FvH4_2g39202

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000278
Physical Location & Seq
Forward (+)
28220724 .. 28223311
2588 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g39202.t2

Sequence Viewer

Length: 921 bp
ATGTCTCAGTGGCACTATTACTACTACCCGGATTACAAGCCAGACATGGACTATTACATCAATGGTCCACCCAGGGAGCCCCAGAAATTCAATGGAAAAGGTGATTTCAGGAGTTGGGAATGTGACGTATGTGATATCCTTGGGTATGAGGACGTTGCTGAAGCTTTGGATGGGAAGCCAGAGTCTATGAAGGAGAAGGATTGGAAGGTGTTCGATGCGAAAGCTTGCTCAATTCTGCGGTTCTACTTGTCCGACGAGGTCAGGAACAAAGTGGTGGCAGAGAAGACGTCTAAAGAGATTTTGGAAAAACTTGAGAGGATTTATTTGAAGAAGGAATCGTTCATCGAGAGGATCAGTCTCAAGATGCAGCTTTACAAGATGAGGATGGATGAGAGCACTACTAGTTTAAGAGACCATCTTGTGGAGTTTGACAGCAGGGTGCATGAGCTTTCGGATTTTGATGTGGAGCTGAGTGAGGATGACAAGGTTTCGATTCTTCTGGCGTCGCTTCCTGAGAAGTATAATGACTTGGTGATGGGAATGCTGTATGCAAAGGACAGTGTGGTATGTGATGAAGTCGAGGAAATGCTCCTCTTCAATGAGAATAGGAATGCACTGGCCAGAAATCAGAATAGAAATGGTGAAGTGAAAACTGGAGTGAACAAAGATCAGGGTTTCTGTGGTGTTGCAGTGAGTTCCTCTGCAGTGAACAAAGATCAGGGTTTTTGTGGTGTTGCAGTGAGTTCCTCTGGAGTGAACAAAGATCAGGGTTTCTGTGGTATTGTTGTGAGTCCCTCTGGATCTTCCAAGTCGACAAAAAATAAAAAAGTAGTAGAGTGTCATTACTGTCACGAAATTGGACATGTTCTGAATCACTGCCCCAAACTGGAGCTGAAGAAAGCGAGGAATATGAATTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve zf-CCHC

Protein Analysis

307

Amino Acids

35.04

Weight (kDa)

5.53

Isoelectric Point (pI)

