FvH4_6g04373

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000278
Physical Location & Seq
Reverse (-)
2375449 .. 2376721
1273 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g04373.t2

Sequence Viewer

Length: 1056 bp
ATGCTCTCGGAACTGTTAAACTTGGAGGTGAATATGAGTGAAGAAGATAAAGTCTCGGTTCTTCTTGCATCACTTCTTGAGAAGTATGATCACTTGGTGACAACGATGTTATACGGGAAGCAGAGTATAGTTCTCGATGAAGTCACATCAACATTTCTCTCTAATGAAAATAGGAGAAAAGTTGTAGATGTTAATTATGAGGACTCTAGAGTATTTTCTGCTAGAGGAAGGAGAGAAAATCGAGATCAAGGTTGGAAGAGCTCTAAGTCCAACTCAGGACATCACAAGGACAAGGAGTGCTACTACTGTCATGAAAAAGGGCACATCGCGTTGCACTGCCCAAAGCTGAAGAAAAAGAAAGATGAAGGAAATGAGAAAAATGAAGATTCTCATCGAAGAGTTTCAGCAAATTTCATTTCAGATTATGGTGATTGTGTTATCATGGCAACCTCTCATTCTGAAGGAAAAGCTTTCAAGGTGGAAGGCATTGGAGCAGTGAAGATCAAGACACATGATGGTTTGGTGAAAATTCTTAGAGATGTCAGATATGTACCCAATTTAAGGTGGAATCTCATATCAGTTGGTGCACTCGACTCCAAAGGTTACAAGATTGTGACAGAAGGTGGAGTTTTGAAGGTCATGATGGGTTCTCATGTGGTGTTGCGTGGAAATAAGAAGTTGAGCAGGCGTGGCTTGCGAGTTAGTGAGAAGAATGGCGATCTTATTTCCCAAAAGTATTGTGAGGGAGCTACACAATCAAGGGGAAAGAAATCCGCATTTAGATGGCAACCAAAATTGCAGCAGTCCTTACAGGGATGCAGACCCATAAGGACAAGTATGACGTTGGCTCGTGGGAATCCTGATGGCAATAAGTTAGCTCATTATGGTGCCATGAAGTTGAGTTCGAGGCGAGCAGTTGGTCATGTTGGTGATGCTATGGAAAGTCAAGAGCGCTCTATCCTCAATTGTGGTGACGAGATGACTTTCATTGATCAACCGGTGGTTCGTGGGTGGTTGGAGAAGGTTGCTTGTGGCGATGTCAAATCATGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

352

Amino Acids

39.38

Weight (kDa)

9.38

Isoelectric Point (pI)

