MD12G1014400.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
1483767 .. 1486584
2818 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1014400.v1.1.491

Sequence Viewer

Length: 582 bp
ATGTGGCCTTTTGTTTATATTAAGACATTTGGTTATGCCTTTAAAAATGAGAGAGTTGGGAACGGCAGATTTGAGAGAAGAAAGAGAAGGGTTGCTGTTATCTATCCTTCCCATTTGTTTGAATTTGGTATATGTTTCCATCTTCTCCATTTGTTCTTTGTGAGAGTGAGAGCTATTGGGTGTATGTGGGATTTGGGTTTGAGAGTTAAAACTCTATTTGTAATCTCCATTTTGATATTAGTGGAATTTCCTCGCCGTCTCAGAACTGGACGTAGGCTTATGCCGAACCAGTATAAATCCTTGCTTGCTCTTCATCGGTGTTTTTATTGTTTTGGATATTGGTGGAGTTCGTTGTGTGTCCAACTTTGGTATGGTGTGCTTGATCTTTTGTTGGCGATATTGAAGAATTTCAGTTCTTCGTTTGAATCACCTTTTGTTTTGATCAAGGCACTTATGGTTTGCAAATTTGGAGAAGACGGTAAAGAAATGGTCTACTTTTGTTGGCTTTGGTACAATTTGAGTCGAGGTGGAAATTGTTATGAGCACTGTGGAATTTCCTCGCCGTCCCGGAACTGGACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

22.99

Weight (kDa)

9.71

Isoelectric Point (pI)

