Prupe.1G258000_v2.0.a1

Pfam:UBN2_2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000278
Physical Location & Seq
Reverse (-)
26786571 .. 26787242
672 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G258000.1

Sequence Viewer

Length: 663 bp
ATGAAATACGTCCTTAAGCAGCAAGGACTTAGCGTAGTCTTGGCAAGCAAAGAAAAAAAGTCGGAAACCATAATAAATGCGGAGTGGGAAAACTTAGACGAGCTTGCTAAAAGATTCATCGAACATCATCTCACAGATAACATGTTGTGTAATTCGATGGAAGACATCACTTGGGAGAAAATTGAAGAGGAGTTTGCTTTAAAATCGTTGTCCAACAAGCTTTTCTTAAAGGATGAGCTTCACTCTCTAAAGATAGAGAAGGACGCAAACATGATGAAGCATCTTAGCTCCTTTAATAGGTGTATTGAAGATTTGCAAAGGTTGGATGAAGTTTATAAGTCGGAAGACAAGGCCGTGATGTTGTTGACATCCGTGCCTCCGTCTTATAAGCACTTCTGCACTACGCTGATGTTCGGTAAGAGAACTCTAAAGAATGAAGAAGTGATGGAAGAAATCCTGACGCATCACCGAATGGTTCAACGTTTCGAAGAATGCTCTCAAAGTGAAGGTCTTGTGGCAAGGATCGGAGGGAGGGGTCGTTCAAGTAAGCGCGGGGGCAAGTCAAGCAATGATGAAAATTTTAGATATAGGGACAATGAAGGGGATTCGAGTGTGGGTCTAAGGCCGAAAGTTCATGTCACACCTCAAAATCGAGACACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

221

Amino Acids

25.56

Weight (kDa)

6.47

Isoelectric Point (pI)

