Rroxscaffold_1G00066330
RLK Family

Cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000278
Physical Location & Seq
Reverse (-)
87854789 .. 87855519
731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00066330.1

Sequence Viewer

Length: 312 bp
ATGGAGATGACCACCGCCGGCAATCGTCGCATAAGTGAGGTGCATCATATTCGAAAAAACCTTCCACCGATGAAGAACAGATCTGGTTATGGCATAAAAGATTGGGACATCCATCATTTGGGTATCTCCAAACTCTCTTCCCTTTCTTGTTTCAAAAAGCATAATAAACCATCGGACTTTAAATGCAACACTTGCATTTTAGGCAAGAGTCATCGTGTAACCTATCCGTTGAGCTCGAATAAAAGTATTTCTCCTTTTGATCTTGTTCACTCGATGTCCGGGGACCTTGTCCAAGAACACCCTCCGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 rve

Protein Analysis

103

Amino Acids

11.68

Weight (kDa)

9.47

Isoelectric Point (pI)

51.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 118
AccIII TCCGGA 1 cut(s) 304
AciI CCGC 1 cut(s) 15
AfiI CCNNNNNNNGG 1 cut(s) 118
AgsI TTSAA 1 cut(s) 154
AluBI AGCT 1 cut(s) 234
AluI AGCT 1 cut(s) 234
Alw21I GWGCWC 1 cut(s) 236
Aor13HI TCCGGA 1 cut(s) 304
AspS9I GGNCC 1 cut(s) 283
AsuC2I CCSGG 1 cut(s) 280
AsuII TTCGAA 1 cut(s) 52
AvaII GGWCC 1 cut(s) 283
BanII GRGCYC 1 cut(s) 236
Bbv12I GWGCWC 1 cut(s) 236
BccI CCATC 2 cut(s) 120, 178
BcgI CGANNNNNNTGC 2 cut(s) 32, 66
BcnI CCSGG 1 cut(s) 280
BglII AGATCT 1 cut(s) 80
Bme1390I CCNGG 1 cut(s) 280
Bme18I GGWCC 1 cut(s) 283
BmgT120I GGNCC 1 cut(s) 283
BmiI GGNNCC 1 cut(s) 284
BmrFI CCNGG 1 cut(s) 280
BmsI GCATC 1 cut(s) 52
Bpu14I TTCGAA 1 cut(s) 52
BpuMI CCSGG 1 cut(s) 280
BsaJI CCNNGG 1 cut(s) 279
BsaWI WCCGGW 1 cut(s) 304
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse118I RCCGGY 1 cut(s) 17
BseAI TCCGGA 1 cut(s) 304
BseDI CCNNGG 1 cut(s) 279
BseGI GGATG 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 118
BsiHKAI GWGCWC 1 cut(s) 236
BsiSI CCGG 3 cut(s) 18, 279, 305
BslFI GGGAC 2 cut(s) 119, 296
BslI CCNNNNNNNGG 1 cut(s) 118
BsmFI GGGAC 2 cut(s) 119, 296
Bsp119I TTCGAA 1 cut(s) 52
Bsp1286I GDGCHC 1 cut(s) 236
Bsp13I TCCGGA 1 cut(s) 304
Bsp143I GATC 2 cut(s) 80, 259
BspACI CCGC 1 cut(s) 15
BspEI TCCGGA 1 cut(s) 304
BspLI GGNNCC 1 cut(s) 284
BspT104I TTCGAA 1 cut(s) 52
BsrFI RCCGGY 1 cut(s) 17
BssAI RCCGGY 1 cut(s) 17
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 2 cut(s) 80, 259
Bst6I CTCTTC 1 cut(s) 142
BstAPI GCANNNNNTGC 1 cut(s) 192
BstBI TTCGAA 1 cut(s) 52
BstC8I GCNNGC 1 cut(s) 19
BstF5I GGATG 1 cut(s) 108
BstKTI GATC 2 cut(s) 83, 262
BstMBI GATC 2 cut(s) 80, 259
BstMWI GCNNNNNNNGC 3 cut(s) 27, 192, 201
BstSCI CCNGG 1 cut(s) 278
BstX2I RGATCY 1 cut(s) 80
BstYI RGATCY 1 cut(s) 80
BtsCI GGATG 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 19
