Rh4CG191400

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000278
Physical Location & Seq
Forward (+)
41147271 .. 41148829
1559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG191400.1

Sequence Viewer

Length: 525 bp
ATGGGGCATAACATAGAGACAGGTGAACATGCTGAAATTCTACTTCAAAGACTACCTGTTTCGTATGATCAACTTATCATCAACTTAACCAACAATTTAGAAATAGTCTTCGATGATATTGCAGCTGCAGTTCTTGAAGAAGAAAGTCTGCGCAAGAGCAAAGAAGATAGATTGGGAGGGTCACAGCAGGCCGAAGCTTTGATGATAACGAGAGGGAGATCAATGGAACGTGGCCCCAGTGGGAGTCAAAATCAGAGTAGACCAAAATCCAGAAGTAAGAAGAATGTCAAGTGTCATCATTGTGGCAAGAAAGATCACTACAAAAGGGAGTGTTGGCATCTCAAGAAGAACGAAGAAACCAAAGGAAAAGGTCCTGAGTCGTTAAGAGCTCAGGGTTGTGTAGCAAGCACCTCAGATGATGGTGAAATTTTATACAGCGAGGCAACAATAGTTACTGGAGGCAGGAGAAAATTTGCTAATATTTGGCTTATGAACTCAGGAGCAACATGGCATATGACCCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
rve

Protein Analysis

174

Amino Acids

19.52

Weight (kDa)

8.67

Isoelectric Point (pI)

