pycom02g01340

Long chain base biosynthesis protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
782575 .. 782851
277 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g01340.2

Sequence Viewer

Length: 216 bp
ATGTTCAAACAGTTGGTTCAAAAACAATGTCCACTTCTGAAAAATCCTTCATGCTTTGGCATAAAAGGTTGGGACATATCTAAAGAAAGAATCATCACCTTGAAAAAACAAAATATGTTCCCACAACTTGATTTTAGTGACTTCAAAGAATGTGTCGATTGTTTCAAAGGAAAACTCACCAACACGAGAAAATTAGGTTCAAACCGTATTGCGTAA

Protein Analysis

72

Amino Acids

8.25

Weight (kDa)

9.7

Isoelectric Point (pI)

16.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 6 cut(s) 7, 20, 103, 145, 166, 201
ArsI GACNNNNNNTTYG 4 cut(s) 13, 45, 138, 170
AsuHPI GGTGA 2 cut(s) 88, 169
BauI CACGAG 1 cut(s) 184
BslFI GGGAC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 86
BssSI CACGAG 1 cut(s) 184
Bst2BI CACGAG 1 cut(s) 184
Bst4CI ACNGT 2 cut(s) 12, 206
CviAII CATG 1 cut(s) 51
FaeI CATG 1 cut(s) 54
FaiI YATR 4 cut(s) 52, 62, 77, 116
FaqI GGGAC 1 cut(s) 86
FatI CATG 1 cut(s) 50
Hin1II CATG 1 cut(s) 54
HinfI GANTC 1 cut(s) 90
HphI GGTGA 2 cut(s) 88, 169
Hpy166II GTNNAC 1 cut(s) 32
Hpy188I TCNGA 1 cut(s) 39
Hpy8I GTNNAC 1 cut(s) 32
HpyAV CCTTC 1 cut(s) 57
HpyCH4III ACNGT 2 cut(s) 12, 206
Hsp92II CATG 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 137
MluCI AATT 1 cut(s) 191
NlaIII CATG 1 cut(s) 54
NmuCI GTSAC 1 cut(s) 137
PfeI GAWTC 1 cut(s) 90
SetI ASST 3 cut(s) 70, 101, 199
SgeI CNNG 5 cut(s) 63, 112, 140, 196, 198
Sse9I AATT 1 cut(s) 191
TaaI ACNGT 2 cut(s) 12, 206
TaqI TCGA 1 cut(s) 156
TasI AATT 1 cut(s) 191
TfiI GAWTC 1 cut(s) 90
TseFI GTSAC 1 cut(s) 137
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.