MD15G1021000.v1.1

Belongs to the thioredoxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000278
Physical Location & Seq
Forward (+)
1213265 .. 1216601
3337 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1021000.v1.1.491

Sequence Viewer

Length: 684 bp
ATGTCAGACGGGCAAGATGAGATTCCTTTTGGAAGCAGCTCCGGGTTTGCAAGAATTACGGTGCAAAATGCAAAGTTCGAAATGGAAAAGTTTGATGGCACAAACAACTTCGGGATGTGGCAATATGAGGTCAAAGATGTGTTGGCTCAACAAGATCTACTTGCCGCTTTGGGAGAAAAGCCAGGAGCTATGTCGAAGCCGGAATGGGAGAAATTAAATTTGTGGGCTTGCTCTTCAATTCGGTTGTGTCTTGCAAAAACTCAAAAGTATTTTGTGATGCAGGAGACATTGGCAAGTGTGTTGTGGCAAAAATTGGAAGACAAGTATATGATGAAGAGTGCAGAGAACCGGCTACACTTGAAGAAAAAACTCTACAGCTTCCAATACAAAGAAGGGCTTCAGGTTGTGGTCGACTTCACGGCTATATGGTGTGGACCTTGCCGGTTCATTGCACCCATCTTCGCGGAGTTGGCTAGGAAGAACCCGGAAGTGACATTCCTAAAGGTGGACGTGGATGAGCTGAAGACTGTTACCGAGGAGTGGGGCGTGGAGGCAATGCCGACCTTCTTGATCCTCAAGGAAGGCAAGGTAGTTGACAAGGTTGTGGGTGCTAAGAAAGAAGAGTTACAGCTCAAAGTTGTGAAGCATGCCACTCCAGCTGATGTCGCAACTGCTTCTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04621 ko05418 map04621 map05418
Pfam Domains
Protein Families
Thioredoxin

Protein Analysis

228

Amino Acids

25.67

Weight (kDa)

6.21

Isoelectric Point (pI)