66.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 152
AccI GTMKAC 1 cut(s) 259
AcsI RAATTY 3 cut(s) 36, 426, 470
AgsI TTSAA 2 cut(s) 47, 137
AluBI AGCT 3 cut(s) 125, 197, 389
AluI AGCT 3 cut(s) 125, 197, 389
Alw21I GWGCWC 1 cut(s) 391
Alw26I GTCTC 1 cut(s) 11
AoxI GGCC 2 cut(s) 189, 232
ApeKI GCWGC 2 cut(s) 122, 125
ApoI RAATTY 3 cut(s) 36, 426, 470
AspLEI GCGC 1 cut(s) 153
AspS9I GGNCC 2 cut(s) 233, 371
AsuHPI GGTGA 2 cut(s) 35, 434
AvaII GGWCC 1 cut(s) 371
BanII GRGCYC 1 cut(s) 391
BbsI GAAGAC 1 cut(s) 100
Bbv12I GWGCWC 1 cut(s) 391
BbvI GCAGC 2 cut(s) 112, 134
BccI CCATC 1 cut(s) 413
BcgI CGANNNNNNTGC 2 cut(s) 101, 135
BclI TGATCA 1 cut(s) 67
BcoDI GTCTC 1 cut(s) 11
BfmI CTRYAG 1 cut(s) 126
BisI GCNGC 2 cut(s) 123, 126
BlsI GCNGC 2 cut(s) 124, 127
Bme18I GGWCC 1 cut(s) 371
BmgT120I GGNCC 2 cut(s) 233, 371
BmiI GGNNCC 1 cut(s) 235
BmrI ACTGGG 1 cut(s) 231
BmsI GCATC 1 cut(s) 346
BmuI ACTGGG 1 cut(s) 231
BpiI GAAGAC 1 cut(s) 100
BpmI CTGGAG 1 cut(s) 477
Bpu10I CCTNAGC 1 cut(s) 390
BpuEI CTTGAG 1 cut(s) 326
Bse1I ACTGG 2 cut(s) 237, 460
BseMII CTCAG 4 cut(s) 366, 404, 426, 510
BseNI ACTGG 2 cut(s) 237, 460
BseXI GCAGC 2 cut(s) 112, 134
BshFI GGCC 2 cut(s) 191, 234
BsiHKAI GWGCWC 1 cut(s) 391
BsmAI GTCTC 1 cut(s) 11
BsnI GGCC 2 cut(s) 191, 234
Bsp1286I GDGCHC 1 cut(s) 391
Bsp143I GATC 3 cut(s) 67, 218, 313
BspANI GGCC 2 cut(s) 191, 234
BspCNI CTCAG 4 cut(s) 367, 403, 425, 509
BspLI GGNNCC 1 cut(s) 235
BspMAI CTGCAG 1 cut(s) 130
BsrI ACTGG 2 cut(s) 237, 460
BssMI GATC 3 cut(s) 67, 218, 313
BstC8I GCNNGC 2 cut(s) 189, 406
BstDEI CTNAG 4 cut(s) 375, 390, 412, 496
BstHHI GCGC 1 cut(s) 153
BstKTI GATC 3 cut(s) 70, 221, 316
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 3 cut(s) 67, 218, 313
BstNSI RCATGY 1 cut(s) 32
BstSFI CTRYAG 1 cut(s) 126
BstV1I GCAGC 2 cut(s) 112, 134
BstV2I GAAGAC 1 cut(s) 100
BsuRI GGCC 2 cut(s) 191, 234
BtsIMutI CAGTG 1 cut(s) 244
Cac8I GCNNGC 2 cut(s) 189, 406
CfoI GCGC 1 cut(s) 153
Cfr13I GGNCC 2 cut(s) 233, 371
CviAII CATG 2 cut(s) 29, 507
CviJI RGCY 6 cut(s) 125, 191, 197, 234, 389, 487
CviKI_1 RGCY 6 cut(s) 125, 191, 197, 234, 389, 487
DdeI CTNAG 4 cut(s) 375, 390, 412, 496
DpnI GATC 3 cut(s) 69, 220, 315
DpnII GATC 3 cut(s) 67, 218, 313
Ecl136II GAGCTC 1 cut(s) 389
Eco24I GRGCYC 1 cut(s) 391
Eco47I GGWCC 1 cut(s) 371
Eco53kI GAGCTC 1 cut(s) 389
EcoICRI GAGCTC 1 cut(s) 389
EcoO109I RGGNCCY 1 cut(s) 371
EcoT38I GRGCYC 1 cut(s) 391
FaeI CATG 2 cut(s) 32, 510
FaiI YATR 9 cut(s) 9, 14, 30, 66, 433, 491, 508, 513, 515
FatI CATG 2 cut(s) 28, 506
FauNDI CATATG 1 cut(s) 513
FbaI TGATCA 1 cut(s) 67
FblI GTMKAC 1 cut(s) 259
Fnu4HI GCNGC 2 cut(s) 123, 126
FriOI GRGCYC 1 cut(s) 391
Fsp4HI GCNGC 2 cut(s) 123, 126
FspI TGCGCA 1 cut(s) 152
GlaI GCGC 1 cut(s) 152
GluI GCNGC 2 cut(s) 123, 126
GsuI CTGGAG 1 cut(s) 477
HaeIII GGCC 2 cut(s) 191, 234
HhaI GCGC 1 cut(s) 153
Hin1II CATG 2 cut(s) 32, 510
Hin6I GCGC 1 cut(s) 151
HinP1I GCGC 1 cut(s) 151
HindIII AAGCTT 1 cut(s) 195
HinfI GANTC 2 cut(s) 244, 377
HphI GGTGA 2 cut(s) 35, 434
Hpy166II GTNNAC 2 cut(s) 26, 260
Hpy188I TCNGA 2 cut(s) 255, 415
Hpy188III TCNNGA 5 cut(s) 134, 270, 343, 374, 498
Hpy8I GTNNAC 2 cut(s) 26, 260
HpyCH4IV ACGT 1 cut(s) 229
HpyCH4V TGCA 2 cut(s) 122, 128
HpyF3I CTNAG 4 cut(s) 375, 390, 412, 496
HpySE526I ACGT 1 cut(s) 229
Hsp92II CATG 2 cut(s) 32, 510
HspAI GCGC 1 cut(s) 151
Ksp22I TGATCA 1 cut(s) 67
Kzo9I GATC 3 cut(s) 67, 218, 313
LmnI GCTCC 1 cut(s) 500
Lsp1109I GCAGC 2 cut(s) 112, 134
LweI GCATC 1 cut(s) 346
MaeII ACGT 1 cut(s) 229
MaeIII GTNAC 2 cut(s) 180, 451
MalI GATC 3 cut(s) 69, 220, 315
MboI GATC 3 cut(s) 67, 218, 313
MboII GAAGA 7 cut(s) 100, 149, 152, 176, 292, 358, 365
MhlI GDGCHC 1 cut(s) 391
MluCI AATT 4 cut(s) 36, 94, 426, 470
MlyI GAGTC 2 cut(s) 253, 386
MnlI CCTC 5 cut(s) 170, 206, 421, 433, 452
MseI TTAA 2 cut(s) 86, 383
MslI CAYNNNNRTG 1 cut(s) 300
MspA1I CMGCKG 1 cut(s) 125
NdeI CATATG 1 cut(s) 513
NdeII GATC 3 cut(s) 67, 218, 313
NlaIII CATG 2 cut(s) 32, 510
NlaIV GGNNCC 1 cut(s) 235
NmuCI GTSAC 1 cut(s) 180
NsbI TGCGCA 1 cut(s) 152
NspI RCATGY 1 cut(s) 32
PkrI GCNGC 2 cut(s) 124, 127
PleI GAGTC 2 cut(s) 252, 385
PpsI GAGTC 2 cut(s) 252, 385
PpuMI RGGWCCY 1 cut(s) 371
Psp124BI GAGCTC 1 cut(s) 391
Psp5II RGGWCCY 1 cut(s) 371
PspN4I GGNNCC 1 cut(s) 235
PspPI GGNCC 2 cut(s) 233, 371
PspPPI RGGWCCY 1 cut(s) 371
PstI CTGCAG 1 cut(s) 130
PvuII CAGCTG 1 cut(s) 125
RseI CAYNNNNRTG 1 cut(s) 300
SacI GAGCTC 1 cut(s) 391
SaqAI TTAA 2 cut(s) 86, 383
SatI GCNGC 2 cut(s) 123, 126
Sau3AI GATC 3 cut(s) 67, 218, 313
Sau96I GGNCC 2 cut(s) 233, 371
SchI GAGTC 2 cut(s) 253, 386
SduI GDGCHC 1 cut(s) 391
SetI ASST 8 cut(s) 25, 58, 127, 199, 232, 373, 391, 413
SfaNI GCATC 1 cut(s) 346
SfcI CTRYAG 1 cut(s) 126
SinI GGWCC 1 cut(s) 371
SmiMI CAYNNNNRTG 1 cut(s) 300
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
Sse9I AATT 4 cut(s) 36, 94, 426, 470
SspI AATATT 1 cut(s) 481
SstI GAGCTC 1 cut(s) 391
TaiI ACGT 1 cut(s) 232
TaqI TCGA 1 cut(s) 111
TasI AATT 4 cut(s) 36, 94, 426, 470
Tru1I TTAA 2 cut(s) 86, 383
Tru9I TTAA 2 cut(s) 86, 383
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 1 cut(s) 180
TseI GCWGC 2 cut(s) 122, 125
Tsp45I GTSAC 1 cut(s) 180
TspDTI ATGAA 1 cut(s) 506
TspRI CASTG 1 cut(s) 244
VpaK11BI GGWCC 1 cut(s) 371
XapI RAATTY 3 cut(s) 36, 426, 470
XceI RCATGY 1 cut(s) 32
XmiI GTMKAC 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.