Rroxscaffold_5G00352730

Mitochondrial protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
30005876 .. 30007452
1577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00352730.1

Sequence Viewer

Length: 273 bp
ATGTTAAAGATGGGCAATACAAGCTATTTCAAGATTTTAAGAATGGAAGATATTTGCATCGAGACTAATCTTGGTTACCGGATGACATTGAAGGATGTGAGGCACGTTTCGATTTGTGTATCAACCGTCGCAAGTGCTCTTAATAGACAATGTTTCCATCAATATATTGGTGATGGAAAGTGGAAGCTTGCAAACAGGTCATTGGATGCCGCTAAAGGAGAGCTTTGTCATTCCCCGTACAAGACACATAGCTTGTATACAGAGATGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

90

Amino Acids

10.33

Weight (kDa)

8.98

Isoelectric Point (pI)

25.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 257
AciI CCGC 1 cut(s) 210
AfaI GTAC 1 cut(s) 239
AgsI TTSAA 2 cut(s) 31, 91
AluBI AGCT 4 cut(s) 24, 187, 223, 252
AluI AGCT 4 cut(s) 24, 187, 223, 252
Alw21I GWGCWC 1 cut(s) 139
Alw26I GTCTC 1 cut(s) 56
AsuHPI GGTGA 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 139
BccI CCATC 3 cut(s) 4, 165, 167
BcoDI GTCTC 1 cut(s) 56
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
BmsI GCATC 2 cut(s) 66, 196
BsaWI WCCGGW 1 cut(s) 78
BseGI GGATG 3 cut(s) 87, 100, 211
BsiHKAI GWGCWC 1 cut(s) 139
BsiSI CCGG 1 cut(s) 79
BsmAI GTCTC 1 cut(s) 56
Bsp1286I GDGCHC 1 cut(s) 139
BspACI CCGC 1 cut(s) 210
BssNAI GTATAC 1 cut(s) 258
Bst1107I GTATAC 1 cut(s) 258
Bst4CI ACNGT 1 cut(s) 127
BstC8I GCNNGC 1 cut(s) 189
BstEII GGTNACC 1 cut(s) 74
BstF5I GGATG 3 cut(s) 87, 100, 211
BstMAI GTCTC 1 cut(s) 56
BstMWI GCNNNNNNNGC 1 cut(s) 21
BstPI GGTNACC 1 cut(s) 74
BstZ17I GTATAC 1 cut(s) 258
BtsCI GGATG 3 cut(s) 87, 100, 211
Cac8I GCNNGC 1 cut(s) 189
Csp6I GTAC 1 cut(s) 238
CviJI RGCY 4 cut(s) 24, 187, 223, 252
CviKI_1 RGCY 4 cut(s) 24, 187, 223, 252
CviQI GTAC 1 cut(s) 238
Eco91I GGTNACC 1 cut(s) 74
EcoO65I GGTNACC 1 cut(s) 74
FaiI YATR 3 cut(s) 165, 249, 258
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FblI GTMKAC 1 cut(s) 257
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 3 cut(s) 94, 107, 218
Fsp4HI GCNGC 1 cut(s) 210
GluI GCNGC 1 cut(s) 210
HapII CCGG 1 cut(s) 79
HindIII AAGCTT 1 cut(s) 185
HpaII CCGG 1 cut(s) 79
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 1 cut(s) 258
Hpy188III TCNNGA 2 cut(s) 31, 61
Hpy8I GTNNAC 1 cut(s) 258
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 1 cut(s) 85
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 2 cut(s) 57, 191
HpyF10VI GCNNNNNNNGC 1 cut(s) 21
HpySE526I ACGT 1 cut(s) 105
LpnPI CCDG 2 cut(s) 92, 181
LweI GCATC 2 cut(s) 66, 196
MaeII ACGT 1 cut(s) 105
MaeIII GTNAC 1 cut(s) 74
MboII GAAGA 1 cut(s) 59
MhlI GDGCHC 1 cut(s) 139
MnlI CCTC 1 cut(s) 93
MseI TTAA 3 cut(s) 5, 38, 141
MspI CCGG 1 cut(s) 79
MwoI GCNNNNNNNGC 1 cut(s) 21
PkrI GCNGC 1 cut(s) 211
PspEI GGTNACC 1 cut(s) 74
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
SaqAI TTAA 3 cut(s) 5, 38, 141
SatI GCNGC 1 cut(s) 210
SduI GDGCHC 1 cut(s) 139
SetI ASST 6 cut(s) 26, 108, 189, 200, 225, 254
SfaNI GCATC 2 cut(s) 66, 196
SsiI CCGC 1 cut(s) 210
TaaI ACNGT 1 cut(s) 127
TaiI ACGT 1 cut(s) 108
TaqI TCGA 2 cut(s) 60, 110
TauI GCSGC 1 cut(s) 212
Tru1I TTAA 3 cut(s) 5, 38, 141
Tru9I TTAA 3 cut(s) 5, 38, 141
XcmI CCANNNNNNNNNTGG 1 cut(s) 164
XmiI GTMKAC 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.