Mitochondrial protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 365 |
| AciI | CCGC | 2 cut(s) | 381, 862 |
| AcsI | RAATTY | 2 cut(s) | 532, 750 |
| AfaI | GTAC | 5 cut(s) | 329, 915, 958, 1041, 1075 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 256, 501, 1242 |
| AflIII | ACRYGT | 3 cut(s) | 63, 455, 643 |
| AgeI | ACCGGT | 1 cut(s) | 249 |
| AgsI | TTSAA | 4 cut(s) | 139, 602, 1177, 1199 |
| AjnI | CCWGG | 1 cut(s) | 1121 |
| AleI | CACNNNNGTG | 2 cut(s) | 68, 1083 |
| AluBI | AGCT | 7 cut(s) | 42, 57, 92, 733, 758, 850, 989 |
| AluI | AGCT | 7 cut(s) | 42, 57, 92, 733, 758, 850, 989 |
| Alw26I | GTCTC | 4 cut(s) | 393, 634, 880, 1199 |
| Ama87I | CYCGRG | 1 cut(s) | 759 |
| ApeKI | GCWGC | 1 cut(s) | 618 |
| ApoI | RAATTY | 2 cut(s) | 532, 750 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 236, 268 |
| AsiGI | ACCGGT | 1 cut(s) | 249 |
| AspS9I | GGNCC | 4 cut(s) | 247, 428, 743, 1058 |
| AsuHPI | GGTGA | 2 cut(s) | 187, 728 |
| AvaI | CYCGRG | 1 cut(s) | 759 |
| AvaII | GGWCC | 4 cut(s) | 247, 428, 743, 1058 |
| BanI | GGYRCC | 1 cut(s) | 365 |
| BauI | CACGAG | 1 cut(s) | 1069 |
| BbvI | GCAGC | 1 cut(s) | 605 |
| BccI | CCATC | 3 cut(s) | 419, 713, 1005 |
| BciT130I | CCWGG | 1 cut(s) | 1123 |
| BclI | TGATCA | 1 cut(s) | 1114 |
| BcoDI | GTCTC | 4 cut(s) | 393, 634, 880, 1199 |
| BfaI | CTAG | 2 cut(s) | 755, 899 |
| BfmI | CTRYAG | 1 cut(s) | 805 |
| BisI | GCNGC | 3 cut(s) | 381, 619, 863 |
| BlsI | GCNGC | 3 cut(s) | 382, 620, 864 |
| BmcAI | AGTACT | 1 cut(s) | 1075 |
| Bme1390I | CCNGG | 1 cut(s) | 1123 |
| Bme18I | GGWCC | 4 cut(s) | 247, 428, 743, 1058 |
| BmeT110I | CYCGRG | 1 cut(s) | 759 |
| BmgT120I | GGNCC | 4 cut(s) | 247, 428, 743, 1058 |
| BmiI | GGNNCC | 2 cut(s) | 367, 1060 |
| BmrFI | CCNGG | 1 cut(s) | 1123 |
| BmrI | ACTGGG | 1 cut(s) | 687 |
| BmsI | GCATC | 1 cut(s) | 488 |
| BmuI | ACTGGG | 1 cut(s) | 687 |
| BoxI | GACNNNNGTC | 1 cut(s) | 657 |
| BpuEI | CTTGAG | 3 cut(s) | 81, 323, 432 |
| BsaI | GGTCTC | 1 cut(s) | 1199 |
| BsaJI | CCNNGG | 2 cut(s) | 205, 232 |
| BsaWI | WCCGGW | 1 cut(s) | 249 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 390, 420 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 256, 501, 1242 |
| Bse118I | RCCGGY | 3 cut(s) | 249, 841, 1208 |
| Bse1I | ACTGG | 2 cut(s) | 532, 682 |
