Rh6AG422100

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000278
Physical Location & Seq
Reverse (-)
61524128 .. 61529902
5775 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG422100.1

Sequence Viewer

Length: 741 bp
ATGCCTGAACCAGTTTCCCCCGACGATATTTGTCATCCGCAACTAGGATGCGACCAAGACTATAATCTAAACGCTCCATCATGGGAAATCGAGAAGTTCAATGGAAAGAACAATTTCAAGATGTGGCAAGTTGAGGTATGTGATGTCCTAGCCGTTGAGGGTTTAGTTGAAGCTCTGGATGGGAAACCCAGTTACATGAAGCAAGCCGAGTGGAAGGTGCTTGATCAGAAAGCTTGTTCGATACTTCGGTTCTATATGTCCAAAAAGGTCAAGCAGAAAGTCATGCCAGCGAAATCCGCGAAGGAGATTTTGGAAAAGCTTGGGAAAATTTATTTGAATAACTCATTTAATGAGCGAATTCTCAAGATGCAGCTTTACAAGTTGAGGATGGATGAGAGGACTACTAGGTATGATGTGGAGTTTAGCGACGAAGACAAGGTTGCGATTCTTCTGGCCTCGCTTCCTGAAAAGTATAATGATCTAGTGATGGGTATGATGTATGGGAAGGACAGTGTAGTTTTTGATCATGTCGTATCTTTGCTTCTATATAAGGAGAGTAAGAATGCTGAAGCTAAAGATCGAGTGACAAAAGATCAGAGTTGTGGTGGTTCGAAGAGTTCCAGGTCTTCTAACTCGAGAAATTATGAAGGCAAGGAGTGTTATTACTGTCATGAAATTGGACACATTCTGAATCACTGTCCCAAGCTGCAGCTGAAGAAGAGAAATAAGAATTTGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve zf-CCHC

Protein Analysis

246

Amino Acids

28.46

Weight (kDa)

8.47

Isoelectric Point (pI)