45.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 492
AcsI RAATTY 5 cut(s) 122, 245, 406, 464, 552
AfaI GTAC 1 cut(s) 512
AfiI CCNNNNNNNGG 1 cut(s) 573
AgsI TTSAA 3 cut(s) 122, 403, 425
AluBI AGCT 1 cut(s) 173
AluI AGCT 1 cut(s) 173
Alw21I GWGCWC 1 cut(s) 546
Alw26I GTCTC 1 cut(s) 263
AoxI GGCC 1 cut(s) 5
ApoI RAATTY 5 cut(s) 122, 245, 406, 464, 552
Asp700I GAANNNNTTC 1 cut(s) 407
AsuC2I CCSGG 1 cut(s) 568
AsuHPI GGTGA 1 cut(s) 420
BbsI GAAGAC 1 cut(s) 480
Bbv12I GWGCWC 1 cut(s) 546
BccI CCATC 1 cut(s) 147
BceAI ACGGC 3 cut(s) 79, 240, 547
BclI TGATCA 1 cut(s) 441
BcnI CCSGG 1 cut(s) 568
BcoDI GTCTC 1 cut(s) 263
Bme1390I CCNGG 1 cut(s) 568
BmrFI CCNGG 1 cut(s) 568
BpiI GAAGAC 1 cut(s) 480
BpuMI CCSGG 1 cut(s) 568
Bsc4I CCNNNNNNNGG 1 cut(s) 573
Bse1I ACTGG 3 cut(s) 271, 289, 578
BseLI CCNNNNNNNGG 1 cut(s) 573
BseMII CTCAG 1 cut(s) 274
BseNI ACTGG 3 cut(s) 271, 289, 578
BshFI GGCC 1 cut(s) 7
BsiHKAI GWGCWC 1 cut(s) 546
BsiSI CCGG 1 cut(s) 568
BslFI GGGAC 1 cut(s) 550
BslI CCNNNNNNNGG 1 cut(s) 573
BsmAI GTCTC 1 cut(s) 263
BsmBI CGTCTC 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 550
BsnI GGCC 1 cut(s) 7
Bsp1286I GDGCHC 1 cut(s) 546
Bsp143I GATC 2 cut(s) 382, 441
BspANI GGCC 1 cut(s) 7
BspCNI CTCAG 1 cut(s) 273
BspQI GCTCTTC 1 cut(s) 315
BsrI ACTGG 3 cut(s) 271, 289, 578
BssMI GATC 2 cut(s) 382, 441
Bst4CI ACNGT 2 cut(s) 479, 548
Bst6I CTCTTC 1 cut(s) 315
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 1 cut(s) 260
BstKTI GATC 2 cut(s) 385, 444
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 2 cut(s) 382, 441
BstSCI CCNGG 1 cut(s) 566
BstV2I GAAGAC 1 cut(s) 480
BsuRI GGCC 1 cut(s) 7
BtsIMutI CAGTG 1 cut(s) 544
Cac8I GCNNGC 1 cut(s) 306
Csp6I GTAC 1 cut(s) 511
CviJI RGCY 4 cut(s) 7, 173, 277, 505
CviKI_1 RGCY 4 cut(s) 7, 173, 277, 505
CviQI GTAC 1 cut(s) 511
DdeI CTNAG 1 cut(s) 260
DpnI GATC 2 cut(s) 384, 443
DpnII GATC 2 cut(s) 382, 441
DraI TTTAAA 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 315
Esp3I CGTCTC 1 cut(s) 263
FaqI GGGAC 1 cut(s) 550
FbaI TGATCA 1 cut(s) 441
FblI GTMKAC 1 cut(s) 492
HaeIII GGCC 1 cut(s) 7
HapII CCGG 1 cut(s) 568
HinfI GANTC 2 cut(s) 425, 520
HpaII CCGG 1 cut(s) 568
HphI GGTGA 1 cut(s) 420
Hpy166II GTNNAC 1 cut(s) 493
Hpy188I TCNGA 1 cut(s) 263
Hpy8I GTNNAC 1 cut(s) 493
HpyAV CCTTC 2 cut(s) 81, 117
HpyCH4III ACNGT 2 cut(s) 479, 548
HpyCH4IV ACGT 2 cut(s) 271, 578
HpyCH4V TGCA 1 cut(s) 462
HpyF3I CTNAG 1 cut(s) 260
HpySE526I ACGT 2 cut(s) 271, 578
Ksp22I TGATCA 1 cut(s) 441
Kzo9I GATC 2 cut(s) 382, 441
LguI GCTCTTC 1 cut(s) 315
LpnPI CCDG 3 cut(s) 252, 302, 559
MaeII ACGT 2 cut(s) 271, 578
MalI GATC 2 cut(s) 384, 443
MboI GATC 2 cut(s) 382, 441
MboII GAAGA 6 cut(s) 90, 134, 302, 408, 415, 485
MhlI GDGCHC 1 cut(s) 546
MluCI AATT 7 cut(s) 122, 245, 406, 464, 514, 532, 552
MlyI GAGTC 1 cut(s) 529
MmeI TCCRAC 1 cut(s) 385
MnlI CCTC 3 cut(s) 261, 518, 568
MroXI GAANNNNTTC 1 cut(s) 407
MseI TTAA 3 cut(s) 21, 42, 207
MspI CCGG 1 cut(s) 568
MspR9I CCNGG 1 cut(s) 568
NciI CCSGG 1 cut(s) 568
NdeII GATC 2 cut(s) 382, 441
PciSI GCTCTTC 1 cut(s) 315
PdmI GAANNNNTTC 1 cut(s) 407
PfeI GAWTC 1 cut(s) 425
PfoI TCCNGGA 1 cut(s) 566
PleI GAGTC 1 cut(s) 528
PpsI GAGTC 1 cut(s) 528
RsaI GTAC 1 cut(s) 512
RsaNI GTAC 1 cut(s) 511
SapI GCTCTTC 1 cut(s) 315
SaqAI TTAA 3 cut(s) 21, 42, 207
Sau3AI GATC 2 cut(s) 382, 441
SchI GAGTC 1 cut(s) 529
ScrFI CCNGG 1 cut(s) 568
SduI GDGCHC 1 cut(s) 546
SetI ASST 5 cut(s) 175, 274, 433, 529, 581
SgeI CNNG 9 cut(s) 264, 279, 301, 313, 317, 392, 457, 536, 571
Sse9I AATT 7 cut(s) 122, 245, 406, 464, 514, 532, 552
StyD4I CCNGG 1 cut(s) 566
TaaI ACNGT 2 cut(s) 479, 548
TaiI ACGT 2 cut(s) 274, 581
TaqI TCGA 1 cut(s) 523
TasI AATT 7 cut(s) 122, 245, 406, 464, 514, 532, 552
TfiI GAWTC 1 cut(s) 425
Tru1I TTAA 3 cut(s) 21, 42, 207
Tru9I TTAA 3 cut(s) 21, 42, 207
TscAI CASTG 1 cut(s) 551
TspDTI ATGAA 1 cut(s) 302
TspRI CASTG 1 cut(s) 551
XapI RAATTY 5 cut(s) 122, 245, 406, 464, 552
XcmI CCANNNNNNNNNTGG 1 cut(s) 368
XmiI GTMKAC 1 cut(s) 492
XmnI GAANNNNTTC 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.