA | 2 cut(s) | 283, 304 |
| TatI | WGTACW | 1 cut(s) | 435 |
| TauI | GCSGC | 1 cut(s) | 1212 |
| TfiI | GAWTC | 4 cut(s) | 280, 469, 575, 1265 |
| Tru1I | TTAA | 6 cut(s) | 195, 264, 531, 551, 624, 780 |
| Tru9I | TTAA | 6 cut(s) | 195, 264, 531, 551, 624, 780 |
| TscAI | CASTG | 4 cut(s) | 191, 573, 601, 842 |
| TspDTI | ATGAA | 6 cut(s) | 261, 537, 648, 822, 1070, 1283 |
| TspRI | CASTG | 4 cut(s) | 191, 573, 601, 842 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 92 |
| VpaK11BI | GGWCC | 2 cut(s) | 664, 910 |
| XapI | RAATTY | 4 cut(s) | 152, 562, 776, 1374 |
| XbaI | TCTAGA | 3 cut(s) | 44, 710, 955 |
| XceI | RCATGY | 2 cut(s) | 294, 442 |
| XmnI | GAANNNNTTC | 1 cut(s) | 981 |
| XspI | CTAG | 7 cut(s) | 32, 45, 711, 738, 956, 986, 1226 |
| ZraI | GACGTC | 1 cut(s) | 1428 |
| Zsp2I | ATGCAT | 1 cut(s) | 649 |