62.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 64 - 189 1.2e-12 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 299
AciI CCGC 2 cut(s) 38, 297
AcsI RAATTY 3 cut(s) 327, 357, 730
AcuI CTGAAG 2 cut(s) 588, 734
AfiI CCNNNNNNNGG 1 cut(s) 44
AgsI TTSAA 4 cut(s) 100, 118, 170, 337
AjnI CCWGG 1 cut(s) 620
AjuI GAANNNNNNNTTGG 2 cut(s) 293, 325
AluBI AGCT 7 cut(s) 173, 233, 319, 373, 572, 706, 712
AluI AGCT 7 cut(s) 173, 233, 319, 373, 572, 706, 712
Ama87I CYCGRG 1 cut(s) 634
AoxI GGCC 1 cut(s) 453
ApeKI GCWGC 3 cut(s) 370, 706, 709
ApoI RAATTY 3 cut(s) 327, 357, 730
Asp700I GAANNNNTTC 2 cut(s) 113, 734
AsuII TTCGAA 1 cut(s) 611
AvaI CYCGRG 1 cut(s) 634
BaeI ACNNNNGTAYC 2 cut(s) 233, 266
BarI GAAGNNNNNNTAC 2 cut(s) 525, 557
BbsI GAAGAC 2 cut(s) 438, 618
BbvI GCAGC 3 cut(s) 382, 693, 721
BccI CCATC 4 cut(s) 85, 173, 382, 481
BceAI ACGGC 1 cut(s) 137
BciT130I CCWGG 1 cut(s) 622
BclI TGATCA 2 cut(s) 223, 523
BfaI CTAG 4 cut(s) 44, 149, 405, 482
BfmI CTRYAG 1 cut(s) 707
BisI GCNGC 3 cut(s) 371, 707, 710
BlsI GCNGC 3 cut(s) 372, 708, 711
Bme1390I CCNGG 1 cut(s) 622
BmeT110I CYCGRG 1 cut(s) 634
BmrFI CCNGG 1 cut(s) 622
BmrI ACTGGG 1 cut(s) 183
BmsI GCATC 2 cut(s) 38, 357
BmuI ACTGGG 1 cut(s) 183
BpiI GAAGAC 2 cut(s) 438, 618
Bpu14I TTCGAA 1 cut(s) 611
BpuEI CTTGAG 1 cut(s) 347
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse1I ACTGG 2 cut(s) 11, 189
BseBI CCWGG 1 cut(s) 622
BseGI GGATG 5 cut(s) 34, 53, 184, 393, 397
BseLI CCNNNNNNNGG 1 cut(s) 44
BseNI ACTGG 2 cut(s) 11, 189
BseXI GCAGC 3 cut(s) 382, 693, 721
Bsh1236I CGCG 1 cut(s) 299
BshFI GGCC 1 cut(s) 455
BsiHKCI CYCGRG 1 cut(s) 634
BslFI GGGAC 1 cut(s) 684
BslI CCNNNNNNNGG 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 684
BsmI GAATGC 1 cut(s) 568
BsnI GGCC 1 cut(s) 455
BsoBI CYCGRG 1 cut(s) 634
Bsp119I TTCGAA 1 cut(s) 611
Bsp143I GATC 5 cut(s) 223, 478, 523, 577, 592
BspACI CCGC 2 cut(s) 38, 297
BspANI GGCC 1 cut(s) 455
BspFNI CGCG 1 cut(s) 299
BspHI TCATGA 1 cut(s) 670
BspMAI CTGCAG 1 cut(s) 711
BspT104I TTCGAA 1 cut(s) 611
BsrI ACTGG 2 cut(s) 11, 189
BssMI GATC 5 cut(s) 223, 478, 523, 577, 592
Bst2UI CCWGG 1 cut(s) 622
Bst4CI ACNGT 3 cut(s) 512, 668, 698
Bst6I CTCTTC 2 cut(s) 608, 713
BstBI TTCGAA 1 cut(s) 611
BstC8I GCNNGC 2 cut(s) 204, 288
BstF5I GGATG 5 cut(s) 34, 53, 184, 393, 397
BstFNI CGCG 1 cut(s) 299
BstKTI GATC 5 cut(s) 226, 481, 526, 580, 595
BstMBI GATC 5 cut(s) 223, 478, 523, 577, 592
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNI CCWGG 1 cut(s) 622
BstSCI CCNGG 1 cut(s) 620
BstSFI CTRYAG 1 cut(s) 707
BstUI CGCG 1 cut(s) 299
BstV1I GCAGC 3 cut(s) 382, 693, 721
BstV2I GAAGAC 2 cut(s) 438, 618
BsuRI GGCC 1 cut(s) 455
BtsCI GGATG 5 cut(s) 34, 53, 184, 393, 397
BtsIMutI CAGTG 2 cut(s) 517, 694
Cac8I GCNNGC 2 cut(s) 204, 288
CciI TCATGA 1 cut(s) 670
CspCI CAANNNNNGTGG 2 cut(s) 191, 226
CviAII CATG 5 cut(s) 81, 196, 283, 527, 671
DpnI GATC 5 cut(s) 225, 480, 525, 579, 594
DpnII GATC 5 cut(s) 223, 478, 523, 577, 592
Eam1104I CTCTTC 2 cut(s) 608, 713
EarI CTCTTC 2 cut(s) 608, 713
Eco57I CTGAAG 2 cut(s) 588, 734
Eco88I CYCGRG 1 cut(s) 634