| Bse3DI | GCAATG | 1 cut(s) | 961 |
| BseBI | CCWGG | 1 cut(s) | 1123 |
| BseDI | CCNNGG | 2 cut(s) | 205, 232 |
| BseGI | GGATG | 1 cut(s) | 1039 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 256, 501, 1242 |
| BseMI | GCAATG | 1 cut(s) | 961 |
| BseMII | CTCAG | 4 cut(s) | 102, 168, 748, 1136 |
| BseNI | ACTGG | 2 cut(s) | 532, 682 |
| BseRI | GAGGAG | 2 cut(s) | 84, 600 |
| BseXI | GCAGC | 1 cut(s) | 605 |
| BseYI | CCCAGC | 1 cut(s) | 57 |
| BshNI | GGYRCC | 1 cut(s) | 365 |
| BshTI | ACCGGT | 1 cut(s) | 249 |
| BsiHKCI | CYCGRG | 1 cut(s) | 759 |
| BsiSI | CCGG | 4 cut(s) | 250, 842, 1191, 1209 |
| BslFI | GGGAC | 2 cut(s) | 74, 1044 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 256, 501, 1242 |
| BsmAI | GTCTC | 4 cut(s) | 393, 634, 880, 1199 |
| BsmBI | CGTCTC | 1 cut(s) | 393 |
| BsmFI | GGGAC | 2 cut(s) | 74, 1044 |
| BsmI | GAATGC | 1 cut(s) | 1227 |
| Bso31I | GGTCTC | 1 cut(s) | 1199 |
| BsoBI | CYCGRG | 1 cut(s) | 759 |
| Bsp1407I | TGTACA | 1 cut(s) | 1039 |
| Bsp143I | GATC | 4 cut(s) | 573, 669, 1114, 1156 |
| BspACI | CCGC | 2 cut(s) | 381, 862 |
| BspCNI | CTCAG | 4 cut(s) | 101, 169, 747, 1137 |
| BspLI | GGNNCC | 2 cut(s) | 367, 1060 |
| BspQI | GCTCTTC | 1 cut(s) | 339 |
| BspT107I | GGYRCC | 1 cut(s) | 365 |
| BspTNI | GGTCTC | 1 cut(s) | 1199 |
| BsrDI | GCAATG | 1 cut(s) | 961 |
| BsrFI | RCCGGY | 3 cut(s) | 249, 841, 1208 |
| BsrGI | TGTACA | 1 cut(s) | 1039 |
| BsrI | ACTGG | 2 cut(s) | 532, 682 |
| BssAI | RCCGGY | 3 cut(s) | 249, 841, 1208 |
| BssECI | CCNNGG | 2 cut(s) | 205, 232 |
| BssMI | GATC | 4 cut(s) | 573, 669, 1114, 1156 |
| BssSI | CACGAG | 1 cut(s) | 1069 |
| Bst2BI | CACGAG | 1 cut(s) | 1069 |
| Bst2UI | CCWGG | 1 cut(s) | 1123 |
| Bst4CI | ACNGT | 4 cut(s) | 30, 121, 206, 918 |
| Bst6I | CTCTTC | 3 cut(s) | 339, 577, 878 |
| BstAUI | TGTACA | 1 cut(s) | 1039 |
| BstC8I | GCNNGC | 2 cut(s) | 24, 351 |
| BstDEI | CTNAG | 6 cut(s) | 38, 88, 177, 622, 734, 1145 |
| BstDSI | CCRYGG | 1 cut(s) | 205 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 499 |
| BstF5I | GGATG | 1 cut(s) | 1039 |
| BstKTI | GATC | 4 cut(s) | 576, 672, 1117, 1159 |
| BstMAI | GTCTC | 4 cut(s) | 393, 634, 880, 1199 |
| BstMBI | GATC | 4 cut(s) | 573, 669, 1114, 1156 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 267, 847, 862 |
| BstNI | CCWGG | 1 cut(s) | 1123 |
