Prupe.1G188900_v2.0.a1

4-coumarate--CoA ligase-like 9

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
17399961 .. 17400621
661 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G188900.1

Sequence Viewer

Length: 570 bp
ATGAGTATTCCCTCACAATTCAAGGTGGAACAATTTGATGGAAATATGAGCTTTACTATTTGGCAAAGAATAGTGAAGGGTAAGGATGCAAAGCAAGAGAGGATGGTGGTTATAAGAGAGAAGACTTGGAGTCGAGATGAAGATTCTGCCCGAACATTGTGGGAGAAGTTGGAGAGGCTTTATCTCAATAAGAGCTTAAACACGAAGTTGAATCTAAAGCAGGATTTGTACAAGCTAAAGATGAATGAGGGGTTGTTGAATCAACTGGCAAGGGTTGATGTCAAGATTAAGGAAGAAAATAAAACCTTTTTACTTCTTACCTCACTTCCCAATTTGTATGACCGCGTTTTAACTACGATGTTTTATGATAAGTATACATTAAAGATGGAGGATGTGGAGGCAACTCTCTTGTCTAATGAGAAGAGGAAGATAGTTGAGGATAGCCATAGTCAAAATCAAAAGGGAAGACAAACTGTTAGGGGATCGAGCAGTCACAACAAGTCAAAATCTAGGGATAGTGGAAAGGGCGTTCAATGCTACAAGTGCAAGGAGTTGGGGCATTTAAAGTGA

Protein Analysis

190

Amino Acids

22.2

Weight (kDa)

9.63

Isoelectric Point (pI)

38.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 113
AccI GTMKAC 1 cut(s) 374
AccII CGCG 1 cut(s) 345
AciI CCGC 1 cut(s) 343
AclWI GGATC 1 cut(s) 490
AfaI GTAC 1 cut(s) 230
AgsI TTSAA 4 cut(s) 22, 211, 259, 533
AhdI GACNNNNNGTC 1 cut(s) 129
AloI GAACNNNNNNTCC 2 cut(s) 513, 545
AluBI AGCT 3 cut(s) 51, 195, 235
AluI AGCT 3 cut(s) 51, 195, 235
AlwI GGATC 1 cut(s) 490
BbsI GAAGAC 2 cut(s) 128, 472
BccI CCATC 3 cut(s) 32, 97, 379
BfaI CTAG 1 cut(s) 510
BmeRI GACNNNNNGTC 1 cut(s) 129
BmsI GCATC 1 cut(s) 76
BpiI GAAGAC 2 cut(s) 128, 472
Bse1I ACTGG 1 cut(s) 270
BseGI GGATG 3 cut(s) 91, 108, 397
BseNI ACTGG 1 cut(s) 270
Bsh1236I CGCG 1 cut(s) 345
Bsp1407I TGTACA 1 cut(s) 228
Bsp143I GATC 1 cut(s) 482
BspACI CCGC 1 cut(s) 343
BspFNI CGCG 1 cut(s) 345
BspPI GGATC 1 cut(s) 490
BsrGI TGTACA 1 cut(s) 228
BsrI ACTGG 1 cut(s) 270
BssMI GATC 1 cut(s) 482
BssNAI GTATAC 1 cut(s) 375
Bst1107I GTATAC 1 cut(s) 375
Bst4CI ACNGT 1 cut(s) 475
Bst6I CTCTTC 1 cut(s) 416
BstAUI TGTACA 1 cut(s) 228
BstF5I GGATG 3 cut(s) 91, 108, 397
BstFNI CGCG 1 cut(s) 345
BstKTI GATC 1 cut(s) 485
BstMBI GATC 1 cut(s) 482
BstMWI GCNNNNNNNGC 2 cut(s) 534, 543
BstUI CGCG 1 cut(s) 345
BstV2I GAAGAC 2 cut(s) 128, 472
BstZ17I GTATAC 1 cut(s) 375
BtsCI GGATG 3 cut(s) 91, 108, 397
Csp6I GTAC 1 cut(s) 229
CviJI RGCY 5 cut(s) 51, 178, 195, 235, 444
CviKI_1 RGCY 5 cut(s) 51, 178, 195, 235, 444
CviQI GTAC 1 cut(s) 229
DpnI GATC 1 cut(s) 484
DpnII GATC 1 cut(s) 482
DraI TTTAAA 1 cut(s) 564
DriI GACNNNNNGTC 1 cut(s) 129
Eam1104I CTCTTC 1 cut(s) 416
Eam1105I GACNNNNNGTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 416
FaiI YATR 6 cut(s) 47, 113, 339, 366, 375, 447
FblI GTMKAC 1 cut(s) 374
FokI GGATG 3 cut(s) 98, 115, 404
FspBI CTAG 1 cut(s) 510
HinfI GANTC 4 cut(s) 130, 143, 211, 259
Hpy166II GTNNAC 1 cut(s) 375
Hpy188III TCNNGA 2 cut(s) 134, 283
Hpy8I GTNNAC 1 cut(s) 375
HpyAV CCTTC 1 cut(s) 70
HpyCH4III ACNGT 1 cut(s) 475
HpyCH4V TGCA 2 cut(s) 89, 546
HpyF10VI GCNNNNNNNGC 2 cut(s) 534, 543
Kzo9I GATC 1 cut(s) 482
LpnPI CCDG 2 cut(s) 206, 251
LweI GCATC 1 cut(s) 76
MaeI CTAG 1 cut(s) 510
MaeIII GTNAC 1 cut(s) 491
MalI GATC 1 cut(s) 484
MboI GATC 1 cut(s) 482
MboII GAAGA 6 cut(s) 133, 152, 305, 433, 439, 477
MluCI AATT 3 cut(s) 17, 32, 331
MlyI GAGTC 1 cut(s) 139
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 9 cut(s) 22, 93, 168, 241, 331, 382, 391, 417, 430
MseI TTAA 5 cut(s) 197, 288, 350, 380, 563
MvnI CGCG 1 cut(s) 345
MwoI GCNNNNNNNGC 2 cut(s) 534, 543
NdeII GATC 1 cut(s) 482
NmuCI GTSAC 1 cut(s) 491
PfeI GAWTC 3 cut(s) 143, 211, 259
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
PsiI TTATAA 1 cut(s) 113
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
SaqAI TTAA 5 cut(s) 197, 288, 350, 380, 563
Sau3AI GATC 1 cut(s) 482
SchI GAGTC 1 cut(s) 139
SetI ASST 6 cut(s) 27, 53, 197, 237, 308, 323
SfaNI GCATC 1 cut(s) 76
Sse9I AATT 3 cut(s) 17, 32, 331
SsiI CCGC 1 cut(s) 343
SspMI CTAG 1 cut(s) 510
TaaI ACNGT 1 cut(s) 475
TaqI TCGA 2 cut(s) 133, 485
TasI AATT 3 cut(s) 17, 32, 331
TatI WGTACW 1 cut(s) 228
TfiI GAWTC 3 cut(s) 143, 211, 259
Tru1I TTAA 5 cut(s) 197, 288, 350, 380, 563
Tru9I TTAA 5 cut(s) 197, 288, 350, 380, 563
TseFI GTSAC 1 cut(s) 491
Tsp45I GTSAC 1 cut(s) 491
TspDTI ATGAA 2 cut(s) 153, 257
XmiI GTMKAC 1 cut(s) 374
XspI CTAG 1 cut(s) 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.