pycom13g09380

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000278
Physical Location & Seq
Reverse (-)
6297286 .. 6298704
1419 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g09380.1

Sequence Viewer

Length: 1419 bp
ATGACCAAGAGCGCAGAAAATCGGCTCTTCTTGAAAAAGCGACTCTTCCGATTTCAGTATCGTCCAGGTATTACTATGCACGAACACCTCAATGATTATAATAAAATACTTGCTGATTTGGCAAACCTTGATGTGAAAATTCCTGACGAGGATAAGGCACTATGTTTGTTAAATTCATTGCCTGATGATTATGATCATTTGACAACTACTCTGTTGTATGGAAAATCCGAGGTGAAACTTGATGAGGTGTCTGCGGCATTGGTGAATCATGAGTGTCGTAAGAAGGAACTGAAGACTCACAATTCACAAACCGAGGCATTTTTTGCAAGGGGTCGAACAGAGGAAAGAAAATCTGGGAAGCGGGGAAAATCTCGTTCAAAGTCACGAGGGAAGTTTCCTGCTAAAGATGAATGTGCCTTTTGTCGCCAAAAGGGTCATTGGAAGAAAGACTGCCCCAAATTGAAGAACAAAGAGAAGGAGAAAGCGGGTTCTGAAGCAAATATTGCAAAATCTGGAGATGATGATTTCGAGTTTGCTTTGGCTAGTTCATCTGCTGATGGTCACTCCAAGGAGTGGATTTTGGATTCAGGTTGCACCTATCATATATGTCCCATTCGAGAATGGTTTTCTAGCTTCGAGGAGCTGGGTGGTGGAGTTGTTTTGATGGGTAATGATAATGCCTGCAAAACACAAGGGATAGGCAAAATCTGTTTGAAGATGCATGATGGAACAGTCAGAGAATTAAGTGATGTTCGGTATGTACCGGATATGAAGAAAAACCTTATCTCTCTGGGAGCTTTGGAATCCAAGGGTCTCAAGATCACCATGAAGGGTGGAGTTCTTAAAGCTGTTTATGGGGCACTGGTGGTGATGAAAGGTACAAGACGAAATAACTTGTATTTCTTGCAGGGGAGTACAGTTATTGGTGAAGCAGCTGTCACCGAAGCTGCTGACGCAGATAGCACAGACACCACGAGGTTATGGCATATGCGTCTTGGGCATGCTGGTGAAAAAGCGTTGCAAGGATTGGTGAAGCAAGGCTTATTGAAAGGTGCAAAGGCATGCAAATTGGAATTCTGTGAGCATTGTGTGTTGGGTAAGCAAACTAGAGTAAAATTTGGCATTGCTATTCACCACACTAAAGGCATTCTTGATTATGTTCACACTGATGTTTGGGGACCTTCCAAGAATGCATCTTGGGGAGGTAGCCATTATTTTGTCTCTTTTGTTGATGACTTCTCTAGAAGAATATGGGTGTACACCATGAAGCGTAAAGATGAAGTCTTGAAGATATTCCTGAAGTGGAAAAAGATGATTGAAACGCAAAGCGGTCGAAAGATCAAGACTCTCAGATCAGACAATGGGGGTGAATATAAGTCTGATCCTTTCTTGAAAGTTTGCAAGATGAGGGTATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC PAH

Protein Analysis

473

Amino Acids

53.2

Weight (kDa)

9.39

Isoelectric Point (pI)