| BstNSI | RCATGY | 5 cut(s) | 136, 459, 491, 647, 658 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 657 |
| BstSCI | CCNGG | 1 cut(s) | 1121 |
| BstSFI | CTRYAG | 1 cut(s) | 805 |
| BstV1I | GCAGC | 1 cut(s) | 605 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 57, 577 |
| BtgI | CCRYGG | 1 cut(s) | 205 |
| BtsCI | GGATG | 1 cut(s) | 1039 |
| BtsIMutI | CAGTG | 5 cut(s) | 26, 110, 117, 675, 1142 |
| Cac8I | GCNNGC | 2 cut(s) | 24, 351 |
| Cfr10I | RCCGGY | 3 cut(s) | 249, 841, 1208 |
| Cfr13I | GGNCC | 4 cut(s) | 247, 428, 743, 1058 |
| CseI | GACGC | 2 cut(s) | 485, 647 |
| Csp6I | GTAC | 5 cut(s) | 328, 914, 957, 1040, 1074 |
| CspAI | ACCGGT | 1 cut(s) | 249 |
| CviQI | GTAC | 5 cut(s) | 328, 914, 957, 1040, 1074 |
| DdeI | CTNAG | 6 cut(s) | 38, 88, 177, 622, 734, 1145 |
| DpnI | GATC | 4 cut(s) | 575, 671, 1116, 1158 |
| DpnII | GATC | 4 cut(s) | 573, 669, 1114, 1156 |
| Eam1104I | CTCTTC | 3 cut(s) | 339, 577, 878 |
| EarI | CTCTTC | 3 cut(s) | 339, 577, 878 |
| Eco31I | GGTCTC | 1 cut(s) | 1199 |
| Eco47I | GGWCC | 4 cut(s) | 247, 428, 743, 1058 |
| Eco88I | CYCGRG | 1 cut(s) | 759 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 499 |
| EcoRII | CCWGG | 1 cut(s) | 1121 |
| EcoT22I | ATGCAT | 1 cut(s) | 1229 |
| Esp3I | CGTCTC | 1 cut(s) | 393 |
| FaqI | GGGAC | 2 cut(s) | 74, 1044 |
| FauNDI | CATATG | 2 cut(s) | 394, 793 |
| FbaI | TGATCA | 1 cut(s) | 1114 |
| Fnu4HI | GCNGC | 3 cut(s) | 381, 619, 863 |
| FokI | GGATG | 1 cut(s) | 1046 |
| Fsp4HI | GCNGC | 3 cut(s) | 381, 619, 863 |
| FspBI | CTAG | 2 cut(s) | 755, 899 |
| GluI | GCNGC | 3 cut(s) | 381, 619, 863 |
| GsaI | CCCAGC | 1 cut(s) | 61 |
| HapII | CCGG | 4 cut(s) | 250, 842, 1191, 1209 |
| HgaI | GACGC | 2 cut(s) | 485, 647 |
| HinfI | GANTC | 3 cut(s) | 179, 470, 836 |
| HpaII | CCGG | 4 cut(s) | 250, 842, 1191, 1209 |
| HphI | GGTGA | 2 cut(s) | 187, 728 |
| Hpy188I | TCNGA | 3 cut(s) | 184, 287, 475 |
| Hpy188III | TCNNGA | 4 cut(s) | 449, 498, 650, 746 |
| Hpy99I | CGWCG | 2 cut(s) | 470, 479 |
| HpyAV | CCTTC | 5 cut(s) | 495, 689, 763, 1114, 1120 |
| HpyCH4III | ACNGT | 4 cut(s) | 30, 121, 206, 918 |
| HpyCH4IV | ACGT | 2 cut(s) | 65, 1010 |
| HpyCH4V | TGCA | 7 cut(s) | 22, 487, 797, 818, 1088, 1142, 1227 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 267, 847, 862 |