49.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 336, 387
AccII CGCG 1 cut(s) 552
AciI CCGC 2 cut(s) 80, 552
AclI AACGTT 1 cut(s) 481
AclWI GGATC 1 cut(s) 530
AcsI RAATTY 1 cut(s) 577
AcvI CACGTG 1 cut(s) 660
AfiI CCNNNNNNNGG 1 cut(s) 297
AflII CTTAAG 1 cut(s) 14
AflIII ACRYGT 2 cut(s) 141, 657
AgsI TTSAA 4 cut(s) 185, 308, 479, 543
AjuI GAANNNNNNNTTGG 2 cut(s) 206, 238
AloI GAACNNNNNNTCC 2 cut(s) 523, 555
AluBI AGCT 4 cut(s) 103, 220, 238, 288
AluI AGCT 4 cut(s) 103, 220, 238, 288
Alw26I GTCTC 1 cut(s) 648
AlwI GGATC 1 cut(s) 530
AoxI GGCC 2 cut(s) 351, 623
ApeKI GCWGC 1 cut(s) 19
ApoI RAATTY 1 cut(s) 577
ArsI GACNNNNNNTTYG 2 cut(s) 493, 525
AspLEI GCGC 1 cut(s) 552
AsuHPI GGTGA 1 cut(s) 458
AsuII TTCGAA 1 cut(s) 486
BbrPI CACGTG 1 cut(s) 660
BbsI GAAGAC 2 cut(s) 168, 351
BbvI GCAGC 1 cut(s) 31
BccI CCATC 2 cut(s) 151, 439
BceAI ACGGC 1 cut(s) 338
BcoDI GTCTC 1 cut(s) 648
BfrI CTTAAG 1 cut(s) 14
BisI GCNGC 1 cut(s) 20
BlsI GCNGC 1 cut(s) 21
BmsI GCATC 2 cut(s) 289, 472
BpiI GAAGAC 2 cut(s) 168, 351
BplI GAGNNNNNCTC 2 cut(s) 227, 259
Bpu14I TTCGAA 1 cut(s) 486
BsaAI YACGTR 1 cut(s) 660
BsaXI ACNNNNNCTCC 2 cut(s) 523, 553
Bsc4I CCNNNNNNNGG 1 cut(s) 297
Bse3DI GCAATG 1 cut(s) 574
BseGI GGATG 3 cut(s) 238, 331, 368
BseLI CCNNNNNNNGG 1 cut(s) 297
BseMI GCAATG 1 cut(s) 574
BseRI GAGGAG 1 cut(s) 203
BseXI GCAGC 1 cut(s) 31
BsgI GTGCAG 1 cut(s) 382
Bsh1236I CGCG 1 cut(s) 552
BshFI GGCC 2 cut(s) 353, 625
BslFI GGGAC 1 cut(s) 605
BslI CCNNNNNNNGG 1 cut(s) 297
BsmAI GTCTC 1 cut(s) 648
BsmFI GGGAC 1 cut(s) 605
BsmI GAATGC 1 cut(s) 497
BsnI GGCC 2 cut(s) 353, 625
Bsp119I TTCGAA 1 cut(s) 486
Bsp143I GATC 1 cut(s) 522
BspACI CCGC 2 cut(s) 80, 552
BspANI GGCC 2 cut(s) 353, 625
BspFNI CGCG 1 cut(s) 552
BspPI GGATC 1 cut(s) 530
BspT104I TTCGAA 1 cut(s) 486
BspTI CTTAAG 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 574
BssMI GATC 1 cut(s) 522
Bst6I CTCTTC 1 cut(s) 180
BstAFI CTTAAG 1 cut(s) 14
BstBAI YACGTR 1 cut(s) 660
BstBI TTCGAA 1 cut(s) 486
BstC8I GCNNGC 2 cut(s) 46, 105
BstDEI CTNAG 4 cut(s) 29, 94, 284, 620
BstENI CCTNNNNNAGG 1 cut(s) 295
BstF5I GGATG 3 cut(s) 238, 331, 368
BstFNI CGCG 1 cut(s) 552
BstHHI GCGC 1 cut(s) 552
BstKTI GATC 1 cut(s) 525
BstMAI GTCTC 1 cut(s) 648
BstMBI GATC 1 cut(s) 522
BstMWI GCNNNNNNNGC 1 cut(s) 564
BstNSI RCATGY 1 cut(s) 145
BstUI CGCG 1 cut(s) 552
BstV1I GCAGC 1 cut(s) 31
BstV2I GAAGAC 2 cut(s) 168, 351
BsuRI GGCC 2 cut(s) 353, 625
BtsCI GGATG 3 cut(s) 238, 331, 368
Cac8I GCNNGC 2 cut(s) 46, 105
CfoI GCGC 1 cut(s) 552
CseI GACGC 2 cut(s) 272, 469
CviAII CATG 3 cut(s) 142, 271, 635
CviJI RGCY 6 cut(s) 103, 220, 238, 288, 353, 625
CviKI_1 RGCY 6 cut(s) 103, 220, 238, 288, 353, 625
DdeI CTNAG 4 cut(s) 29, 94, 284, 620
DpnI GATC 1 cut(s) 524
DpnII GATC 1 cut(s) 522
DraI TTTAAA 1 cut(s) 201
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Eco72I CACGTG 1 cut(s) 660
