pycom01g10100

Belongs to the PI3 PI4-kinase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
10950218 .. 10950984
767 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g10100.1

Sequence Viewer

Length: 666 bp
ATGTCGTCAGTGAAAGTTGATATTGAAAAGTTCGGTAGCAATGACTTTGGTATTTGGCAATTGAAGATGTGTGCTTTGTTAGTTCAACAAGGGCCCTTAAAAACGCCAAAGGGTGTGAAGGCTTTGCTGAATTCATGGACTAATGAAGAAAAAGAAGATGTTATGGAGCGGGCACTTGGAGCAATCATGCTGATTTTATCGAATGAAGTCTTGCATGAAGTTGGTAACATCAAATATGCACCGGAGTTGTGGCTAAAATTGGAGAGCTTGTATATGACCAAATTCCTTCCTAAACGTGTGGACGACCAAATTAGTGATGAGGATTATGCGATAACTTTGTTGTGTTCTTCATCTCCTTCGTATGAACACTTTGTCGATACCATGCCATTTGGTAGAGAAAGTCTTAGTTTGGAAGATATTAAAGTCGCTTTGAATTCTAAAGAGCTAAAGAATAAAGTGTCTGACACACAAGATGAAGCTTTGGTAGTTCAAGGAAGGAATAAGGAAAGGAGCAAACTTGGAAAGAACACTTGTAGCTATTGTTATAAGGAAGGTCATTGGAAAGTAGATTGCCCTAAACTCAAGGGCAAAAAGAAGCCGTTTGATAAGTCTTTTGCTAGTGTTGATACAAACATTGCAAAAGATCGTTGTTCTGAACTCCTCTAA

Protein Analysis

222

Amino Acids

25.06

Weight (kDa)

6.83

Isoelectric Point (pI)