| HpyF3I | CTNAG | 6 cut(s) | 38, 88, 177, 622, 734, 1145 |
| HpySE526I | ACGT | 2 cut(s) | 65, 1010 |
| Ksp22I | TGATCA | 1 cut(s) | 1114 |
| Kzo9I | GATC | 4 cut(s) | 573, 669, 1114, 1156 |
| LguI | GCTCTTC | 1 cut(s) | 339 |
| LmnI | GCTCC | 3 cut(s) | 97, 830, 847 |
| Lsp1109I | GCAGC | 1 cut(s) | 605 |
| LweI | GCATC | 1 cut(s) | 488 |
| MaeI | CTAG | 2 cut(s) | 755, 899 |
| MaeII | ACGT | 2 cut(s) | 65, 1010 |
| MaeIII | GTNAC | 5 cut(s) | 33, 193, 311, 490, 1099 |
| MalI | GATC | 4 cut(s) | 575, 671, 1116, 1158 |
| MboI | GATC | 4 cut(s) | 573, 669, 1114, 1156 |
| MboII | GAAGA | 6 cut(s) | 155, 289, 356, 502, 594, 895 |
| MluCI | AATT | 6 cut(s) | 436, 532, 664, 750, 819, 1181 |
| MlyI | GAGTC | 2 cut(s) | 188, 830 |
| MmeI | TCCRAC | 3 cut(s) | 162, 498, 1146 |
| Mph1103I | ATGCAT | 1 cut(s) | 1229 |
| MseI | TTAA | 4 cut(s) | 80, 435, 663, 933 |
| MslI | CAYNNNNRTG | 3 cut(s) | 68, 1047, 1083 |
| MspA1I | CMGCKG | 1 cut(s) | 57 |
| MspI | CCGG | 4 cut(s) | 250, 842, 1191, 1209 |
| MspR9I | CCNGG | 1 cut(s) | 1123 |
| Mva1269I | GAATGC | 1 cut(s) | 1227 |
| MvaI | CCWGG | 1 cut(s) | 1123 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 267, 847, 862 |
| NdeI | CATATG | 2 cut(s) | 394, 793 |
| NdeII | GATC | 4 cut(s) | 573, 669, 1114, 1156 |
| NlaIV | GGNNCC | 2 cut(s) | 367, 1060 |
| NmeAIII | GCCGAG | 1 cut(s) | 379 |
| NmuCI | GTSAC | 2 cut(s) | 193, 311 |
| NsiI | ATGCAT | 1 cut(s) | 1229 |
| NspI | RCATGY | 5 cut(s) | 136, 459, 491, 647, 658 |
| OliI | CACNNNNGTG | 2 cut(s) | 68, 1083 |
| PaeR7I | CTCGAG | 1 cut(s) | 759 |
| PciI | ACATGT | 2 cut(s) | 455, 643 |
| PciSI | GCTCTTC | 1 cut(s) | 339 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 471 |
| PctI | GAATGC | 1 cut(s) | 1227 |
| PfeI | GAWTC | 1 cut(s) | 470 |
| PflFI | GACNNNGTC | 1 cut(s) | 178 |
| PfoI | TCCNGGA | 1 cut(s) | 1121 |
| PinAI | ACCGGT | 1 cut(s) | 249 |
| PkrI | GCNGC | 3 cut(s) | 382, 620, 864 |
| PleI | GAGTC | 2 cut(s) | 187, 830 |
| PpsI | GAGTC | 2 cut(s) | 187, 830 |
| PscI | ACATGT | 2 cut(s) | 455, 643 |
| PshAI | GACNNNNGTC | 1 cut(s) | 657 |
| Psp6I | CCWGG | 1 cut(s) | 1121 |
| PspFI | CCCAGC | 1 cut(s) | 57 |
| PspGI | CCWGG | 1 cut(s) | 1121 |
| PspN4I | GGNNCC | 2 cut(s) | 367, 1060 |
| PspPI | GGNCC | 4 cut(s) | 247, 428, 743, 1058 |
| PspXI | VCTCGAGB | 1 cut(s) | 759 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 767, 799 |