35.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 3 - 96 2.8e-17 gag-polypeptide of LTR copia-type
Pol_BBD PF22936 192 - 271 2.9e-31 Pol polyprotein, beta-barrel domain
gag_pre-integrs PF13976 298 - 368 7.1e-18 GAG-pre-integrase domain
rve PF00665 387 - 468 1.2e-10 Integrase core domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 99
AccB7I CCANNNNNTGG 1 cut(s) 573
AciI CCGC 4 cut(s) 254, 361, 485, 1329
AclWI GGATC 1 cut(s) 1376
AcsI RAATTY 4 cut(s) 138, 172, 1073, 1115
AcuI CTGAAG 3 cut(s) 311, 513, 1319
AfaI GTAC 4 cut(s) 762, 880, 916, 1259
AfiI CCNNNNNNNGG 1 cut(s) 573
AgsI TTSAA 8 cut(s) 34, 378, 463, 715, 1048, 1288, 1319, 1393
AjnI CCWGG 1 cut(s) 64
AluBI AGCT 6 cut(s) 633, 643, 797, 848, 935, 947
AluI AGCT 6 cut(s) 633, 643, 797, 848, 935, 947
Alw26I GTCTC 2 cut(s) 818, 1225
AlwI GGATC 1 cut(s) 1376
ApeKI GCWGC 2 cut(s) 932, 947
ApoI RAATTY 4 cut(s) 138, 172, 1073, 1115
Asp700I GAANNNNTTC 1 cut(s) 1292
AspLEI GCGC 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 1178
AvaII GGWCC 1 cut(s) 1178
BaeGI GKGCMC 1 cut(s) 862
BauI CACGAG 2 cut(s) 384, 973
BbsI GAAGAC 1 cut(s) 299
BbvI GCAGC 2 cut(s) 934, 944
BccI CCATC 3 cut(s) 551, 658, 719
BcgI CGANNNNNNTGC 2 cut(s) 1313, 1347
BciT130I CCWGG 1 cut(s) 66
BclI TGATCA 1 cut(s) 193
BcoDI GTCTC 2 cut(s) 818, 1225
BfaI CTAG 4 cut(s) 543, 630, 1107, 1242
BisI GCNGC 3 cut(s) 255, 933, 948
BlsI GCNGC 3 cut(s) 256, 934, 949
Bme1390I CCNGG 1 cut(s) 66
Bme18I GGWCC 1 cut(s) 1178
BmgT120I GGNCC 1 cut(s) 1178
BmiI GGNNCC 1 cut(s) 1179
BmrFI CCNGG 1 cut(s) 66
BmsI GCATC 2 cut(s) 708, 1202
BpiI GAAGAC 1 cut(s) 299
BpmI CTGGAG 1 cut(s) 534
BpuEI CTTGAG 1 cut(s) 800
BsaBI GATNNNNATC 1 cut(s) 192
BsaI GGTCTC 1 cut(s) 818
BsaJI CCNNGG 4 cut(s) 228, 312, 567, 807
BsaWI WCCGGW 1 cut(s) 763
Bsc4I CCNNNNNNNGG 1 cut(s) 573
Bse1I ACTGG 1 cut(s) 867
Bse3DI GCAATG 2 cut(s) 176, 1122
Bse8I GATNNNNATC 1 cut(s) 192
BseBI CCWGG 1 cut(s) 66
BseDI CCNNGG 4 cut(s) 228, 312, 567, 807
BseJI GATNNNNATC 1 cut(s) 192
BseLI CCNNNNNNNGG 1 cut(s) 573
BseMI GCAATG 2 cut(s) 176, 1122
BseMII CTCAG 1 cut(s) 1363
BseNI ACTGG 1 cut(s) 867
BseRI GAGGAG 1 cut(s) 653
BseSI GKGCMC 1 cut(s) 862
BseXI GCAGC 2 cut(s) 934, 944
BseYI CCCAGC 1 cut(s) 643
Bsh1285I CGRYCG 1 cut(s) 1333