46.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 3 - 60 5e-06 gag-polypeptide of LTR copia-type
Pol_BBD PF22936 161 - 241 2.8e-28 Pol polyprotein, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 887
AccII CGCG 1 cut(s) 329
AciI CCGC 1 cut(s) 774
AcsI RAATTY 2 cut(s) 409, 528
AcuI CTGAAG 2 cut(s) 368, 480
AdeI CACNNNGTG 1 cut(s) 97
AfaI GTAC 1 cut(s) 552
AfeI AGCGCT 1 cut(s) 953
AfiI CCNNNNNNNGG 1 cut(s) 561
AgeI ACCGGT 1 cut(s) 997
AgsI TTSAA 2 cut(s) 475, 634
AluBI AGCT 5 cut(s) 261, 346, 470, 749, 878
AluI AGCT 5 cut(s) 261, 346, 470, 749, 878
Alw21I GWGCWC 2 cut(s) 263, 589
Alw26I GTCTC 1 cut(s) 58
Alw44I GTGCAC 1 cut(s) 585
Aor51HI AGCGCT 1 cut(s) 953
ApaLI GTGCAC 1 cut(s) 585
ApeKI GCWGC 1 cut(s) 799
ApoI RAATTY 2 cut(s) 409, 528
AsiGI ACCGGT 1 cut(s) 997
Asp700I GAANNNNTTC 1 cut(s) 400
AspLEI GCGC 1 cut(s) 954
AsuHPI GGTGA 6 cut(s) 40, 109, 440, 535, 941, 983
BaeGI GKGCMC 2 cut(s) 324, 589
BanI GGYRCC 1 cut(s) 887
BanII GRGCYC 1 cut(s) 263
BauI CACGAG 1 cut(s) 849
Bbv12I GWGCWC 2 cut(s) 263, 589
BbvI GCAGC 1 cut(s) 811
BccI CCATC 4 cut(s) 509, 637, 777, 857
BclI TGATCA 2 cut(s) 88, 991
BcoDI GTCTC 1 cut(s) 58
BfaI CTAG 2 cut(s) 207, 222
BfoI RGCGCY 1 cut(s) 955
BisI GCNGC 1 cut(s) 800
BlsI GCNGC 1 cut(s) 801
BmiI GGNNCC 1 cut(s) 889
BmsI GCATC 3 cut(s) 77, 806, 922
BpuEI CTTGAG 1 cut(s) 98
BsaBI GATNNNNATC 1 cut(s) 390
BsaWI WCCGGW 1 cut(s) 997
Bsc4I CCNNNNNNNGG 1 cut(s) 561
Bse118I RCCGGY 1 cut(s) 997
Bse8I GATNNNNATC 1 cut(s) 390
BseGI GGATG 1 cut(s) 821
BseJI GATNNNNATC 1 cut(s) 390
BseLI CCNNNNNNNGG 1 cut(s) 561
BseMII CTCAG 1 cut(s) 288
BseSI GKGCMC 2 cut(s) 324, 589
BseXI GCAGC 1 cut(s) 811
Bsh1236I CGCG 1 cut(s) 329
BshNI GGYRCC 1 cut(s) 887
BshTI ACCGGT 1 cut(s) 997
BsiHKAI GWGCWC 2 cut(s) 263, 589
BsiSI CCGG 1 cut(s) 998
BslI CCNNNNNNNGG 1 cut(s) 561
BsmAI GTCTC 1 cut(s) 58
Bsp1286I GDGCHC 3 cut(s) 263, 324, 589
Bsp143I GATC 5 cut(s) 88, 244, 501, 718, 991
BspACI CCGC 1 cut(s) 774
BspCNI CTCAG 1 cut(s) 287
BspFNI CGCG 1 cut(s) 329
BspHI TCATGA 3 cut(s) 310, 639, 1052
BspLI GGNNCC 1 cut(s) 889
BspQI GCTCTTC 1 cut(s) 251
BspT107I GGYRCC 1 cut(s) 887
BsrFI RCCGGY 1 cut(s) 997
BssAI RCCGGY 1 cut(s) 997
BssMI GATC 5 cut(s) 88, 244, 501, 718, 991
BssSI CACGAG 1 cut(s) 849
Bst2BI CACGAG 1 cut(s) 849
Bst4CI ACNGT 2 cut(s) 15, 308
Bst6I CTCTTC 2 cut(s) 251, 391
BstC8I GCNNGC 3 cut(s) 686, 695, 912
BstDEI CTNAG 3 cut(s) 264, 274, 533
BstF5I GGATG 1 cut(s) 821
BstFNI CGCG 1 cut(s) 329