| PsyI | GACNNNGTC | 1 cut(s) | 178 |
| PvuII | CAGCTG | 1 cut(s) | 57 |
| RsaI | GTAC | 5 cut(s) | 329, 915, 958, 1041, 1075 |
| RsaNI | GTAC | 5 cut(s) | 328, 914, 957, 1040, 1074 |
| RseI | CAYNNNNRTG | 3 cut(s) | 68, 1047, 1083 |
| SapI | GCTCTTC | 1 cut(s) | 339 |
| SaqAI | TTAA | 4 cut(s) | 80, 435, 663, 933 |
| SatI | GCNGC | 3 cut(s) | 381, 619, 863 |
| Sau3AI | GATC | 4 cut(s) | 573, 669, 1114, 1156 |
| Sau96I | GGNCC | 4 cut(s) | 247, 428, 743, 1058 |
| ScaI | AGTACT | 1 cut(s) | 1075 |
| SchI | GAGTC | 2 cut(s) | 188, 830 |
| ScrFI | CCNGG | 1 cut(s) | 1123 |
| SfaNI | GCATC | 1 cut(s) | 488 |
| SfcI | CTRYAG | 1 cut(s) | 805 |
| Sfr274I | CTCGAG | 1 cut(s) | 759 |
| SgrAI | CRCCGGYG | 1 cut(s) | 841 |
| SinI | GGWCC | 4 cut(s) | 247, 428, 743, 1058 |
| SlaI | CTCGAG | 1 cut(s) | 759 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 68, 1047, 1083 |
| SmlI | CTYRAG | 4 cut(s) | 96, 338, 447, 759 |
| SmoI | CTYRAG | 4 cut(s) | 96, 338, 447, 759 |
| Sse9I | AATT | 6 cut(s) | 436, 532, 664, 750, 819, 1181 |
| SsiI | CCGC | 2 cut(s) | 381, 862 |
| SspMI | CTAG | 2 cut(s) | 755, 899 |
| StyD4I | CCNGG | 1 cut(s) | 1121 |
| TaaI | ACNGT | 4 cut(s) | 30, 121, 206, 918 |
| TaiI | ACGT | 2 cut(s) | 68, 1013 |
| TaqI | TCGA | 6 cut(s) | 173, 217, 468, 687, 760, 985 |
| TasI | AATT | 6 cut(s) | 436, 532, 664, 750, 819, 1181 |
| TatI | WGTACW | 3 cut(s) | 327, 1039, 1073 |
| TauI | GCSGC | 2 cut(s) | 383, 865 |
| TfiI | GAWTC | 1 cut(s) | 470 |
| Tru1I | TTAA | 4 cut(s) | 80, 435, 663, 933 |
| Tru9I | TTAA | 4 cut(s) | 80, 435, 663, 933 |
| TscAI | CASTG | 5 cut(s) | 33, 117, 124, 682, 1149 |
| TseFI | GTSAC | 2 cut(s) | 193, 311 |
| TseI | GCWGC | 1 cut(s) | 618 |
| Tsp45I | GTSAC | 2 cut(s) | 193, 311 |
| TspDTI | ATGAA | 5 cut(s) | 156, 708, 981, 1096, 1175 |
| TspGWI | ACGGA | 1 cut(s) | 1095 |
| TspRI | CASTG | 5 cut(s) | 33, 117, 124, 682, 1149 |
| Tth111I | GACNNNGTC | 1 cut(s) | 178 |
| VpaK11BI | GGWCC | 4 cut(s) | 247, 428, 743, 1058 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 499 |
| XapI | RAATTY | 2 cut(s) | 532, 750 |
| XceI | RCATGY | 5 cut(s) | 136, 459, 491, 647, 658 |
| XhoI | CTCGAG | 1 cut(s) | 759 |
| XspI | CTAG | 2 cut(s) | 755, 899 |
| ZrmI | AGTACT | 1 cut(s) | 1075 |
| Zsp2I | ATGCAT | 1 cut(s) | 1229 |