RchiOBHm_Chr4g0442471

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000278
Physical Location & Seq
Forward (+)
64024639 .. 64025617
979 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41023

Sequence Viewer

Length: 921 bp
ATGATGTGGCACCGTAAGCTTGGCCACATGTCAGAAAGAGGTTTGAAGATTCTCGCTGAACAAAAGCTTCTTCCAGGGCTCAAAAAGGTTTCATTACCCTTTTGTGAGCATTGTGTCACTAGTAAGCAGCACAGATTAAAGTTCAGCAGTTCTAATGCTAGAAGCAAAGCTATCTTAGAAATGATCCATTCTGATGTTTGGCAAGCACCAGTTCTATCCCTAGGAGGTGCAAGATACTTTGTGTCTTTTATTGATGATTACTCCAGGAGATGTTGGGTGTATCCAATCAAAGTGAAGGCGGACGTGTTCCCAGTTTTCAAAGTATTCAAAGCGCGTGTGGAGCTTGAATCTGAAAAGAAGATCAAGTGTTTGAGGACGGACAATGGAGGAGAATATACCAGTAATGAATTTGATAACTTCTGTAAACAAGAAGGTATCAAGAGGCAGTTCACAGTGGCATACACTCCACAACAAAATGGAGTAGCAGAGCGGATGAACAGAACCTTGTTAGAACGGACAAGAGCGATGTTGAGGACTGCGGAGATGGCCAAGTCATTTTGGGCAGAAGCAGTGAAGACCACCTGTTATGTGATCAATCAGTCACCATCAACCGCAATTGATCTGAAGACGCCAATGGAGATGTGGACTGGTAAGCCAGCTGATTATTCTCGCTTACATACATTTGGAAGTCCTGTGTATGTTATGTACAACGCCCAAGAAACATCAAAACTGGATCCAAAATCCAGAAAATGCATTTTCTTAGGGTATGCTGATGGAGTTAAAGGGTACAGCCTGTGGGATCCCACTGCCCACAAGGTGATAATCAGCAGAGATGTAGAAGATAAGGTACAAGGAAAAGAAAATGATAGCACTTCAAAAGAGAAACTAGTGACTACAATAGTTCGAGTAGTCCTGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC PAH

Protein Analysis

306

Amino Acids

35.09

Weight (kDa)

9.49

Isoelectric Point (pI)