BsiEI CGRYCG 1 cut(s) 1333
BsiSI CCGG 1 cut(s) 764
BslFI GGGAC 2 cut(s) 594, 1191
BslI CCNNNNNNNGG 1 cut(s) 573
BsmAI GTCTC 2 cut(s) 818, 1225
BsmFI GGGAC 2 cut(s) 594, 1191
BsmI GAATGC 2 cut(s) 1146, 1195
Bso31I GGTCTC 1 cut(s) 818
Bsp1286I GDGCHC 1 cut(s) 862
Bsp1407I TGTACA 1 cut(s) 1257
Bsp143I GATC 5 cut(s) 193, 819, 1338, 1352, 1381
BspACI CCGC 4 cut(s) 254, 361, 485, 1329
BspCNI CTCAG 1 cut(s) 1362
BspHI TCATGA 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 1179
BspPI GGATC 1 cut(s) 1376
BspQI GCTCTTC 1 cut(s) 32
BspTNI GGTCTC 1 cut(s) 818
BsrDI GCAATG 2 cut(s) 176, 1122
BsrGI TGTACA 1 cut(s) 1257
BsrI ACTGG 1 cut(s) 867
BssECI CCNNGG 4 cut(s) 228, 312, 567, 807
BssMI GATC 5 cut(s) 193, 819, 1338, 1352, 1381
BssSI CACGAG 2 cut(s) 384, 973
BssT1I CCWWGG 2 cut(s) 567, 807
Bst2BI CACGAG 2 cut(s) 384, 973
Bst2UI CCWGG 1 cut(s) 66
Bst4CI ACNGT 2 cut(s) 733, 919
Bst6I CTCTTC 2 cut(s) 32, 50
BstAPI GCANNNNNTGC 2 cut(s) 323, 503
BstAUI TGTACA 1 cut(s) 1257
BstC8I GCNNGC 3 cut(s) 682, 1002, 1063
BstDEI CTNAG 1 cut(s) 1349
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 5 cut(s) 196, 822, 1341, 1355, 1384
BstMAI GTCTC 2 cut(s) 818, 1225
BstMBI GATC 5 cut(s) 193, 819, 1338, 1352, 1381
BstMCI CGRYCG 1 cut(s) 1333
BstMWI GCNNNNNNNGC 5 cut(s) 119, 323, 503, 953, 997
BstNI CCWGG 1 cut(s) 66
BstNSI RCATGY 2 cut(s) 1004, 1065
BstSCI CCNGG 1 cut(s) 64
BstSLI GKGCMC 1 cut(s) 862
BstV1I GCAGC 2 cut(s) 934, 944
BstV2I GAAGAC 1 cut(s) 299
BtsIMutI CAGTG 2 cut(s) 860, 1164
Cac8I GCNNGC 3 cut(s) 682, 1002, 1063
CciI TCATGA 1 cut(s) 268
CfoI GCGC 1 cut(s) 14
Cfr13I GGNCC 1 cut(s) 1178
CseI GACGC 2 cut(s) 962, 980
Csp6I GTAC 4 cut(s) 761, 879, 915, 1258
CviAII CATG 6 cut(s) 269, 722, 826, 1001, 1062, 1264
CviQI GTAC 4 cut(s) 761, 879, 915, 1258
DdeI CTNAG 1 cut(s) 1349
DpnI GATC 5 cut(s) 195, 821, 1340, 1354, 1383
DpnII GATC 5 cut(s) 193, 819, 1338, 1352, 1381
Eam1104I CTCTTC 2 cut(s) 32, 50
EarI CTCTTC 2 cut(s) 32, 50
Eco130I CCWWGG 2 cut(s) 567, 807
Eco31I GGTCTC 1 cut(s) 818
Eco47I GGWCC 1 cut(s) 1178
Eco57I CTGAAG 3 cut(s) 311, 513, 1319
EcoO109I RGGNCCY 1 cut(s) 1178
EcoRI GAATTC 1 cut(s) 1073
EcoRII CCWGG 1 cut(s) 64
EcoT14I CCWWGG 2 cut(s) 567, 807
EcoT22I ATGCAT 2 cut(s) 723, 1195