EcoRI GAATTC 1 cut(s) 357
EcoRII CCWGG 1 cut(s) 620
FaeI CATG 5 cut(s) 84, 199, 286, 530, 674
FaqI GGGAC 1 cut(s) 684
FatI CATG 5 cut(s) 80, 195, 282, 526, 670
FbaI TGATCA 2 cut(s) 223, 523
Fnu4HI GCNGC 3 cut(s) 371, 707, 710
FokI GGATG 5 cut(s) 21, 60, 191, 400, 404
Fsp4HI GCNGC 3 cut(s) 371, 707, 710
FspBI CTAG 4 cut(s) 44, 149, 405, 482
GluI GCNGC 3 cut(s) 371, 707, 710
HaeIII GGCC 1 cut(s) 455
Hin1II CATG 5 cut(s) 84, 199, 286, 530, 674
HindIII AAGCTT 2 cut(s) 231, 317
HinfI GANTC 2 cut(s) 445, 691
Hpy188I TCNGA 3 cut(s) 228, 597, 690
Hpy188III TCNNGA 7 cut(s) 91, 118, 176, 364, 464, 636, 671
Hpy99I CGWCG 2 cut(s) 26, 431
HpyAV CCTTC 4 cut(s) 208, 295, 499, 641
HpyCH4III ACNGT 3 cut(s) 512, 668, 698
HpyCH4V TGCA 2 cut(s) 370, 709
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
Hsp92II CATG 5 cut(s) 84, 199, 286, 530, 674
Ksp22I TGATCA 2 cut(s) 223, 523
Kzo9I GATC 5 cut(s) 223, 478, 523, 577, 592
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 9 cut(s) 18, 24, 161, 202, 300, 437, 477, 607, 634
Lsp1109I GCAGC 3 cut(s) 382, 693, 721
LweI GCATC 2 cut(s) 38, 357
MaeI CTAG 4 cut(s) 44, 149, 405, 482
MaeIII GTNAC 2 cut(s) 191, 583
MalI GATC 5 cut(s) 225, 480, 525, 579, 594
MboI GATC 5 cut(s) 223, 478, 523, 577, 592
MboII GAAGA 6 cut(s) 440, 443, 618, 625, 727, 730
MluCI AATT 6 cut(s) 112, 327, 357, 640, 675, 730
MnlI CCTC 5 cut(s) 127, 151, 378, 390, 466
MroXI GAANNNNTTC 2 cut(s) 113, 734
MseI TTAA 1 cut(s) 348
MspA1I CMGCKG 1 cut(s) 712
MspR9I CCNGG 1 cut(s) 622
Mva1269I GAATGC 1 cut(s) 568
MvaI CCWGG 1 cut(s) 622
MvnI CGCG 1 cut(s) 299
MwoI GCNNNNNNNGC 1 cut(s) 296
NdeII GATC 5 cut(s) 223, 478, 523, 577, 592
NlaIII CATG 5 cut(s) 84, 199, 286, 530, 674
NmeAIII GCCGAG 1 cut(s) 232
NmuCI GTSAC 1 cut(s) 583
NspV TTCGAA 1 cut(s) 611
PaeR7I CTCGAG 1 cut(s) 634
PagI TCATGA 1 cut(s) 670
PctI GAATGC 1 cut(s) 568
PdmI GAANNNNTTC 2 cut(s) 113, 734
PfeI GAWTC 2 cut(s) 445, 691
PkrI GCNGC 3 cut(s) 372, 708, 711
Psp6I CCWGG 1 cut(s) 620
PspGI CCWGG 1 cut(s) 620
PstI CTGCAG 1 cut(s) 711
PvuII CAGCTG 1 cut(s) 712
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 3 cut(s) 371, 707, 710
Sau3AI GATC 5 cut(s) 223, 478, 523, 577, 592
ScrFI CCNGG 1 cut(s) 622
SfaNI GCATC 2 cut(s) 38, 357
SfcI CTRYAG 1 cut(s) 707
Sfr274I CTCGAG 1 cut(s) 634
SfuI TTCGAA 1 cut(s) 611
SlaI CTCGAG 1 cut(s) 634
SmlI CTYRAG 2 cut(s) 362, 634
SmoI CTYRAG 2 cut(s) 362, 634
Sse9I AATT 6 cut(s) 112, 327, 357, 640, 675, 730
SsiI CCGC 2 cut(s) 38, 297
SspMI CTAG 4 cut(s) 44, 149, 405, 482
StyD4I CCNGG 1 cut(s) 620
TaaI ACNGT 3 cut(s) 512, 668, 698
TaqI TCGA 5 cut(s) 90, 239, 580, 611, 635
TasI AATT 6 cut(s) 112, 327, 357, 640, 675, 730
TfiI GAWTC 2 cut(s) 445, 691
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TscAI CASTG 2 cut(s) 517, 701
TseFI GTSAC 1 cut(s) 583
TseI GCWGC 3 cut(s) 370, 706, 709
Tsp45I GTSAC 1 cut(s) 583
TspDTI ATGAA 3 cut(s) 212, 660, 687
TspRI CASTG 2 cut(s) 517, 701
XapI RAATTY 3 cut(s) 327, 357, 730
XhoI CTCGAG 1 cut(s) 634
XmnI GAANNNNTTC 2 cut(s) 113, 734
XspI CTAG 4 cut(s) 44, 149, 405, 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.