32.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
gag_pre-integrs PF13976 1 - 43 1.4e-13 GAG-pre-integrase domain
rve PF00665 60 - 156 7.8e-14 Integrase core domain
SH3_retrovirus PF25597 230 - 280 2.6e-20 Retroviral polymerase SH3-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 9
AccBSI CCGCTC 1 cut(s) 490
AccII CGCG 1 cut(s) 334
AciI CCGC 4 cut(s) 299, 490, 539, 612
AclWI GGATC 5 cut(s) 178, 728, 741, 794, 807
AcoI YGGCCR 2 cut(s) 22, 546
AcsI RAATTY 1 cut(s) 407
AcuI CTGAAG 1 cut(s) 644
AcyI GRCGYC 1 cut(s) 629
AdeI CACNNNGTG 1 cut(s) 817
AfaI GTAC 3 cut(s) 707, 788, 849
AflIII ACRYGT 2 cut(s) 27, 303
AgsI TTSAA 5 cut(s) 46, 319, 328, 347, 876
AhlI ACTAGT 2 cut(s) 119, 886
AjiI CACGTC 1 cut(s) 304
AjnI CCWGG 2 cut(s) 73, 263
AluBI AGCT 5 cut(s) 19, 67, 170, 343, 659
AluI AGCT 5 cut(s) 19, 67, 170, 343, 659
AlwI GGATC 5 cut(s) 178, 728, 741, 794, 807
AoxI GGCC 2 cut(s) 22, 546
ApeKI GCWGC 1 cut(s) 127
ApoI RAATTY 1 cut(s) 407
AspA2I CCTAGG 1 cut(s) 220
AspLEI GCGC 1 cut(s) 334
AsuHPI GGTGA 2 cut(s) 594, 829
AvrII CCTAGG 1 cut(s) 220
BalI TGGCCA 2 cut(s) 24, 548
BamHI GGATCC 2 cut(s) 733, 799
BanI GGYRCC 1 cut(s) 9
BanII GRGCYC 1 cut(s) 81
BarI GAAGNNNNNNTAC 2 cut(s) 831, 863
BbsI GAAGAC 2 cut(s) 581, 632
BbvI GCAGC 1 cut(s) 139
BccI CCATC 3 cut(s) 538, 613, 767
BciT130I CCWGG 2 cut(s) 75, 265
BciVI GTATCC 1 cut(s) 291
BclI TGATCA 1 cut(s) 591
BcuI ACTAGT 2 cut(s) 119, 886
BfaI CTAG 4 cut(s) 120, 159, 221, 887
BfuI GTATCC 1 cut(s) 291
BisI GCNGC 1 cut(s) 128
BlnI CCTAGG 1 cut(s) 220
BlsI GCNGC 1 cut(s) 129
Bme1390I CCNGG 2 cut(s) 75, 265
BmgBI CACGTC 1 cut(s) 304
BmiI GGNNCC 3 cut(s) 11, 735, 801
BmrFI CCNGG 2 cut(s) 75, 265
BmrI ACTGGG 1 cut(s) 305
BmuI ACTGGG 1 cut(s) 305
BpiI GAAGAC 2 cut(s) 581, 632
BpmI CTGGAG 1 cut(s) 247
BsaHI GRCGYC 1 cut(s) 629
BsaJI CCNNGG 2 cut(s) 74, 220
Bse1I ACTGG 5 cut(s) 209, 311, 399, 652, 735
BseBI CCWGG 2 cut(s) 75, 265
BseDI CCNNGG 2 cut(s) 74, 220
BseGI GGATG 1 cut(s) 498
BseNI ACTGG 5 cut(s) 209, 311, 399, 652, 735
BseRI GAGGAG 1 cut(s) 402
BseXI GCAGC 1 cut(s) 139
Bsh1236I CGCG 1 cut(s) 334
BshFI GGCC 2 cut(s) 24, 548
BshNI GGYRCC 1 cut(s) 9
BsnI GGCC 2 cut(s) 24, 548
Bsp1286I GDGCHC 1 cut(s) 81
Bsp1407I TGTACA 1 cut(s) 705
Bsp143I GATC 6 cut(s) 183, 360, 591, 619, 733, 799
BspACI CCGC 4 cut(s) 299, 490, 539, 612
BspANI GGCC 2 cut(s) 24, 548
BspFNI CGCG 1 cut(s) 334
BspLI GGNNCC 3 cut(s) 11, 735, 801
BspPI GGATC 5 cut(s) 178, 728, 741, 794, 807
BspT107I GGYRCC 1 cut(s) 9
BsrBI CCGCTC 1 cut(s) 490
BsrGI TGTACA 1 cut(s) 705
BsrI ACTGG 5 cut(s) 209, 311, 399, 652, 735
BssECI CCNNGG 2 cut(s) 74, 220