BstH2I RGCGCY 1 cut(s) 955
BstHHI GCGC 1 cut(s) 954
BstKTI GATC 5 cut(s) 91, 247, 504, 721, 994
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 5 cut(s) 88, 244, 501, 718, 991
BstMWI GCNNNNNNNGC 2 cut(s) 690, 694
BstSLI GKGCMC 2 cut(s) 324, 589
BstUI CGCG 1 cut(s) 329
BstV1I GCAGC 1 cut(s) 811
BtgZI GCGATG 2 cut(s) 310, 1050
BtsCI GGATG 1 cut(s) 821
BtsI GCAGTG 2 cut(s) 334, 501
BtsIMutI CAGTG 2 cut(s) 334, 501
Cac8I GCNNGC 3 cut(s) 686, 695, 912
CciI TCATGA 3 cut(s) 310, 639, 1052
CfoI GCGC 1 cut(s) 954
Cfr10I RCCGGY 1 cut(s) 997
Csp6I GTAC 1 cut(s) 551
CspAI ACCGGT 1 cut(s) 997
CviAII CATG 9 cut(s) 311, 442, 512, 640, 653, 892, 923, 1047, 1053
CviJI RGCY 7 cut(s) 261, 346, 470, 693, 749, 848, 878
CviKI_1 RGCY 7 cut(s) 261, 346, 470, 693, 749, 848, 878
CviQI GTAC 1 cut(s) 551
DdeI CTNAG 3 cut(s) 264, 274, 533
DpnI GATC 5 cut(s) 90, 246, 503, 720, 993
DpnII GATC 5 cut(s) 88, 244, 501, 718, 991
DraIII CACNNNGTG 1 cut(s) 97
Eam1104I CTCTTC 2 cut(s) 251, 391
EarI CTCTTC 2 cut(s) 251, 391
Ecl136II GAGCTC 1 cut(s) 261
Eco24I GRGCYC 1 cut(s) 263
Eco47III AGCGCT 1 cut(s) 953
Eco53kI GAGCTC 1 cut(s) 261
Eco57I CTGAAG 2 cut(s) 368, 480
EcoICRI GAGCTC 1 cut(s) 261
EcoT38I GRGCYC 1 cut(s) 263
FaeI CATG 9 cut(s) 314, 445, 515, 643, 656, 895, 926, 1050, 1056
FatI CATG 9 cut(s) 310, 441, 511, 639, 652, 891, 922, 1046, 1052
FbaI TGATCA 2 cut(s) 88, 991
Fnu4HI GCNGC 1 cut(s) 800
FokI GGATG 1 cut(s) 828
FriOI GRGCYC 1 cut(s) 263
Fsp4HI GCNGC 1 cut(s) 800
FspBI CTAG 2 cut(s) 207, 222
GlaI GCGC 1 cut(s) 953
GluI GCNGC 1 cut(s) 800
HaeII RGCGCY 1 cut(s) 955
HapII CCGG 1 cut(s) 998
HhaI GCGC 1 cut(s) 954
Hin1II CATG 9 cut(s) 314, 445, 515, 643, 656, 895, 926, 1050, 1056
Hin6I GCGC 1 cut(s) 952
HinP1I GCGC 1 cut(s) 952
HindIII AAGCTT 1 cut(s) 468
HinfI GANTC 5 cut(s) 203, 386, 568, 593, 856
HpaII CCGG 1 cut(s) 998
HphI GGTGA 6 cut(s) 40, 109, 440, 535, 941, 983
Hpy166II GTNNAC 1 cut(s) 587
Hpy188I TCNGA 4 cut(s) 10, 421, 460, 545
Hpy8I GTNNAC 1 cut(s) 587
HpyAV CCTTC 7 cut(s) 222, 359, 455, 476, 614, 628, 1015
HpyCH4III ACNGT 2 cut(s) 15, 308
HpyCH4IV ACGT 1 cut(s) 842
HpyCH4V TGCA 5 cut(s) 68, 334, 587, 799, 819
HpyF10VI GCNNNNNNNGC 2 cut(s) 690, 694
HpyF3I CTNAG 3 cut(s) 264, 274, 533
HpySE526I ACGT 1 cut(s) 842
Hsp92II CATG 9 cut(s) 314, 445, 515, 643, 656, 895, 926, 1050, 1056
HspAI GCGC 1 cut(s) 952
Ksp22I TGATCA 2 cut(s) 88, 991
Kzo9I GATC 5 cut(s) 88, 244, 501, 718, 991
LguI GCTCTTC 1 cut(s) 251
LmnI GCTCC 2 cut(s) 491, 746
