RchiOBHm_Chr2g0167631

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000278
Physical Location & Seq
Reverse (-)
82084070 .. 82085189
1120 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53540

Sequence Viewer

Length: 966 bp
ATGGGCAACGATGGTTACTCCAAGATTTCAGGAATTGGAGATATTTGTTTTGAGACCGATTTGGGCAACAAGCTTATGTTAAAAGATGTTAGATATGTTCCGGGTCTACGTCTCAATTTGATGTCAACTGGTGTGCTTGACCGACAAGGGTTTCATCATCATGGAGGTGATCAAAAGTGGAGGCTTACCAAGGGATCGTTGGTGATTGCTAGAGGGAAGATGTGTTGCACCCTCTATAAGACATATGGCAAAATATGCAAAGGAGAATTGAATGTTGCAGACGACTCTTCTCCAAGTCTATGGCACAAGCGACTAGGTCATATGAGTGAGAAGGGATTGCAAGTTTTGGCAAAGAAGTCTCTAATTCCCTTTGCCAAAGGTACCTCACTTGACTCTTGTGATTATTGTTTATTTGGTAAACAACATAAAGTTAGTTTCACAAGAACATTTACGAGGAAAGAAAATGTATTAGACCTAGTACACTCAGATGTATGTGGCCCTATGGAAGTTGAATCAGTAGGTCATAATAAATATTTTGTCACTTATATTGATGATGCTTCACGAAAGGTTTGGGTTTATTTGTTGAAAACAAAAGACCAGGTGTTTCAAACCTTTAAGGAATTTCATGCCATGGTGGAGAGGGAGACAGGGAGAACTCTCAAATGTATCCGTAGTGACAATGGCGGAGAGTACACTTCGAACGAGTTCAGAGATTATTGTTCGAAGCATGGCATCAAACACGTGAAGACAATTCCTGGCACCCCACAACATAATGGTGTCGCAGAGAGGATGAACCGCACCATTCTAGAAAAAGTGAGAAGCATGCTGAAGACGGCCAACCTGACAAAGAAGTTTTGGGGCGAAGCAATGACAACTGCATGTTACCTTATTAACCGAACACCATGTGTACCGTTGGGCTTGGAGACTCCCGAAGGCGTATGGACCGCAAAGATCAAAGCTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve zf-CCHC

Protein Analysis

321

Amino Acids

36.2

Weight (kDa)

9.33

Isoelectric Point (pI)