ErhI CCWWGG 2 cut(s) 567, 807
FaeI CATG 6 cut(s) 272, 725, 829, 1004, 1065, 1267
FalI AAGNNNNNCTT 6 cut(s) 29, 61, 1025, 1057, 1134, 1166
FaqI GGGAC 2 cut(s) 594, 1191
FatI CATG 6 cut(s) 268, 721, 825, 1000, 1061, 1263
FauI CCCGC 2 cut(s) 354, 478
FauNDI CATATG 1 cut(s) 987
FbaI TGATCA 1 cut(s) 193
Fnu4HI GCNGC 3 cut(s) 255, 933, 948
Fsp4HI GCNGC 3 cut(s) 255, 933, 948
FspBI CTAG 4 cut(s) 543, 630, 1107, 1242
GlaI GCGC 1 cut(s) 13
GluI GCNGC 3 cut(s) 255, 933, 948
GsaI CCCAGC 1 cut(s) 647
GsuI CTGGAG 1 cut(s) 534
HapII CCGG 1 cut(s) 764
HgaI GACGC 2 cut(s) 962, 980
HhaI GCGC 1 cut(s) 14
Hin1II CATG 6 cut(s) 272, 725, 829, 1004, 1065, 1267
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HinfI GANTC 6 cut(s) 42, 265, 295, 584, 803, 1345
HpaII CCGG 1 cut(s) 764
Hpy166II GTNNAC 3 cut(s) 1162, 1258, 1260
Hpy188I TCNGA 7 cut(s) 50, 229, 493, 737, 1352, 1357, 1381
Hpy8I GTNNAC 3 cut(s) 1162, 1258, 1260
HpyAV CCTTC 4 cut(s) 277, 469, 823, 1191
HpyCH4III ACNGT 2 cut(s) 733, 919
HpyF10VI GCNNNNNNNGC 5 cut(s) 119, 323, 503, 953, 997
HpyF3I CTNAG 1 cut(s) 1349
Hsp92II CATG 6 cut(s) 272, 725, 829, 1004, 1065, 1267
HspAI GCGC 1 cut(s) 12
Ksp22I TGATCA 1 cut(s) 193
Kzo9I GATC 5 cut(s) 193, 819, 1338, 1352, 1381
LguI GCTCTTC 1 cut(s) 32
LmnI GCTCC 2 cut(s) 640, 794
Lsp1109I GCAGC 2 cut(s) 934, 944
LweI GCATC 2 cut(s) 708, 1202
MaeI CTAG 4 cut(s) 543, 630, 1107, 1242
MaeIII GTNAC 3 cut(s) 381, 560, 937
MalI GATC 5 cut(s) 195, 821, 1340, 1354, 1383
MboI GATC 5 cut(s) 193, 819, 1338, 1352, 1381
MboII GAAGA 9 cut(s) 19, 37, 304, 454, 475, 727, 784, 1257, 1300
MhlI GDGCHC 1 cut(s) 862
MluCI AATT 8 cut(s) 138, 172, 301, 458, 740, 1067, 1073, 1115
MlyI GAGTC 3 cut(s) 36, 289, 1339
Mph1103I ATGCAT 2 cut(s) 723, 1195
MroXI GAANNNNTTC 1 cut(s) 1292
MseI TTAA 3 cut(s) 170, 743, 843
MslI CAYNNNNRTG 3 cut(s) 90, 1005, 1167
MspA1I CMGCKG 1 cut(s) 935
MspI CCGG 1 cut(s) 764
MspR9I CCNGG 1 cut(s) 66
Mva1269I GAATGC 2 cut(s) 1146, 1195
MvaI CCWGG 1 cut(s) 66
MwoI GCNNNNNNNGC 5 cut(s) 119, 323, 503, 953, 997
NdeI CATATG 1 cut(s) 987
NdeII GATC 5 cut(s) 193, 819, 1338, 1352, 1381
NlaIII CATG 6 cut(s) 272, 725, 829, 1004, 1065, 1267
NlaIV GGNNCC 1 cut(s) 1179
NmuCI GTSAC 3 cut(s) 381, 560, 937
NsiI ATGCAT 2 cut(s) 723, 1195