51.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 52 - 204 2.9e-25 gag-polypeptide of LTR copia-type
Retrotran_gag_2 PF14223 291 - 427 7.8e-23 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 290
AccB7I CCANNNNNTGG 1 cut(s) 421
AccI GTMKAC 1 cut(s) 812
AciI CCGC 1 cut(s) 238
AclWI GGATC 2 cut(s) 359, 808
AcoI YGGCCR 1 cut(s) 618
AcsI RAATTY 2 cut(s) 86, 913
AcuI CTGAAG 2 cut(s) 180, 914
AcyI GRCGYC 2 cut(s) 287, 503
AfiI CCNNNNNNNGG 2 cut(s) 421, 886
AflIII ACRYGT 1 cut(s) 862
AgsI TTSAA 3 cut(s) 91, 328, 598
AhlI ACTAGT 1 cut(s) 401
AjnI CCWGG 1 cut(s) 71
AluBI AGCT 6 cut(s) 164, 224, 370, 448, 469, 892
AluI AGCT 6 cut(s) 164, 224, 370, 448, 469, 892
Alw21I GWGCWC 1 cut(s) 398
Alw26I GTCTC 3 cut(s) 9, 362, 405
AlwI GGATC 2 cut(s) 359, 808
AoxI GGCC 1 cut(s) 618
ApeKI GCWGC 1 cut(s) 367
ApoI RAATTY 2 cut(s) 86, 913
Asp700I GAANNNNTTC 1 cut(s) 209
AspS9I GGNCC 1 cut(s) 65
AsuC2I CCSGG 1 cut(s) 29
AsuHPI GGTGA 3 cut(s) 113, 544, 653
AvaII GGWCC 1 cut(s) 65
BalI TGGCCA 1 cut(s) 620
BanII GRGCYC 1 cut(s) 81
BbsI GAAGAC 1 cut(s) 290
Bbv12I GWGCWC 1 cut(s) 398
BbvI GCAGC 1 cut(s) 379
BccI CCATC 4 cut(s) 164, 379, 423, 529
BciT130I CCWGG 1 cut(s) 73
BcnI CCSGG 1 cut(s) 29
BcoDI GTCTC 3 cut(s) 9, 362, 405
BcuI ACTAGT 1 cut(s) 401
BfaI CTAG 1 cut(s) 402
BfmI CTRYAG 1 cut(s) 702
BisI GCNGC 1 cut(s) 368
BlsI GCNGC 1 cut(s) 369
Bme1390I CCNGG 2 cut(s) 29, 73
Bme18I GGWCC 1 cut(s) 65
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 2 cut(s) 29, 73
BmsI GCATC 2 cut(s) 205, 354
BpiI GAAGAC 1 cut(s) 290
BpmI CTGGAG 3 cut(s) 675, 771, 908
BpuEI CTTGAG 2 cut(s) 332, 344
BpuMI CCSGG 1 cut(s) 29
BsaHI GRCGYC 2 cut(s) 287, 503
BsaI GGTCTC 1 cut(s) 405
BsaJI CCNNGG 3 cut(s) 71, 72, 139
Bsc4I CCNNNNNNNGG 2 cut(s) 421, 886
Bse1I ACTGG 3 cut(s) 621, 658, 891
BseBI CCWGG 1 cut(s) 73
BseDI CCNNGG 3 cut(s) 71, 72, 139
BseGI GGATG 4 cut(s) 175, 390, 394, 484
BseLI CCNNNNNNNGG 2 cut(s) 421, 886
BseMII CTCAG 3 cut(s) 20, 461, 504
BseNI ACTGG 3 cut(s) 621, 658, 891
BseRI GAGGAG 1 cut(s) 581
BseXI GCAGC 1 cut(s) 379
BshFI GGCC 1 cut(s) 620
BsiHKAI GWGCWC 1 cut(s) 398
BsiSI CCGG 1 cut(s) 29
BslFI GGGAC 1 cut(s) 777
BslI CCNNNNNNNGG 2 cut(s) 421, 886
BsmAI GTCTC 3 cut(s) 9, 362, 405
BsmFI GGGAC 1 cut(s) 777
BsmI GAATGC 2 cut(s) 546, 616
BsnI GGCC 1 cut(s) 620
Bso31I GGTCTC 1 cut(s) 405
Bsp1286I GDGCHC 2 cut(s) 81, 398
Bsp143I GATC 5 cut(s) 351, 667, 715, 763, 800
BspACI CCGC 1 cut(s) 238
BspANI GGCC 1 cut(s) 620
BspCNI CTCAG 3 cut(s) 19, 462, 505
BspLI GGNNCC 1 cut(s) 78
BspMAI CTGCAG 1 cut(s) 706
BspPI GGATC 2 cut(s) 359, 808
BspTNI GGTCTC 1 cut(s) 405
BsrI ACTGG 3 cut(s) 621, 658, 891
BssECI CCNNGG 3 cut(s) 71, 72, 139
BssMI GATC 5 cut(s) 351, 667, 715, 763, 800