26.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pol_BBD PF22936 1 - 51 9.7e-11 Pol polyprotein, beta-barrel domain
gag_pre-integrs PF13976 78 - 141 9.1e-16 GAG-pre-integrase domain
rve PF00665 159 - 255 3.8e-14 Integrase core domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 380
AccB1I GGYRCC 2 cut(s) 380, 758
AccI GTMKAC 1 cut(s) 106
AciI CCGC 3 cut(s) 684, 796, 945
AclWI GGATC 1 cut(s) 202
AcoI YGGCCR 1 cut(s) 834
AcsI RAATTY 1 cut(s) 620
AcuI CTGAAG 1 cut(s) 848
AcvI CACGTG 1 cut(s) 742
AdeI CACNNNGTG 1 cut(s) 905
AfaI GTAC 4 cut(s) 382, 480, 692, 909
AflIII ACRYGT 1 cut(s) 739
AgsI TTSAA 4 cut(s) 271, 512, 586, 608
AjnI CCWGG 2 cut(s) 597, 754
AluBI AGCT 2 cut(s) 73, 959
AluI AGCT 2 cut(s) 73, 959
Alw26I GTCTC 5 cut(s) 47, 116, 363, 638, 917
AlwI GGATC 1 cut(s) 202
AoxI GGCC 2 cut(s) 496, 834
ApoI RAATTY 1 cut(s) 620
Asp700I GAANNNNTTC 1 cut(s) 704
Asp718I GGTACC 1 cut(s) 380
AspS9I GGNCC 2 cut(s) 497, 942
AsuC2I CCSGG 1 cut(s) 102
AsuHPI GGTGA 2 cut(s) 179, 214
AsuII TTCGAA 2 cut(s) 698, 722
AvaII GGWCC 1 cut(s) 942
BanI GGYRCC 2 cut(s) 380, 758
BbrPI CACGTG 1 cut(s) 742
BbsI GAAGAC 2 cut(s) 752, 836
BccI CCATC 1 cut(s) 5
BceAI ACGGC 1 cut(s) 849
BciT130I CCWGG 2 cut(s) 599, 756
BciVI GTATCC 1 cut(s) 677
BclI TGATCA 1 cut(s) 169
BcnI CCSGG 1 cut(s) 102
BcoDI GTCTC 5 cut(s) 47, 116, 363, 638, 917
BfaI CTAG 4 cut(s) 210, 314, 476, 806
BfuI GTATCC 1 cut(s) 677
Bme1390I CCNGG 3 cut(s) 102, 599, 756
Bme18I GGWCC 1 cut(s) 942
BmgT120I GGNCC 2 cut(s) 497, 942
BmiI GGNNCC 2 cut(s) 382, 760
BmrFI CCNGG 3 cut(s) 102, 599, 756
BmsI GCATC 2 cut(s) 544, 741
BpiI GAAGAC 2 cut(s) 752, 836
Bpu14I TTCGAA 2 cut(s) 698, 722
BpuMI CCSGG 1 cut(s) 102
BsaAI YACGTR 1 cut(s) 742
BsaI GGTCTC 1 cut(s) 47
BsaJI CCNNGG 2 cut(s) 189, 630
Bse1I ACTGG 1 cut(s) 133
Bse3DI GCAATG 1 cut(s) 873
BseBI CCWGG 2 cut(s) 599, 756
BseDI CCNNGG 2 cut(s) 189, 630
BseGI GGATG 1 cut(s) 795
BseMI GCAATG 1 cut(s) 873
BseMII CTCAG 1 cut(s) 498
BseNI ACTGG 1 cut(s) 133
BshFI GGCC 2 cut(s) 498, 836
BshNI GGYRCC 2 cut(s) 380, 758
BsiSI CCGG 1 cut(s) 101
BsmAI GTCTC 5 cut(s) 47, 116, 363, 638, 917
BsmBI CGTCTC 1 cut(s) 116
BsnI GGCC 2 cut(s) 498, 836
Bso31I GGTCTC 1 cut(s) 47
Bsp119I TTCGAA 2 cut(s) 698, 722
Bsp143I GATC 3 cut(s) 169, 194, 951
Bsp19I CCATGG 1 cut(s) 630
BspACI CCGC 3 cut(s) 684, 796, 945
BspANI GGCC 2 cut(s) 498, 836
BspCNI CTCAG 1 cut(s) 497
BspLI GGNNCC 2 cut(s) 382, 760
BspPI GGATC 1 cut(s) 202
BspT104I TTCGAA 2 cut(s) 698, 722
BspT107I GGYRCC 2 cut(s) 380, 758
BspTNI GGTCTC 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 873
BsrI ACTGG 1 cut(s) 133
BssECI CCNNGG 2 cut(s) 189, 630
BssMI GATC 3 cut(s) 169, 194, 951
BssT1I CCWWGG 2 cut(s) 189, 630