24.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 48 - 135 2.8e-07 gag-polypeptide of LTR copia-type
Thioredoxin PF00085 133 - 210 1.3e-24 Thioredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 411
AccII CGCG 1 cut(s) 464
AciI CCGC 2 cut(s) 165, 464
AclWI GGATC 1 cut(s) 565
AcsI RAATTY 1 cut(s) 217
AcuI CTGAAG 2 cut(s) 383, 542
AfiI CCNNNNNNNGG 2 cut(s) 505, 540
AgsI TTSAA 2 cut(s) 237, 361
AjiI CACGTC 1 cut(s) 511
AjnI CCWGG 1 cut(s) 181
AluBI AGCT 6 cut(s) 39, 188, 378, 520, 631, 659
AluI AGCT 6 cut(s) 39, 188, 378, 520, 631, 659
Alw26I GTCTC 1 cut(s) 278
AlwI GGATC 1 cut(s) 565
ApeKI GCWGC 1 cut(s) 36
ApoI RAATTY 1 cut(s) 217
Asp700I GAANNNNTTC 1 cut(s) 396
AspS9I GGNCC 1 cut(s) 434
AsuC2I CCSGG 2 cut(s) 43, 485
AsuII TTCGAA 1 cut(s) 78
AvaII GGWCC 1 cut(s) 434
BbsI GAAGAC 2 cut(s) 324, 530
BbvI GCAGC 1 cut(s) 48
BccI CCATC 2 cut(s) 89, 464
BceAI ACGGC 1 cut(s) 435
BciT130I CCWGG 1 cut(s) 183
BcnI CCSGG 2 cut(s) 43, 485
BcoDI GTCTC 1 cut(s) 278
BfaI CTAG 1 cut(s) 474
BfmI CTRYAG 1 cut(s) 373
BglII AGATCT 1 cut(s) 154
BisI GCNGC 2 cut(s) 37, 165
BlsI GCNGC 2 cut(s) 38, 166
Bme1390I CCNGG 3 cut(s) 43, 183, 485
Bme18I GGWCC 1 cut(s) 434
BmgBI CACGTC 1 cut(s) 511
BmgT120I GGNCC 1 cut(s) 434
BmrFI CCNGG 3 cut(s) 43, 183, 485
BmsI GCATC 1 cut(s) 267
BpiI GAAGAC 2 cut(s) 324, 530
BpmI CTGGAG 1 cut(s) 639
Bpu14I TTCGAA 1 cut(s) 78
BpuEI CTTGAG 1 cut(s) 560
BpuMI CCSGG 2 cut(s) 43, 485
BsaJI CCNNGG 1 cut(s) 534
Bsc4I CCNNNNNNNGG 2 cut(s) 505, 540
Bse118I RCCGGY 2 cut(s) 348, 441
Bse3DI GCAATG 2 cut(s) 447, 561
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 534
BseGI GGATG 2 cut(s) 120, 520
BseLI CCNNNNNNNGG 2 cut(s) 505, 540
BseMI GCAATG 2 cut(s) 447, 561
BseRI GAGGAG 1 cut(s) 551
BseXI GCAGC 1 cut(s) 48
BsgI GTGCAG 1 cut(s) 360
Bsh1236I CGCG 1 cut(s) 464
BsiSI CCGG 5 cut(s) 42, 200, 349, 442, 485
BslI CCNNNNNNNGG 2 cut(s) 505, 540
BsmAI GTCTC 1 cut(s) 278
Bsp119I TTCGAA 1 cut(s) 78
Bsp143I GATC 2 cut(s) 154, 570
BspACI CCGC 2 cut(s) 165, 464
BspFNI CGCG 1 cut(s) 464
BspPI GGATC 1 cut(s) 565
BspQI GCTCTTC 1 cut(s) 238
BspT104I TTCGAA 1 cut(s) 78
BsrDI GCAATG 2 cut(s) 447, 561
BsrFI RCCGGY 2 cut(s) 348, 441
BssAI RCCGGY 2 cut(s) 348, 441
BssECI CCNNGG 1 cut(s) 534
BssMI GATC 2 cut(s) 154, 570
Bst2UI CCWGG 1 cut(s) 183
Bst4CI ACNGT 2 cut(s) 61, 529
Bst6I CTCTTC 3 cut(s) 238, 329, 615
BstBI TTCGAA 1 cut(s) 78
BstC8I GCNNGC 2 cut(s) 229, 648
BstDEI CTNAG 1 cut(s) 612
BstF5I GGATG 2 cut(s) 120, 520
BstFNI CGCG 1 cut(s) 464
BstKTI GATC 2 cut(s) 157, 573
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 2 cut(s) 154, 570
BstMWI GCNNNNNNNGC 3 cut(s) 470, 656, 665
BstNI CCWGG 1 cut(s) 183
BstNSI RCATGY 1 cut(s) 650
BstSCI CCNGG 3 cut(s) 41, 181, 483
BstSFI CTRYAG 1 cut(s) 373
BstUI CGCG 1 cut(s) 464
BstV1I GCAGC 1 cut(s) 48
BstV2I GAAGAC 2 cut(s) 324, 530
BstX2I RGATCY 1 cut(s) 154
BstYI RGATCY 1 cut(s) 154
BtrI CACGTC 1 cut(s) 511
BtsCI GGATG 2 cut(s) 120, 520
Cac8I GCNNGC 2 cut(s) 229, 648
Cfr10I RCCGGY 2 cut(s) 348, 441
Cfr13I GGNCC 1 cut(s) 434
CviAII CATG 1 cut(s) 647
DdeI CTNAG 1 cut(s) 612
DpnI GATC 2 cut(s) 156, 572
DpnII GATC 2 cut(s) 154, 570
Eam1104I CTCTTC 3 cut(s) 238, 329, 615
EarI CTCTTC 3 cut(s) 238, 329, 615