BssNI GRCGYC 2 cut(s) 287, 503
BssT1I CCWWGG 1 cut(s) 139
Bst2UI CCWGG 1 cut(s) 73
Bst4CI ACNGT 2 cut(s) 560, 848
Bst6I CTCTTC 1 cut(s) 599
BstACI GRCGYC 2 cut(s) 287, 503
BstC8I GCNNGC 1 cut(s) 226
BstDEI CTNAG 3 cut(s) 6, 470, 513
BstF5I GGATG 4 cut(s) 175, 390, 394, 484
BstKTI GATC 5 cut(s) 354, 670, 718, 766, 803
BstMAI GTCTC 3 cut(s) 9, 362, 405
BstMBI GATC 5 cut(s) 351, 667, 715, 763, 800
BstNI CCWGG 1 cut(s) 73
BstNSI RCATGY 1 cut(s) 866
BstSCI CCNGG 2 cut(s) 27, 71
BstSFI CTRYAG 1 cut(s) 702
BstV1I GCAGC 1 cut(s) 379
BstV2I GAAGAC 1 cut(s) 290
BstX2I RGATCY 1 cut(s) 800
BstYI RGATCY 1 cut(s) 800
BsuRI GGCC 1 cut(s) 620
BtsCI GGATG 4 cut(s) 175, 390, 394, 484
BtsI GCAGTG 4 cut(s) 696, 711, 744, 874
BtsIMutI CAGTG 7 cut(s) 14, 565, 614, 696, 711, 744, 874
Cac8I GCNNGC 1 cut(s) 226
Cfr13I GGNCC 1 cut(s) 65
CseI GACGC 1 cut(s) 492
CviAII CATG 3 cut(s) 46, 443, 863
DdeI CTNAG 3 cut(s) 6, 470, 513
DpnI GATC 5 cut(s) 353, 669, 717, 765, 802
DpnII GATC 5 cut(s) 351, 667, 715, 763, 800
EaeI YGGCCR 1 cut(s) 618
Eam1104I CTCTTC 1 cut(s) 599
EarI CTCTTC 1 cut(s) 599
Eco130I CCWWGG 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 81
Eco31I GGTCTC 1 cut(s) 405
Eco32I GATATC 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 65
Eco57I CTGAAG 2 cut(s) 180, 914
EcoRII CCWGG 1 cut(s) 71
EcoRV GATATC 1 cut(s) 136
EcoT14I CCWWGG 1 cut(s) 139
EcoT38I GRGCYC 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 139
FaeI CATG 3 cut(s) 49, 446, 866
FaqI GGGAC 1 cut(s) 777
FatI CATG 3 cut(s) 45, 442, 862
FblI GTMKAC 1 cut(s) 812
Fnu4HI GCNGC 1 cut(s) 368
FokI GGATG 4 cut(s) 182, 397, 401, 491
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 368
FspBI CTAG 1 cut(s) 402
GluI GCNGC 1 cut(s) 368
GsuI CTGGAG 3 cut(s) 675, 771, 908
HaeIII GGCC 1 cut(s) 620
HapII CCGG 1 cut(s) 29
HgaI GACGC 1 cut(s) 492
Hin1I GRCGYC 2 cut(s) 287, 503
Hin1II CATG 3 cut(s) 49, 446, 866
HincII GTYRAC 1 cut(s) 813
HindII GTYRAC 1 cut(s) 813
HindIII AAGCTT 2 cut(s) 162, 222
HinfI GANTC 5 cut(s) 182, 335, 493, 790, 871
HpaII CCGG 1 cut(s) 29
HphI GGTGA 3 cut(s) 113, 544, 653
Hpy166II GTNNAC 5 cut(s) 68, 661, 709, 757, 813
Hpy188I TCNGA 4 cut(s) 253, 454, 630, 870
Hpy188III TCNNGA 8 cut(s) 109, 262, 346, 361, 512, 750, 798, 851
Hpy8I GTNNAC 5 cut(s) 68, 661, 709, 757, 813
Hpy99I CGWCG 2 cut(s) 257, 508
HpyAV CCTTC 4 cut(s) 184, 190, 199, 325
HpyCH4III ACNGT 2 cut(s) 560, 848
HpyCH4IV ACGT 3 cut(s) 126, 153, 287
HpyCH4V TGCA 7 cut(s) 367, 442, 551, 614, 689, 704, 737
HpyF3I CTNAG 3 cut(s) 6, 470, 513
HpySE526I ACGT 3 cut(s) 126, 153, 287
Hsp92I GRCGYC 2 cut(s) 287, 503
Hsp92II CATG 3 cut(s) 49, 446, 866
Kzo9I GATC 5 cut(s) 351, 667, 715, 763, 800
LmnI GCTCC 4 cut(s) 76, 466, 594, 889