Bst2UI CCWGG 2 cut(s) 599, 756
Bst4CI ACNGT 1 cut(s) 912
Bst6I CTCTTC 1 cut(s) 292
BstAPI GCANNNNNTGC 1 cut(s) 255
BstBAI YACGTR 1 cut(s) 742
BstBI TTCGAA 2 cut(s) 698, 722
BstC8I GCNNGC 1 cut(s) 824
BstDEI CTNAG 1 cut(s) 484
BstDSI CCRYGG 1 cut(s) 630
BstF5I GGATG 1 cut(s) 795
BstKTI GATC 3 cut(s) 172, 197, 954
BstMAI GTCTC 5 cut(s) 47, 116, 363, 638, 917
BstMBI GATC 3 cut(s) 169, 194, 951
BstMWI GCNNNNNNNGC 1 cut(s) 255
BstNI CCWGG 2 cut(s) 599, 756
BstNSI RCATGY 2 cut(s) 826, 882
BstSCI CCNGG 3 cut(s) 100, 597, 754
BstV2I GAAGAC 2 cut(s) 752, 836
BstXI CCANNNNNNTGG 1 cut(s) 300
BsuI GTATCC 1 cut(s) 677
BsuRI GGCC 2 cut(s) 498, 836
BtgI CCRYGG 1 cut(s) 630
BtsCI GGATG 1 cut(s) 795
Cac8I GCNNGC 1 cut(s) 824
Cfr13I GGNCC 2 cut(s) 497, 942
CsiI ACCWGGT 1 cut(s) 597
Csp6I GTAC 4 cut(s) 381, 479, 691, 908
CviAII CATG 7 cut(s) 161, 626, 631, 728, 823, 879, 903
CviJI RGCY 6 cut(s) 73, 184, 498, 836, 918, 959
CviKI_1 RGCY 6 cut(s) 73, 184, 498, 836, 918, 959
CviQI GTAC 4 cut(s) 381, 479, 691, 908
DdeI CTNAG 1 cut(s) 484
DpnI GATC 3 cut(s) 171, 196, 953
DpnII GATC 3 cut(s) 169, 194, 951
DraIII CACNNNGTG 1 cut(s) 905
EaeI YGGCCR 1 cut(s) 834
Eam1104I CTCTTC 1 cut(s) 292
EarI CTCTTC 1 cut(s) 292
EciI GGCGGA 1 cut(s) 699
Eco130I CCWWGG 2 cut(s) 189, 630
Eco31I GGTCTC 1 cut(s) 47
Eco47I GGWCC 1 cut(s) 942
Eco57I CTGAAG 1 cut(s) 848
Eco72I CACGTG 1 cut(s) 742
EcoRII CCWGG 2 cut(s) 597, 754
EcoT14I CCWWGG 2 cut(s) 189, 630
ErhI CCWWGG 2 cut(s) 189, 630
Esp3I CGTCTC 1 cut(s) 116
FaeI CATG 7 cut(s) 164, 629, 634, 731, 826, 882, 906
FatI CATG 7 cut(s) 160, 625, 630, 727, 822, 878, 902
FauNDI CATATG 2 cut(s) 244, 321
FbaI TGATCA 1 cut(s) 169
FblI GTMKAC 1 cut(s) 106
FokI GGATG 1 cut(s) 802
FspBI CTAG 4 cut(s) 210, 314, 476, 806
HaeIII GGCC 2 cut(s) 498, 836
HapII CCGG 1 cut(s) 101
Hin1II CATG 7 cut(s) 164, 629, 634, 731, 826, 882, 906
HincII GTYRAC 1 cut(s) 126
HindII GTYRAC 1 cut(s) 126
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 4 cut(s) 284, 392, 512, 925
HpaII CCGG 1 cut(s) 101
HphI GGTGA 2 cut(s) 179, 214
Hpy166II GTNNAC 6 cut(s) 107, 126, 419, 481, 693, 908
Hpy188I TCNGA 2 cut(s) 487, 710
Hpy188III TCNNGA 4 cut(s) 30, 561, 806, 929
Hpy8I GTNNAC 6 cut(s) 107, 126, 419, 481, 693, 908
HpyAV CCTTC 2 cut(s) 325, 926
HpyCH4III ACNGT 1 cut(s) 912
HpyCH4IV ACGT 2 cut(s) 109, 741
HpyCH4V TGCA 5 cut(s) 228, 258, 278, 340, 878
HpyF10VI GCNNNNNNNGC 1 cut(s) 255
HpyF3I CTNAG 1 cut(s) 484
HpySE526I ACGT 2 cut(s) 109, 741
Hsp92II CATG 7 cut(s) 164, 629, 634, 731, 826, 882, 906
KpnI GGTACC 1 cut(s) 384
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 3 cut(s) 169, 194, 951
LweI GCATC 2 cut(s) 544, 741
MabI ACCWGGT 1 cut(s) 597
MaeI CTAG 4 cut(s) 210, 314, 476, 806