BssMI GATC 6 cut(s) 183, 360, 591, 619, 733, 799
BssNI GRCGYC 1 cut(s) 629
BssT1I CCWWGG 1 cut(s) 220
Bst2UI CCWGG 2 cut(s) 75, 265
Bst4CI ACNGT 2 cut(s) 14, 454
BstACI GRCGYC 1 cut(s) 629
BstAUI TGTACA 1 cut(s) 705
BstC8I GCNNGC 2 cut(s) 204, 657
BstDEI CTNAG 2 cut(s) 175, 760
BstF5I GGATG 1 cut(s) 498
BstFNI CGCG 1 cut(s) 334
BstHHI GCGC 1 cut(s) 334
BstKTI GATC 6 cut(s) 186, 363, 594, 622, 736, 802
BstMBI GATC 6 cut(s) 183, 360, 591, 619, 733, 799
BstMWI GCNNNNNNNGC 3 cut(s) 16, 340, 545
BstNI CCWGG 2 cut(s) 75, 265
BstNSI RCATGY 1 cut(s) 31
BstSCI CCNGG 2 cut(s) 73, 263
BstUI CGCG 1 cut(s) 334
BstV1I GCAGC 1 cut(s) 139
BstV2I GAAGAC 2 cut(s) 581, 632
BstX2I RGATCY 2 cut(s) 733, 799
BstYI RGATCY 2 cut(s) 733, 799
BsuI GTATCC 1 cut(s) 291
BsuRI GGCC 2 cut(s) 24, 548
BtgZI GCGATG 1 cut(s) 539
BtrI CACGTC 1 cut(s) 304
BtsCI GGATG 1 cut(s) 498
BtsI GCAGTG 2 cut(s) 576, 804
BtsIMutI CAGTG 3 cut(s) 459, 576, 804
Cac8I GCNNGC 2 cut(s) 204, 657
CfoI GCGC 1 cut(s) 334
CseI GACGC 1 cut(s) 637
Csp6I GTAC 3 cut(s) 706, 787, 848
CviAII CATG 1 cut(s) 28
CviQI GTAC 3 cut(s) 706, 787, 848
DdeI CTNAG 2 cut(s) 175, 760
DpnI GATC 6 cut(s) 185, 362, 593, 621, 735, 801
DpnII GATC 6 cut(s) 183, 360, 591, 619, 733, 799
DraIII CACNNNGTG 1 cut(s) 817
EaeI YGGCCR 2 cut(s) 22, 546
EciI GGCGGA 1 cut(s) 314
Eco130I CCWWGG 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 81
Eco57I CTGAAG 1 cut(s) 644
EcoRII CCWGG 2 cut(s) 73, 263
EcoT14I CCWWGG 1 cut(s) 220
EcoT22I ATGCAT 1 cut(s) 755
EcoT38I GRGCYC 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 220
FaeI CATG 1 cut(s) 31
FaiI YATR 8 cut(s) 29, 396, 460, 588, 678, 699, 704, 768
FatI CATG 1 cut(s) 27
FbaI TGATCA 1 cut(s) 591
Fnu4HI GCNGC 1 cut(s) 128
FokI GGATG 1 cut(s) 505
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 128
FspBI CTAG 4 cut(s) 120, 159, 221, 887
GlaI GCGC 1 cut(s) 333
GluI GCNGC 1 cut(s) 128
GsuI CTGGAG 1 cut(s) 247
HaeIII GGCC 2 cut(s) 24, 548
HgaI GACGC 1 cut(s) 637
HhaI GCGC 1 cut(s) 334
Hin1I GRCGYC 1 cut(s) 629
Hin1II CATG 1 cut(s) 31
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HindIII AAGCTT 2 cut(s) 17, 65
HinfI GANTC 2 cut(s) 49, 347
HphI GGTGA 2 cut(s) 594, 829
Hpy166II GTNNAC 3 cut(s) 425, 450, 645
Hpy188I TCNGA 4 cut(s) 34, 193, 352, 624
Hpy188III TCNNGA 3 cut(s) 439, 744, 913
Hpy8I GTNNAC 3 cut(s) 425, 450, 645
HpyAV CCTTC 2 cut(s) 289, 425
HpyCH4III ACNGT 2 cut(s) 14, 454
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 2 cut(s) 230, 753
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 340, 545
HpyF3I CTNAG 2 cut(s) 175, 760
HpySE526I ACGT 1 cut(s) 303
Hsp92I GRCGYC 1 cut(s) 629
Hsp92II CATG 1 cut(s) 31
