RchiOBHm_Chr1g0319891

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000278
Physical Location & Seq
Forward (+)
7542378 .. 7543198
821 bp
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UTR
Exon/CDS
Intron
PRQ55009

Sequence Viewer

Length: 177 bp
ATGGCAGATGACAAGGCAGATGCAGGCAGCAATGTGATGCCCATTATATTGAATGGGAATGATAACTTCACATTATGGCAGAGGAAGATGAGAAGTGTCCTGATTCTACAAGGTTTGTATGAGGCTATTCTCGGGATAGAGAATAAGGCAGCTGATATGGCAGACAAGTGCCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2

Protein Analysis

58

Amino Acids

6.44

Weight (kDa)

5.03

Isoelectric Point (pI)

46.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 52
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
Ama87I CYCGRG 1 cut(s) 131
ApeKI GCWGC 2 cut(s) 27, 149
AvaI CYCGRG 1 cut(s) 131
BbvI GCAGC 2 cut(s) 39, 161
BisI GCNGC 2 cut(s) 28, 150
BlsI GCNGC 2 cut(s) 29, 151
BmeT110I CYCGRG 1 cut(s) 131
BmsI GCATC 2 cut(s) 10, 27
Bse118I RCCGGY 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 37
BseMI GCAATG 1 cut(s) 37
BseXI GCAGC 2 cut(s) 39, 161
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 1 cut(s) 172
BsoBI CYCGRG 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 37
BsrFI RCCGGY 1 cut(s) 171
BssAI RCCGGY 1 cut(s) 171
BstC8I GCNNGC 1 cut(s) 25
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstV1I GCAGC 2 cut(s) 39, 161
Cac8I GCNNGC 1 cut(s) 25
Cfr10I RCCGGY 1 cut(s) 171
CviJI RGCY 2 cut(s) 125, 152
CviKI_1 RGCY 2 cut(s) 125, 152
Eco88I CYCGRG 1 cut(s) 131
FaiI YATR 4 cut(s) 47, 76, 120, 158
Fnu4HI GCNGC 2 cut(s) 28, 150
Fsp4HI GCNGC 2 cut(s) 28, 150
GluI GCNGC 2 cut(s) 28, 150
HapII CCGG 1 cut(s) 172
HinfI GANTC 1 cut(s) 103
HpaII CCGG 1 cut(s) 172
Hpy188III TCNNGA 2 cut(s) 100, 133
HpyCH4V TGCA 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
LpnPI CCDG 2 cut(s) 9, 113
Lsp1109I GCAGC 2 cut(s) 39, 161
LweI GCATC 2 cut(s) 10, 27
MboII GAAGA 1 cut(s) 97
MnlI CCTC 2 cut(s) 75, 115
MspA1I CMGCKG 1 cut(s) 152
MspI CCGG 1 cut(s) 172
MwoI GCNNNNNNNGC 1 cut(s) 158
PfeI GAWTC 1 cut(s) 103
PkrI GCNGC 2 cut(s) 29, 151
PvuII CAGCTG 1 cut(s) 152
SatI GCNGC 2 cut(s) 28, 150
SetI ASST 2 cut(s) 115, 154
SfaNI GCATC 2 cut(s) 10, 27
SgeI CNNG 6 cut(s) 25, 36, 112, 122, 143, 145
TfiI GAWTC 1 cut(s) 103
TseI GCWGC 2 cut(s) 27, 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.