LpnPI CCDG 5 cut(s) 261, 670, 797, 873, 1011
Lsp1109I GCAGC 1 cut(s) 811
LweI GCATC 3 cut(s) 77, 806, 922
MaeI CTAG 2 cut(s) 207, 222
MaeII ACGT 1 cut(s) 842
MaeIII GTNAC 5 cut(s) 97, 142, 602, 613, 971
MalI GATC 5 cut(s) 90, 246, 503, 720, 993
MboI GATC 5 cut(s) 88, 244, 501, 718, 991
MboII GAAGA 9 cut(s) 53, 53, 56, 268, 361, 395, 408, 511, 721
MfeI CAATTG 1 cut(s) 964
MhlI GDGCHC 3 cut(s) 263, 324, 589
MluCI AATT 6 cut(s) 193, 409, 528, 556, 794, 964
MlyI GAGTC 2 cut(s) 197, 587
MmeI TCCRAC 3 cut(s) 233, 294, 996
MnlI CCTC 7 cut(s) 19, 193, 218, 460, 736, 900, 971
MroXI GAANNNNTTC 1 cut(s) 400
MseI TTAA 3 cut(s) 17, 192, 560
MslI CAYNNNNRTG 4 cut(s) 781, 885, 927, 1051
MspI CCGG 1 cut(s) 998
MunI CAATTG 1 cut(s) 964
MvnI CGCG 1 cut(s) 329
MwoI GCNNNNNNNGC 2 cut(s) 690, 694
NdeII GATC 5 cut(s) 88, 244, 501, 718, 991
NlaIII CATG 9 cut(s) 314, 445, 515, 643, 656, 895, 926, 1050, 1056
NlaIV GGNNCC 1 cut(s) 889
NmuCI GTSAC 4 cut(s) 97, 142, 613, 971
PagI TCATGA 3 cut(s) 310, 639, 1052
PciSI GCTCTTC 1 cut(s) 251
PdmI GAANNNNTTC 1 cut(s) 400
PfeI GAWTC 3 cut(s) 386, 568, 856
PinAI ACCGGT 1 cut(s) 997
PkrI GCNGC 1 cut(s) 801
PleI GAGTC 2 cut(s) 197, 587
PpsI GAGTC 2 cut(s) 197, 587
Psp124BI GAGCTC 1 cut(s) 263
PspN4I GGNNCC 1 cut(s) 889
RsaI GTAC 1 cut(s) 552
RsaNI GTAC 1 cut(s) 551
RseI CAYNNNNRTG 4 cut(s) 781, 885, 927, 1051
SacI GAGCTC 1 cut(s) 263
SapI GCTCTTC 1 cut(s) 251
SaqAI TTAA 3 cut(s) 17, 192, 560
SatI GCNGC 1 cut(s) 800
Sau3AI GATC 5 cut(s) 88, 244, 501, 718, 991
SchI GAGTC 2 cut(s) 197, 587
SduI GDGCHC 3 cut(s) 263, 324, 589
SfaNI GCATC 3 cut(s) 77, 806, 922
SmiMI CAYNNNNRTG 4 cut(s) 781, 885, 927, 1051
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 6 cut(s) 193, 409, 528, 556, 794, 964
SsiI CCGC 1 cut(s) 774
SspMI CTAG 2 cut(s) 207, 222
SstI GAGCTC 1 cut(s) 263
TaaI ACNGT 2 cut(s) 15, 308
TaiI ACGT 1 cut(s) 845
TaqI TCGA 5 cut(s) 135, 241, 394, 591, 905
TasI AATT 6 cut(s) 193, 409, 528, 556, 794, 964
TfiI GAWTC 3 cut(s) 386, 568, 856
Tru1I TTAA 3 cut(s) 17, 192, 560
Tru9I TTAA 3 cut(s) 17, 192, 560
TscAI CASTG 2 cut(s) 341, 501
TseFI GTSAC 4 cut(s) 97, 142, 613, 971
TseI GCWGC 1 cut(s) 799
Tsp45I GTSAC 4 cut(s) 97, 142, 613, 971
TspDTI ATGAA 9 cut(s) 153, 180, 327, 378, 396, 403, 908, 976, 1041
TspRI CASTG 2 cut(s) 341, 501
VneI GTGCAC 1 cut(s) 585
XapI RAATTY 2 cut(s) 409, 528
XbaI TCTAGA 1 cut(s) 206
XmnI GAANNNNTTC 1 cut(s) 400
XspI CTAG 2 cut(s) 207, 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.