Eco47I GGWCC 1 cut(s) 434
Eco57I CTGAAG 2 cut(s) 383, 542
EcoRII CCWGG 1 cut(s) 181
FaeI CATG 1 cut(s) 650
FaiI YATR 7 cut(s) 126, 191, 327, 329, 425, 427, 648
FalI AAGNNNNNCTT 4 cut(s) 144, 176, 381, 413
FatI CATG 1 cut(s) 646
FblI GTMKAC 1 cut(s) 411
Fnu4HI GCNGC 2 cut(s) 37, 165
FokI GGATG 2 cut(s) 127, 527
Fsp4HI GCNGC 2 cut(s) 37, 165
FspBI CTAG 1 cut(s) 474
GluI GCNGC 2 cut(s) 37, 165
GsuI CTGGAG 1 cut(s) 639
HapII CCGG 5 cut(s) 42, 200, 349, 442, 485
Hin1II CATG 1 cut(s) 650
HincII GTYRAC 2 cut(s) 412, 595
HindII GTYRAC 2 cut(s) 412, 595
HinfI GANTC 1 cut(s) 22
HpaII CCGG 5 cut(s) 42, 200, 349, 442, 485
Hpy166II GTNNAC 4 cut(s) 412, 434, 508, 595
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 2 cut(s) 112, 568
Hpy8I GTNNAC 4 cut(s) 412, 434, 508, 595
HpyAV CCTTC 3 cut(s) 386, 574, 575
HpyCH4III ACNGT 2 cut(s) 61, 529
HpyCH4IV ACGT 1 cut(s) 510
HpyCH4V TGCA 7 cut(s) 50, 64, 71, 254, 280, 341, 452
HpyF10VI GCNNNNNNNGC 3 cut(s) 470, 656, 665
HpyF3I CTNAG 1 cut(s) 612
HpySE526I ACGT 1 cut(s) 510
Hsp92II CATG 1 cut(s) 650
Kzo9I GATC 2 cut(s) 154, 570
LguI GCTCTTC 1 cut(s) 238
LmnI GCTCC 2 cut(s) 44, 185
Lsp1109I GCAGC 1 cut(s) 48
LweI GCATC 1 cut(s) 267
MaeI CTAG 1 cut(s) 474
MaeII ACGT 1 cut(s) 510
MaeIII GTNAC 3 cut(s) 490, 529, 624
MalI GATC 2 cut(s) 156, 572
MboI GATC 2 cut(s) 154, 570
MboII GAAGA 8 cut(s) 225, 329, 346, 373, 451, 490, 535, 632
MflI RGATCY 1 cut(s) 154
MluCI AATT 5 cut(s) 54, 212, 217, 237, 311
MnlI CCTC 4 cut(s) 121, 529, 544, 584
MroXI GAANNNNTTC 1 cut(s) 396
MseI TTAA 1 cut(s) 215
MspA1I CMGCKG 1 cut(s) 659
MspI CCGG 5 cut(s) 42, 200, 349, 442, 485
MspR9I CCNGG 3 cut(s) 43, 183, 485
MvaI CCWGG 1 cut(s) 183
MvnI CGCG 1 cut(s) 464
MwoI GCNNNNNNNGC 3 cut(s) 470, 656, 665
NciI CCSGG 2 cut(s) 43, 485
NdeII GATC 2 cut(s) 154, 570
NlaIII CATG 1 cut(s) 650
NmuCI GTSAC 1 cut(s) 490
NspI RCATGY 1 cut(s) 650
NspV TTCGAA 1 cut(s) 78
PaeI GCATGC 1 cut(s) 650
PciSI GCTCTTC 1 cut(s) 238
PdmI GAANNNNTTC 1 cut(s) 396
PfeI GAWTC 1 cut(s) 22
PkrI GCNGC 2 cut(s) 38, 166
Psp6I CCWGG 1 cut(s) 181
PspGI CCWGG 1 cut(s) 181
PspPI GGNCC 1 cut(s) 434
PsuI RGATCY 1 cut(s) 154
PvuII CAGCTG 1 cut(s) 659
SalI GTCGAC 1 cut(s) 410
SapI GCTCTTC 1 cut(s) 238
SaqAI TTAA 1 cut(s) 215
SatI GCNGC 2 cut(s) 37, 165
Sau3AI GATC 2 cut(s) 154, 570
Sau96I GGNCC 1 cut(s) 434
ScrFI CCNGG 3 cut(s) 43, 183, 485
SfaNI GCATC 1 cut(s) 267
SfcI CTRYAG 1 cut(s) 373
SfuI TTCGAA 1 cut(s) 78
SinI GGWCC 1 cut(s) 434
SmlI CTYRAG 1 cut(s) 575
SmoI CTYRAG 1 cut(s) 575
SphI GCATGC 1 cut(s) 650
Sse9I AATT 5 cut(s) 54, 212, 217, 237, 311
SsiI CCGC 2 cut(s) 165, 464
SspMI CTAG 1 cut(s) 474
StyD4I CCNGG 3 cut(s) 41, 181, 483
TaaI ACNGT 2 cut(s) 61, 529
TaiI ACGT 1 cut(s) 513
TaqI TCGA 3 cut(s) 78, 194, 411
TasI AATT 5 cut(s) 54, 212, 217, 237, 311
TauI GCSGC 1 cut(s) 167
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 1 cut(s) 215
Tru9I TTAA 1 cut(s) 215
TseFI GTSAC 1 cut(s) 490
TseI GCWGC 1 cut(s) 36
Tsp45I GTSAC 1 cut(s) 490
TspDTI ATGAA 2 cut(s) 347, 436
VpaK11BI GGWCC 1 cut(s) 434
XapI RAATTY 1 cut(s) 217
XceI RCATGY 1 cut(s) 650
XmiI GTMKAC 1 cut(s) 411
XmnI GAANNNNTTC 1 cut(s) 396
XspI CTAG 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.