34.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 546
AccBSI CCGCTC 1 cut(s) 169
AciI CCGC 1 cut(s) 169
AcsI RAATTY 3 cut(s) 130, 281, 433
AflIII ACRYGT 1 cut(s) 295
AgsI TTSAA 5 cut(s) 26, 64, 86, 433, 491
AluBI AGCT 4 cut(s) 267, 445, 479, 537
AluI AGCT 4 cut(s) 267, 445, 479, 537
AoxI GGCC 1 cut(s) 92
ApaI GGGCCC 1 cut(s) 96
ApoI RAATTY 3 cut(s) 130, 281, 433
AspS9I GGNCC 2 cut(s) 92, 93
BaeGI GKGCMC 2 cut(s) 96, 175
BanII GRGCYC 1 cut(s) 96
BceAI ACGGC 1 cut(s) 583
BfaI CTAG 1 cut(s) 618
BmgT120I GGNCC 2 cut(s) 92, 93
BmiI GGNNCC 1 cut(s) 94
BpuEI CTTGAG 1 cut(s) 566
BsaWI WCCGGW 1 cut(s) 241
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bse3DI GCAATG 2 cut(s) 46, 633
BseMI GCAATG 2 cut(s) 46, 633
BseRI GAGGAG 1 cut(s) 650
BseSI GKGCMC 2 cut(s) 96, 175
BshFI GGCC 1 cut(s) 94
BsiSI CCGG 1 cut(s) 242
BsnI GGCC 1 cut(s) 94
Bsp120I GGGCCC 1 cut(s) 92
Bsp1286I GDGCHC 2 cut(s) 96, 175
Bsp143I GATC 1 cut(s) 643
BspACI CCGC 1 cut(s) 169
BspANI GGCC 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 94
BsrBI CCGCTC 1 cut(s) 169
BsrDI GCAATG 2 cut(s) 46, 633
BssMI GATC 1 cut(s) 643
BstC8I GCNNGC 1 cut(s) 171
BstDEI CTNAG 1 cut(s) 404
BstKTI GATC 1 cut(s) 646
BstMBI GATC 1 cut(s) 643
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstSLI GKGCMC 2 cut(s) 96, 175
BsuRI GGCC 1 cut(s) 94
BtsIMutI CAGTG 1 cut(s) 15
Cac8I GCNNGC 1 cut(s) 171
Cfr13I GGNCC 2 cut(s) 92, 93
CviAII CATG 4 cut(s) 135, 187, 215, 382
CviJI RGCY 8 cut(s) 94, 122, 253, 267, 445, 479, 537, 598
CviKI_1 RGCY 8 cut(s) 94, 122, 253, 267, 445, 479, 537, 598
DdeI CTNAG 1 cut(s) 404
DpnI GATC 1 cut(s) 645
DpnII GATC 1 cut(s) 643
Eco24I GRGCYC 1 cut(s) 96
EcoO109I RGGNCCY 2 cut(s) 92, 93
EcoRI GAATTC 2 cut(s) 130, 433
EcoT38I GRGCYC 1 cut(s) 96
FaeI CATG 4 cut(s) 138, 190, 218, 385
FatI CATG 4 cut(s) 134, 186, 214, 381
FauI CCCGC 1 cut(s) 162
FriOI GRGCYC 1 cut(s) 96
FspBI CTAG 1 cut(s) 618
HaeIII GGCC 1 cut(s) 94
HapII CCGG 1 cut(s) 242
Hin1II CATG 4 cut(s) 138, 190, 218, 385
HindIII AAGCTT 1 cut(s) 477
HpaII CCGG 1 cut(s) 242
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 2 cut(s) 463, 655
Hpy8I GTNNAC 1 cut(s) 301
HpyAV CCTTC 5 cut(s) 112, 296, 366, 489, 545
HpyCH4IV ACGT 1 cut(s) 295
HpyCH4V TGCA 3 cut(s) 214, 239, 638
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 1 cut(s) 404
HpySE526I ACGT 1 cut(s) 295
Hsp92II CATG 4 cut(s) 138, 190, 218, 385
Kzo9I GATC 1 cut(s) 643
LmnI GCTCC 3 cut(s) 166, 179, 510
LpnPI CCDG 1 cut(s) 255
MaeI CTAG 1 cut(s) 618
MaeII ACGT 1 cut(s) 295
MaeIII GTNAC 1 cut(s) 224
MalI GATC 1 cut(s) 645
MbiI CCGCTC 1 cut(s) 169
MboI GATC 1 cut(s) 643
MboII GAAGA 5 cut(s) 76, 158, 167, 339, 425
MfeI CAATTG 1 cut(s) 59
MhlI GDGCHC 2 cut(s) 96, 175
MluCI AATT 6 cut(s) 59, 130, 257, 281, 309, 433
MnlI CCTC 1 cut(s) 313
MseI TTAA 2 cut(s) 98, 420
MspI CCGG 1 cut(s) 242
MunI CAATTG 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 179
NdeII GATC 1 cut(s) 643
NlaIII CATG 4 cut(s) 138, 190, 218, 385
NlaIV GGNNCC 1 cut(s) 94
PsiI TTATAA 1 cut(s) 546
PspN4I GGNNCC 1 cut(s) 94
PspOMI GGGCCC 1 cut(s) 92
PspPI GGNCC 2 cut(s) 92, 93
SaqAI TTAA 2 cut(s) 98, 420
Sau3AI GATC 1 cut(s) 643
Sau96I GGNCC 2 cut(s) 92, 93
SduI GDGCHC 2 cut(s) 96, 175
SetI ASST 6 cut(s) 269, 298, 447, 481, 539, 556
SmlI CTYRAG 1 cut(s) 581
SmoI CTYRAG 1 cut(s) 581
Sse9I AATT 6 cut(s) 59, 130, 257, 281, 309, 433
SsiI CCGC 1 cut(s) 169
SspMI CTAG 1 cut(s) 618
TaiI ACGT 1 cut(s) 298
TaqI TCGA 2 cut(s) 200, 375
TasI AATT 6 cut(s) 59, 130, 257, 281, 309, 433
Tru1I TTAA 2 cut(s) 98, 420
Tru9I TTAA 2 cut(s) 98, 420
TscAI CASTG 1 cut(s) 15
TspDTI ATGAA 7 cut(s) 123, 159, 219, 231, 339, 378, 489
TspRI CASTG 1 cut(s) 15
XapI RAATTY 3 cut(s) 130, 281, 433
XspI CTAG 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.