Lsp1109I GCAGC 1 cut(s) 379
LweI GCATC 2 cut(s) 205, 354
MaeI CTAG 1 cut(s) 402
MaeII ACGT 3 cut(s) 126, 153, 287
MaeIII GTNAC 2 cut(s) 122, 848
MalI GATC 5 cut(s) 353, 669, 717, 765, 802
MboI GATC 5 cut(s) 351, 667, 715, 763, 800
MboII GAAGA 6 cut(s) 295, 340, 488, 586, 795, 907
MflI RGATCY 1 cut(s) 800
MhlI GDGCHC 2 cut(s) 81, 398
MlsI TGGCCA 1 cut(s) 620
MluCI AATT 4 cut(s) 86, 231, 855, 913
MluNI TGGCCA 1 cut(s) 620
MlyI GAGTC 2 cut(s) 191, 799
MmeI TCCRAC 1 cut(s) 276
Mox20I TGGCCA 1 cut(s) 620
MroXI GAANNNNTTC 1 cut(s) 209
MscI TGGCCA 1 cut(s) 620
MseI TTAA 1 cut(s) 407
Msp20I TGGCCA 1 cut(s) 620
MspI CCGG 1 cut(s) 29
MspR9I CCNGG 2 cut(s) 29, 73
Mva1269I GAATGC 2 cut(s) 546, 616
MvaI CCWGG 1 cut(s) 73
NciI CCSGG 1 cut(s) 29
NdeII GATC 5 cut(s) 351, 667, 715, 763, 800
NlaIII CATG 3 cut(s) 49, 446, 866
NlaIV GGNNCC 1 cut(s) 78
NmuCI GTSAC 2 cut(s) 122, 848
NspI RCATGY 1 cut(s) 866
PasI CCCWGGG 1 cut(s) 72
PciI ACATGT 1 cut(s) 862
PctI GAATGC 2 cut(s) 546, 616
PdmI GAANNNNTTC 1 cut(s) 209
PfeI GAWTC 3 cut(s) 335, 493, 871
PflFI GACNNNGTC 1 cut(s) 257
PflMI CCANNNNNTGG 1 cut(s) 421
PkrI GCNGC 1 cut(s) 369
PleI GAGTC 2 cut(s) 190, 798
PpsI GAGTC 2 cut(s) 190, 798
PscI ACATGT 1 cut(s) 862
Psp6I CCWGG 1 cut(s) 71
PspGI CCWGG 1 cut(s) 71
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 1 cut(s) 65
PstI CTGCAG 1 cut(s) 706
PsuI RGATCY 1 cut(s) 800
PsyI GACNNNGTC 1 cut(s) 257
SalI GTCGAC 1 cut(s) 811
SaqAI TTAA 1 cut(s) 407
SatI GCNGC 1 cut(s) 368
Sau3AI GATC 5 cut(s) 351, 667, 715, 763, 800
Sau96I GGNCC 1 cut(s) 65
SchI GAGTC 2 cut(s) 191, 799
ScrFI CCNGG 2 cut(s) 29, 73
SduI GDGCHC 2 cut(s) 81, 398
SfaNI GCATC 2 cut(s) 205, 354
SfcI CTRYAG 1 cut(s) 702
SinI GGWCC 1 cut(s) 65
SmlI CTYRAG 2 cut(s) 311, 359
SmoI CTYRAG 2 cut(s) 311, 359
SpeI ACTAGT 1 cut(s) 401
Sse9I AATT 4 cut(s) 86, 231, 855, 913
SsiI CCGC 1 cut(s) 238
SspMI CTAG 1 cut(s) 402
StyD4I CCNGG 2 cut(s) 27, 71
StyI CCWWGG 1 cut(s) 139
TaaI ACNGT 2 cut(s) 560, 848
TaiI ACGT 3 cut(s) 129, 156, 290
TaqI TCGA 5 cut(s) 213, 345, 491, 579, 812
TasI AATT 4 cut(s) 86, 231, 855, 913
TfiI GAWTC 3 cut(s) 335, 493, 871
Tru1I TTAA 1 cut(s) 407
Tru9I TTAA 1 cut(s) 407
TscAI CASTG 7 cut(s) 14, 565, 621, 696, 711, 744, 881
TseFI GTSAC 2 cut(s) 122, 848
TseI GCWGC 1 cut(s) 367
Tsp45I GTSAC 2 cut(s) 122, 848
TspDTI ATGAA 3 cut(s) 203, 331, 588
TspRI CASTG 7 cut(s) 14, 565, 621, 696, 711, 744, 881
Tth111I GACNNNGTC 1 cut(s) 257
Van91I CCANNNNNTGG 1 cut(s) 421
VpaK11BI GGWCC 1 cut(s) 65
XapI RAATTY 2 cut(s) 86, 913
XceI RCATGY 1 cut(s) 866
XcmI CCANNNNNNNNNTGG 1 cut(s) 89
XmiI GTMKAC 1 cut(s) 812
XmnI GAANNNNTTC 1 cut(s) 209
XspI CTAG 1 cut(s) 402
ZraI GACGTC 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.