EcoNI CCTNNNNNAGG 1 cut(s) 295
FaeI CATG 3 cut(s) 145, 274, 638
FaiI YATR 7 cut(s) 71, 143, 272, 336, 387, 588, 636
FalI AAGNNNNNCTT 2 cut(s) 209, 241
FaqI GGGAC 1 cut(s) 605
FatI CATG 3 cut(s) 141, 270, 634
FauI CCCGC 1 cut(s) 545
Fnu4HI GCNGC 1 cut(s) 20
FokI GGATG 3 cut(s) 245, 338, 355
Fsp4HI GCNGC 1 cut(s) 20
GlaI GCGC 1 cut(s) 551
GluI GCNGC 1 cut(s) 20
HaeIII GGCC 2 cut(s) 353, 625
HgaI GACGC 2 cut(s) 272, 469
HhaI GCGC 1 cut(s) 552
Hin1II CATG 3 cut(s) 145, 274, 638
Hin6I GCGC 1 cut(s) 550
HinP1I GCGC 1 cut(s) 550
HincII GTYRAC 1 cut(s) 366
HindII GTYRAC 1 cut(s) 366
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 2 cut(s) 114, 605
HphI GGTGA 1 cut(s) 458
Hpy166II GTNNAC 1 cut(s) 366
Hpy188I TCNGA 3 cut(s) 64, 343, 527
Hpy188III TCNNGA 2 cut(s) 457, 653
Hpy8I GTNNAC 1 cut(s) 366
HpyAV CCTTC 3 cut(s) 253, 500, 593
HpyCH4IV ACGT 3 cut(s) 9, 481, 659
HpyCH4V TGCA 2 cut(s) 316, 399
HpyF10VI GCNNNNNNNGC 1 cut(s) 564
HpyF3I CTNAG 4 cut(s) 29, 94, 284, 620
HpySE526I ACGT 3 cut(s) 9, 481, 659
Hsp92II CATG 3 cut(s) 145, 274, 638
HspAI GCGC 1 cut(s) 550
Kzo9I GATC 1 cut(s) 522
LmnI GCTCC 1 cut(s) 293
LpnPI CCDG 1 cut(s) 470
Lsp1109I GCAGC 1 cut(s) 31
LweI GCATC 2 cut(s) 289, 472
MaeII ACGT 3 cut(s) 9, 481, 659
MaeIII GTNAC 1 cut(s) 637
MalI GATC 1 cut(s) 524
MboI GATC 1 cut(s) 522
MboII GAAGA 7 cut(s) 173, 197, 320, 356, 449, 461, 500
MluCI AATT 3 cut(s) 151, 180, 577
MmeI TCCRAC 4 cut(s) 42, 237, 303, 321
MnlI CCTC 5 cut(s) 181, 387, 521, 525, 654
MseI TTAA 4 cut(s) 15, 200, 227, 294
MspCI CTTAAG 1 cut(s) 14
Mva1269I GAATGC 1 cut(s) 497
MvnI CGCG 1 cut(s) 552
MwoI GCNNNNNNNGC 1 cut(s) 564
NdeII GATC 1 cut(s) 522
NlaIII CATG 3 cut(s) 145, 274, 638
NmuCI GTSAC 1 cut(s) 637
NspI RCATGY 1 cut(s) 145
NspV TTCGAA 1 cut(s) 486
PciI ACATGT 1 cut(s) 141
PctI GAATGC 1 cut(s) 497
PfeI GAWTC 2 cut(s) 114, 605
PkrI GCNGC 1 cut(s) 21
PmaCI CACGTG 1 cut(s) 660
PmlI CACGTG 1 cut(s) 660
Ppu21I YACGTR 1 cut(s) 660
PscI ACATGT 1 cut(s) 141
PsiI TTATAA 2 cut(s) 336, 387
Psp1406I AACGTT 1 cut(s) 481
PspCI CACGTG 1 cut(s) 660
SaqAI TTAA 4 cut(s) 15, 200, 227, 294
SatI GCNGC 1 cut(s) 20
Sau3AI GATC 1 cut(s) 522
SfaNI GCATC 2 cut(s) 289, 472
SfuI TTCGAA 1 cut(s) 486
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 3 cut(s) 151, 180, 577
SsiI CCGC 2 cut(s) 80, 552
TaiI ACGT 3 cut(s) 12, 484, 662
TaqI TCGA 5 cut(s) 120, 155, 486, 608, 652
TasI AATT 3 cut(s) 151, 180, 577
TfiI GAWTC 2 cut(s) 114, 605
Tru1I TTAA 4 cut(s) 15, 200, 227, 294
Tru9I TTAA 4 cut(s) 15, 200, 227, 294
TseFI GTSAC 1 cut(s) 637
TseI GCWGC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 637
TspDTI ATGAA 8 cut(s) 17, 106, 290, 342, 450, 588, 612, 623
TspGWI ACGGA 2 cut(s) 361, 369
Vha464I CTTAAG 1 cut(s) 14
XagI CCTNNNNNAGG 1 cut(s) 295
XapI RAATTY 1 cut(s) 577
XceI RCATGY 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.