HspAI GCGC 1 cut(s) 332
Ksp22I TGATCA 1 cut(s) 591
Kzo9I GATC 6 cut(s) 183, 360, 591, 619, 733, 799
LmnI GCTCC 1 cut(s) 340
Lsp1109I GCAGC 1 cut(s) 139
MaeI CTAG 4 cut(s) 120, 159, 221, 887
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 3 cut(s) 115, 600, 889
MalI GATC 6 cut(s) 185, 362, 593, 621, 735, 801
MbiI CCGCTC 1 cut(s) 490
MboI GATC 6 cut(s) 183, 360, 591, 619, 733, 799
MboII GAAGA 6 cut(s) 58, 62, 370, 586, 637, 851
MfeI CAATTG 1 cut(s) 615
MflI RGATCY 2 cut(s) 733, 799
MhlI GDGCHC 1 cut(s) 81
MlsI TGGCCA 2 cut(s) 24, 548
MluCI AATT 2 cut(s) 407, 615
MluNI TGGCCA 2 cut(s) 24, 548
MnlI CCTC 6 cut(s) 32, 218, 366, 380, 435, 525
Mox20I TGGCCA 2 cut(s) 24, 548
Mph1103I ATGCAT 1 cut(s) 755
MscI TGGCCA 2 cut(s) 24, 548
MseI TTAA 2 cut(s) 137, 780
MslI CAYNNNNRTG 1 cut(s) 192
Msp20I TGGCCA 2 cut(s) 24, 548
MspA1I CMGCKG 1 cut(s) 659
MspR9I CCNGG 2 cut(s) 75, 265
MunI CAATTG 1 cut(s) 615
MvaI CCWGG 2 cut(s) 75, 265
MvnI CGCG 1 cut(s) 334
MwoI GCNNNNNNNGC 3 cut(s) 16, 340, 545
NdeII GATC 6 cut(s) 183, 360, 591, 619, 733, 799
NlaIII CATG 1 cut(s) 31
NlaIV GGNNCC 3 cut(s) 11, 735, 801
NmuCI GTSAC 3 cut(s) 115, 600, 889
NsiI ATGCAT 1 cut(s) 755
NspI RCATGY 1 cut(s) 31
PciI ACATGT 1 cut(s) 27
PfeI GAWTC 2 cut(s) 49, 347
PfoI TCCNGGA 1 cut(s) 263
PkrI GCNGC 1 cut(s) 129
PscI ACATGT 1 cut(s) 27
Psp6I CCWGG 2 cut(s) 73, 263
PspGI CCWGG 2 cut(s) 73, 263
PspN4I GGNNCC 3 cut(s) 11, 735, 801
PsuI RGATCY 2 cut(s) 733, 799
PvuII CAGCTG 1 cut(s) 659
RsaI GTAC 3 cut(s) 707, 788, 849
RsaNI GTAC 3 cut(s) 706, 787, 848
RseI CAYNNNNRTG 1 cut(s) 192
SaqAI TTAA 2 cut(s) 137, 780
SatI GCNGC 1 cut(s) 128
Sau3AI GATC 6 cut(s) 183, 360, 591, 619, 733, 799
ScrFI CCNGG 2 cut(s) 75, 265
SduI GDGCHC 1 cut(s) 81
SmiMI CAYNNNNRTG 1 cut(s) 192
SpeI ACTAGT 2 cut(s) 119, 886
Sse9I AATT 2 cut(s) 407, 615
SsiI CCGC 4 cut(s) 299, 490, 539, 612
SspMI CTAG 4 cut(s) 120, 159, 221, 887
StyD4I CCNGG 2 cut(s) 73, 263
StyI CCWWGG 1 cut(s) 220
TaaI ACNGT 2 cut(s) 14, 454
TaiI ACGT 1 cut(s) 306
TaqI TCGA 1 cut(s) 904
TasI AATT 2 cut(s) 407, 615
TatI WGTACW 1 cut(s) 705
TfiI GAWTC 2 cut(s) 49, 347
Tru1I TTAA 2 cut(s) 137, 780
Tru9I TTAA 2 cut(s) 137, 780
TscAI CASTG 3 cut(s) 459, 576, 811
TseFI GTSAC 3 cut(s) 115, 600, 889
TseI GCWGC 1 cut(s) 127
Tsp45I GTSAC 3 cut(s) 115, 600, 889
TspDTI ATGAA 3 cut(s) 81, 420, 509
TspGWI ACGGA 2 cut(s) 392, 529
TspRI CASTG 3 cut(s) 459, 576, 811
XapI RAATTY 1 cut(s) 407
XceI RCATGY 1 cut(s) 31
XcmI CCANNNNNNNNNTGG 1 cut(s) 639
XmaJI CCTAGG 1 cut(s) 220
XspI CTAG 4 cut(s) 120, 159, 221, 887
Zsp2I ATGCAT 1 cut(s) 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.