gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 42 - 99 | 3.2e-09 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 89, 232 |
| AatII | GACGTC | 1 cut(s) | 236 |
| AciI | CCGC | 1 cut(s) | 237 |
| AclWI | GGATC | 1 cut(s) | 300 |
| AcsI | RAATTY | 1 cut(s) | 35 |
| AcyI | GRCGYC | 1 cut(s) | 233 |
| AfaI | GTAC | 1 cut(s) | 178 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 94, 186, 243 |
| AgsI | TTSAA | 1 cut(s) | 263 |
| AluBI | AGCT | 4 cut(s) | 113, 159, 173, 259 |
| AluI | AGCT | 4 cut(s) | 113, 159, 173, 259 |
| Alw26I | GTCTC | 1 cut(s) | 224 |
| AlwI | GGATC | 1 cut(s) | 300 |
| ApoI | RAATTY | 1 cut(s) | 35 |
| AsuHPI | GGTGA | 1 cut(s) | 88 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 297, 329 |
| BccI | CCATC | 3 cut(s) | 35, 92, 113 |
| BclI | TGATCA | 1 cut(s) | 163 |
| BcoDI | GTCTC | 1 cut(s) | 224 |
| BfaI | CTAG | 2 cut(s) | 89, 275 |
| BfmI | CTRYAG | 1 cut(s) | 314 |
| BpuEI | CTTGAG | 1 cut(s) | 285 |
| BsaHI | GRCGYC | 1 cut(s) | 233 |
| BsaWI | WCCGGW | 1 cut(s) | 186 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 94, 186, 243 |
| BseGI | GGATG | 3 cut(s) | 84, 103, 124 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 94, 186, 243 |
| BsiSI | CCGG | 1 cut(s) | 187 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 94, 186, 243 |
| BsmAI | GTCTC | 1 cut(s) | 224 |
| BsmBI | CGTCTC | 1 cut(s) | 224 |
| Bsp143I | GATC | 2 cut(s) | 163, 292 |
| BspACI | CCGC | 1 cut(s) | 237 |
| BspHI | TCATGA | 1 cut(s) | 222 |
| BspPI | GGATC | 1 cut(s) | 300 |
| BssMI | GATC | 2 cut(s) | 163, 292 |
| BssNI | GRCGYC | 1 cut(s) | 233 |
| BstACI | GRCGYC | 1 cut(s) | 233 |
| BstC8I | GCNNGC | 1 cut(s) | 171 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 92 |
| BstF5I | GGATG | 3 cut(s) | 84, 103, 124 |
| BstKTI | GATC | 2 cut(s) | 166, 295 |
| BstMAI | GTCTC | 1 cut(s) | 224 |
| BstMBI | GATC | 2 cut(s) | 163, 292 |
| BstNSI | RCATGY | 1 cut(s) | 64 |
| BstSFI | CTRYAG | 1 cut(s) | 314 |
| BtsCI | GGATG | 3 cut(s) | 84, 103, 124 |
| Cac8I | GCNNGC | 1 cut(s) | 171 |
| CciI | TCATGA | 1 cut(s) | 222 |
| Csp6I | GTAC | 1 cut(s) | 177 |
| CviAII | CATG | 2 cut(s) | 61, 223 |
| CviJI | RGCY | 5 cut(s) | 5, 113, 159, 173, 259 |
| CviKI_1 | RGCY | 5 cut(s) | 5, 113, 159, 173, 259 |
| CviQI | GTAC | 1 cut(s) | 177 |
| DpnI | GATC | 2 cut(s) | 165, 294 |
| DpnII | GATC | 2 cut(s) | 163, 292 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 89, 232 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 89, 232 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 92 |
| Esp3I | CGTCTC | 1 cut(s) | 224 |
| FaeI | CATG | 2 cut(s) | 64, 226 |
| FaiI | YATR | 5 cut(s) | 24, 62, 216, 224, 327 |
| FatI | CATG | 2 cut(s) | 60, 222 |
| FbaI | TGATCA | 1 cut(s) | 163 |
| FokI | GGATG | 3 cut(s) | 71, 110, 131 |
| FspBI | CTAG | 2 cut(s) | 89, 275 |
| HapII | CCGG | 1 cut(s) | 187 |
| Hin1I | GRCGYC | 1 cut(s) | 233 |
| Hin1II | CATG | 2 cut(s) | 64, 226 |
| HindIII | AAGCTT | 4 cut(s) | 111, 157, 171, 257 |
| HpaII | CCGG | 1 cut(s) | 187 |
| HphI | GGTGA | 1 cut(s) | 88 |
| Hpy166II | GTNNAC | 1 cut(s) | 322 |
| Hpy188I | TCNGA | 1 cut(s) | 292 |
| Hpy188III | TCNNGA | 3 cut(s) | 31, 223, 302 |
| Hpy8I | GTNNAC | 1 cut(s) | 322 |
| HpyCH4IV | ACGT | 1 cut(s) | 233 |
| HpySE526I | ACGT | 1 cut(s) | 233 |
| Hsp92I | GRCGYC | 1 cut(s) | 233 |
| Hsp92II | CATG | 2 cut(s) | 64, 226 |
| Ksp22I | TGATCA | 1 cut(s) | 163 |
| Kzo9I | GATC | 2 cut(s) | 163, 292 |
| LpnPI | CCDG | 3 cut(s) | 143, 200, 302 |
| MaeI | CTAG | 2 cut(s) | 89, 275 |
| MaeII | ACGT | 1 cut(s) | 233 |
| MalI | GATC | 2 cut(s) | 165, 294 |
| MboI | GATC | 2 cut(s) | 163, 292 |
| MluCI | AATT | 2 cut(s) | 35, 52 |
| MnlI | CCTC | 2 cut(s) | 3, 67 |
| MspI | CCGG | 1 cut(s) | 187 |
| NdeII | GATC | 2 cut(s) | 163, 292 |
| NlaIII | CATG | 2 cut(s) | 64, 226 |
| NspI | RCATGY | 1 cut(s) | 64 |
| PagI | TCATGA | 1 cut(s) | 222 |
| RsaI | GTAC | 1 cut(s) | 178 |
| RsaNI | GTAC | 1 cut(s) | 177 |
| Sau3AI | GATC | 2 cut(s) | 163, 292 |
| SetI | ASST | 9 cut(s) | 23, 78, 115, 161, 175, 236, 261, 276, 321 |
| SfcI | CTRYAG | 1 cut(s) | 314 |
| SmlI | CTYRAG | 1 cut(s) | 300 |
| SmoI | CTYRAG | 1 cut(s) | 300 |
| Sse9I | AATT | 2 cut(s) | 35, 52 |
| SsiI | CCGC | 1 cut(s) | 237 |
| SspMI | CTAG | 2 cut(s) | 89, 275 |
| TaiI | ACGT | 1 cut(s) | 236 |
| TaqI | TCGA | 3 cut(s) | 8, 30, 200 |
| TasI | AATT | 2 cut(s) | 35, 52 |
| TspDTI | ATGAA | 1 cut(s) | 152 |
| TspGWI | ACGGA | 1 cut(s) | 242 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 92 |
| XapI | RAATTY | 1 cut(s) | 35 |
| XceI | RCATGY | 1 cut(s) | 64 |
| XspI | CTAG | 2 cut(s) | 89, 275 |
| ZraI | GACGTC | 1 cut(s) | 234 |