Cfr10I RCCGGY 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 283
CviJI RGCY 1 cut(s) 234
CviKI_1 RGCY 1 cut(s) 234
DpnI GATC 2 cut(s) 82, 261
DpnII GATC 2 cut(s) 80, 259
DraI TTTAAA 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 142
EarI CTCTTC 1 cut(s) 142
Ecl136II GAGCTC 1 cut(s) 234
Eco24I GRGCYC 1 cut(s) 236
Eco47I GGWCC 1 cut(s) 283
Eco53kI GAGCTC 1 cut(s) 234
EcoICRI GAGCTC 1 cut(s) 234
EcoO109I RGGNCCY 1 cut(s) 283
EcoT38I GRGCYC 1 cut(s) 236
FaiI YATR 5 cut(s) 32, 48, 90, 95, 162
FaqI GGGAC 2 cut(s) 119, 296
FokI GGATG 1 cut(s) 95
FriOI GRGCYC 1 cut(s) 236
HapII CCGG 3 cut(s) 18, 279, 305
HinfI GANTC 1 cut(s) 208
HpaII CCGG 3 cut(s) 18, 279, 305
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 1 cut(s) 175
Hpy188III TCNNGA 1 cut(s) 305
Hpy8I GTNNAC 1 cut(s) 268
Hpy99I CGWCG 1 cut(s) 30
HpyAV CCTTC 1 cut(s) 71
HpyCH4V TGCA 3 cut(s) 43, 186, 195
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 192, 201
Kpn2I TCCGGA 1 cut(s) 304
KroI GCCGGC 1 cut(s) 17
KroNI GCCGGC 1 cut(s) 19
Kzo9I GATC 2 cut(s) 80, 259
LpnPI CCDG 3 cut(s) 31, 69, 292
LweI GCATC 1 cut(s) 52
MaeIII GTNAC 1 cut(s) 217
MalI GATC 2 cut(s) 82, 261
MboI GATC 2 cut(s) 80, 259
MboII GAAGA 2 cut(s) 85, 129
MflI RGATCY 1 cut(s) 80
MhlI GDGCHC 1 cut(s) 236
MlyI GAGTC 1 cut(s) 217
MnlI CCTC 2 cut(s) 31, 312
MroI TCCGGA 1 cut(s) 304
MroNI GCCGGC 1 cut(s) 17
MseI TTAA 1 cut(s) 180
MspI CCGG 3 cut(s) 18, 279, 305
MspR9I CCNGG 1 cut(s) 280
MwoI GCNNNNNNNGC 3 cut(s) 27, 192, 201
NaeI GCCGGC 1 cut(s) 19
NciI CCSGG 1 cut(s) 280
NdeII GATC 2 cut(s) 80, 259
NgoMIV GCCGGC 1 cut(s) 17
NlaIV GGNNCC 1 cut(s) 284
NspV TTCGAA 1 cut(s) 52
PdiI GCCGGC 1 cut(s) 19
PflFI GACNNNGTC 1 cut(s) 287
PflMI CCANNNNNTGG 1 cut(s) 118
PleI GAGTC 1 cut(s) 216
PpsI GAGTC 1 cut(s) 216
PpuMI RGGWCCY 1 cut(s) 283
Psp124BI GAGCTC 1 cut(s) 236
Psp5II RGGWCCY 1 cut(s) 283
PspN4I GGNNCC 1 cut(s) 284
PspPI GGNCC 1 cut(s) 283
PspPPI RGGWCCY 1 cut(s) 283
PsuI RGATCY 1 cut(s) 80
PsyI GACNNNGTC 1 cut(s) 287
SacI GAGCTC 1 cut(s) 236
SaqAI TTAA 1 cut(s) 180
Sau3AI GATC 2 cut(s) 80, 259
Sau96I GGNCC 1 cut(s) 283
SchI GAGTC 1 cut(s) 217
ScrFI CCNGG 1 cut(s) 280
SduI GDGCHC 1 cut(s) 236
SetI ASST 5 cut(s) 42, 63, 224, 236, 288
SfaNI GCATC 1 cut(s) 52
SfuI TTCGAA 1 cut(s) 52
SinI GGWCC 1 cut(s) 283
SsiI CCGC 1 cut(s) 15
SstI GAGCTC 1 cut(s) 236
StyD4I CCNGG 1 cut(s) 278
TaqI TCGA 3 cut(s) 52, 236, 272
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TspDTI ATGAA 1 cut(s) 86
TspGWI ACGGA 1 cut(s) 216
Tth111I GACNNNGTC 1 cut(s) 287
Van91I CCANNNNNTGG 1 cut(s) 118
VpaK11BI GGWCC 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.