NspI RCATGY 2 cut(s) 1004, 1065
PaeI GCATGC 2 cut(s) 1004, 1065
PagI TCATGA 1 cut(s) 268
PciSI GCTCTTC 1 cut(s) 32
PctI GAATGC 2 cut(s) 1146, 1195
PdmI GAANNNNTTC 1 cut(s) 1292
PfeI GAWTC 3 cut(s) 265, 584, 803
PflMI CCANNNNNTGG 1 cut(s) 573
PkrI GCNGC 3 cut(s) 256, 934, 949
PleI GAGTC 3 cut(s) 36, 289, 1339
PpsI GAGTC 3 cut(s) 36, 289, 1339
PpuMI RGGWCCY 1 cut(s) 1178
PsiI TTATAA 1 cut(s) 99
Psp5II RGGWCCY 1 cut(s) 1178
Psp6I CCWGG 1 cut(s) 64
PspFI CCCAGC 1 cut(s) 643
PspGI CCWGG 1 cut(s) 64
PspN4I GGNNCC 1 cut(s) 1179
PspPI GGNCC 1 cut(s) 1178
PspPPI RGGWCCY 1 cut(s) 1178
PvuII CAGCTG 1 cut(s) 935
RsaI GTAC 4 cut(s) 762, 880, 916, 1259
RsaNI GTAC 4 cut(s) 761, 879, 915, 1258
RseI CAYNNNNRTG 3 cut(s) 90, 1005, 1167
SapI GCTCTTC 1 cut(s) 32
SaqAI TTAA 3 cut(s) 170, 743, 843
SatI GCNGC 3 cut(s) 255, 933, 948
Sau3AI GATC 5 cut(s) 193, 819, 1338, 1352, 1381
Sau96I GGNCC 1 cut(s) 1178
SchI GAGTC 3 cut(s) 36, 289, 1339
ScrFI CCNGG 1 cut(s) 66
SduI GDGCHC 1 cut(s) 862
SfaNI GCATC 2 cut(s) 708, 1202
SinI GGWCC 1 cut(s) 1178
SmiMI CAYNNNNRTG 3 cut(s) 90, 1005, 1167
SmlI CTYRAG 1 cut(s) 815
SmoI CTYRAG 1 cut(s) 815
SphI GCATGC 2 cut(s) 1004, 1065
Sse9I AATT 8 cut(s) 138, 172, 301, 458, 740, 1067, 1073, 1115
SsiI CCGC 4 cut(s) 254, 361, 485, 1329
SspI AATATT 1 cut(s) 502
SspMI CTAG 4 cut(s) 543, 630, 1107, 1242
StyD4I CCNGG 1 cut(s) 64
StyI CCWWGG 2 cut(s) 567, 807
TaaI ACNGT 2 cut(s) 733, 919
TaqI TCGA 5 cut(s) 334, 528, 616, 636, 1333
TasI AATT 8 cut(s) 138, 172, 301, 458, 740, 1067, 1073, 1115
TatI WGTACW 2 cut(s) 914, 1257
TauI GCSGC 1 cut(s) 257
TfiI GAWTC 3 cut(s) 265, 584, 803
Tru1I TTAA 3 cut(s) 170, 743, 843
Tru9I TTAA 3 cut(s) 170, 743, 843
TscAI CASTG 2 cut(s) 867, 1171
TseFI GTSAC 3 cut(s) 381, 560, 937
TseI GCWGC 2 cut(s) 932, 947
Tsp45I GTSAC 3 cut(s) 381, 560, 937
TspDTI ATGAA 8 cut(s) 165, 423, 537, 785, 842, 887, 1280, 1293
TspRI CASTG 2 cut(s) 867, 1171
Van91I CCANNNNNTGG 1 cut(s) 573
VpaK11BI GGWCC 1 cut(s) 1178
XapI RAATTY 4 cut(s) 138, 172, 1073, 1115
XbaI TCTAGA 1 cut(s) 1241
XceI RCATGY 2 cut(s) 1004, 1065
XmnI GAANNNNTTC 1 cut(s) 1292
XspI CTAG 4 cut(s) 543, 630, 1107, 1242
Zsp2I ATGCAT 2 cut(s) 723, 1195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.