MaeII ACGT 2 cut(s) 109, 741
MaeIII GTNAC 4 cut(s) 14, 538, 674, 881
MalI GATC 3 cut(s) 171, 196, 953
MboI GATC 3 cut(s) 169, 194, 951
MboII GAAGA 4 cut(s) 229, 279, 757, 841
MluCI AATT 6 cut(s) 33, 115, 266, 363, 620, 750
MlyI GAGTC 3 cut(s) 278, 386, 919
MnlI CCTC 8 cut(s) 158, 174, 206, 242, 394, 447, 633, 780
MroXI GAANNNNTTC 1 cut(s) 704
MseI TTAA 3 cut(s) 80, 615, 891
MslI CAYNNNNRTG 5 cut(s) 159, 165, 324, 486, 774
MspI CCGG 1 cut(s) 101
MspR9I CCNGG 3 cut(s) 102, 599, 756
MvaI CCWGG 2 cut(s) 599, 756
MwoI GCNNNNNNNGC 1 cut(s) 255
NciI CCSGG 1 cut(s) 102
NcoI CCATGG 1 cut(s) 630
NdeI CATATG 2 cut(s) 244, 321
NdeII GATC 3 cut(s) 169, 194, 951
NlaIII CATG 7 cut(s) 164, 629, 634, 731, 826, 882, 906
NlaIV GGNNCC 2 cut(s) 382, 760
NmuCI GTSAC 2 cut(s) 538, 674
NspI RCATGY 2 cut(s) 826, 882
NspV TTCGAA 2 cut(s) 698, 722
PaeI GCATGC 1 cut(s) 826
PdmI GAANNNNTTC 1 cut(s) 704
PfeI GAWTC 1 cut(s) 512
PflFI GACNNNGTC 1 cut(s) 315
PleI GAGTC 3 cut(s) 278, 386, 919
PmaCI CACGTG 1 cut(s) 742
PmlI CACGTG 1 cut(s) 742
PpsI GAGTC 3 cut(s) 278, 386, 919
Ppu21I YACGTR 1 cut(s) 742
Psp6I CCWGG 2 cut(s) 597, 754
PspCI CACGTG 1 cut(s) 742
PspGI CCWGG 2 cut(s) 597, 754
PspN4I GGNNCC 2 cut(s) 382, 760
PspPI GGNCC 2 cut(s) 497, 942
PsyI GACNNNGTC 1 cut(s) 315
RsaI GTAC 4 cut(s) 382, 480, 692, 909
RsaNI GTAC 4 cut(s) 381, 479, 691, 908
RseI CAYNNNNRTG 5 cut(s) 159, 165, 324, 486, 774
SaqAI TTAA 3 cut(s) 80, 615, 891
Sau3AI GATC 3 cut(s) 169, 194, 951
Sau96I GGNCC 2 cut(s) 497, 942
SchI GAGTC 3 cut(s) 278, 386, 919
ScrFI CCNGG 3 cut(s) 102, 599, 756
SexAI ACCWGGT 1 cut(s) 597
SfaNI GCATC 2 cut(s) 544, 741
SfuI TTCGAA 2 cut(s) 698, 722
SinI GGWCC 1 cut(s) 942
SmiMI CAYNNNNRTG 5 cut(s) 159, 165, 324, 486, 774
SphI GCATGC 1 cut(s) 826
Sse9I AATT 6 cut(s) 33, 115, 266, 363, 620, 750
SsiI CCGC 3 cut(s) 684, 796, 945
SspI AATATT 1 cut(s) 533
SspMI CTAG 4 cut(s) 210, 314, 476, 806
StyD4I CCNGG 3 cut(s) 100, 597, 754
StyI CCWWGG 2 cut(s) 189, 630
TaaI ACNGT 1 cut(s) 912
TaiI ACGT 2 cut(s) 112, 744
TaqI TCGA 2 cut(s) 698, 722
TaqII GACCGA 2 cut(s) 71, 156
TasI AATT 6 cut(s) 33, 115, 266, 363, 620, 750
TatI WGTACW 2 cut(s) 478, 690
TfiI GAWTC 1 cut(s) 512
Tru1I TTAA 3 cut(s) 80, 615, 891
Tru9I TTAA 3 cut(s) 80, 615, 891
TseFI GTSAC 2 cut(s) 538, 674
Tsp45I GTSAC 2 cut(s) 538, 674
TspDTI ATGAA 3 cut(s) 143, 614, 806
TspGWI ACGGA 1 cut(s) 659
Tth111I GACNNNGTC 1 cut(s) 315
VpaK11BI GGWCC 1 cut(s) 942
XapI RAATTY 1 cut(s) 620
XbaI TCTAGA 1 cut(s) 805
XceI RCATGY 2 cut(s) 826, 882
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
XmiI GTMKAC 1 cut(s) 106
XmnI GAANNNNTTC 1 cut(s) 704
XspI CTAG 4 cut(s) 210, 314, 476, 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.