Rh2BG287000

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000278
Physical Location & Seq
Forward (+)
31670235 .. 31671185
951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG287000.1

Sequence Viewer

Length: 951 bp
ATGGATGGCAATGCGATTGCTAATCTGCATCTAGCACTAGCCGATGAAGTATTGTCAAGTGTGGTGGAGAAGAAGACGGCAAAAGAGATATGGGATACACTCACAAAATTGTACGAGGTCAAATCACTACACAACAAAATCTTCTTGAAGAGAAAACTTTACACCCTAAGGATGATGGAGTCGACTACAATGACCGACCACATCAACACACTCAACACCTTGTTCTCACAGCTCACAGCAATAGGGCATAACATAGAGACGGGTGAACGTGCTGAAATTATACTTCAAAGTCTACCTAATTCGTATGATCAACTCATCATCAACTTAACCAACAATCTAGAAATACTAGTCTTCGATGATATTGCAGCTGCGGTTCTTGAAGAAGAAAGTCAGCGCAAGAGCAAAGAAGATAGATTGGGAGGCTCACAACAGGGCGAAGCTTTGATGATAACGAGAGGGAGATCAACGGAACGTGGCCCCAGTGGGAGTCAAACTCAGAGTAGATCAAAATCCAGAAGTAAGAAGAATGTCAAGTGTCATCACTGTGGCAAGAAAGGGCACTATAAAAGGGAGTGTTGGCGTCTTAAGAAGAATGAAGAAACCAAAGGAAAAGGTCCTGAGTCATCAAGAGCTCAGGGTTGTGTAGCAAGCACCTCAGATGATGGTGAAGTCTTATACAGCGAGGCAACAACAGTTACTGAAGGGAGGAGAAAATTTGCTGATATTTGGCTTATGGACTCAGGAGCAACATGGCATATGACCCCCTGGAGAGAATGGTTCCACCAATATGAACCCATCTCAAGAGGAACTGTGTTCATGGGAGATGATTATCCCTATGAGATCGCTGGTATTGGTACCATCAAAGTGAAGATGTATGATGGTACAGTTCACACCATTCAGGAGGTACGGCATGTGAAAGGCCTGAAGAAAAATCTATTGTCTTGGGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
rve

Protein Analysis

316

Amino Acids

35.79

Weight (kDa)

8.7

Isoelectric Point (pI)

47.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 3 - 136 7.3e-31 gag-polypeptide of LTR copia-type
Pol_BBD PF22936 243 - 315 5e-25 Pol polyprotein, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 854
AccB1I GGYRCC 1 cut(s) 854
AccI GTMKAC 2 cut(s) 182, 292
AciI CCGC 1 cut(s) 371
AcsI RAATTY 1 cut(s) 713
AcuI CTGAAG 2 cut(s) 720, 944
AcyI GRCGYC 1 cut(s) 580
AfaI GTAC 4 cut(s) 113, 856, 883, 906
AflII CTTAAG 1 cut(s) 584
AgsI TTSAA 3 cut(s) 148, 287, 380
AhlI ACTAGT 1 cut(s) 346
AjnI CCWGG 1 cut(s) 764
AluBI AGCT 4 cut(s) 232, 368, 440, 632
AluI AGCT 4 cut(s) 232, 368, 440, 632
Alw21I GWGCWC 1 cut(s) 634
Alw26I GTCTC 1 cut(s) 251
AlwNI CAGNNNCTG 1 cut(s) 698
AoxI GGCC 2 cut(s) 475, 919
ApeKI GCWGC 2 cut(s) 365, 368
ApoI RAATTY 1 cut(s) 713
Asp718I GGTACC 1 cut(s) 854
AspLEI GCGC 1 cut(s) 396
AspS9I GGNCC 2 cut(s) 476, 614
AsuHPI GGTGA 2 cut(s) 275, 677
AvaII GGWCC 1 cut(s) 614
AxyI CCTNAGG 1 cut(s) 167
BaeGI GKGCMC 1 cut(s) 561
BanI GGYRCC 1 cut(s) 854
BanII GRGCYC 1 cut(s) 634
BbsI GAAGAC 2 cut(s) 80, 343
Bbv12I GWGCWC 1 cut(s) 634
BbvI GCAGC 2 cut(s) 355, 377
BccI CCATC 5 cut(s) 169, 656, 803, 866, 872
BceAI ACGGC 2 cut(s) 93, 923
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BciT130I CCWGG 1 cut(s) 766
BciVI GTATCC 1 cut(s) 88
BclI TGATCA 1 cut(s) 307
BcoDI GTCTC 1 cut(s) 251
BcuI ACTAGT 1 cut(s) 346
BfaI CTAG 4 cut(s) 32, 38, 338, 347
BfrI CTTAAG 1 cut(s) 584
BfuI GTATCC 1 cut(s) 88
BisI GCNGC 2 cut(s) 366, 369
BlsI GCNGC 2 cut(s) 367, 370
Bme1390I CCNGG 1 cut(s) 766
Bme18I GGWCC 1 cut(s) 614
BmgT120I GGNCC 2 cut(s) 476, 614
BmiI GGNNCC 3 cut(s) 478, 779, 856
BmrFI CCNGG 1 cut(s) 766
BmrI ACTGGG 1 cut(s) 474
BmsI GCATC 1 cut(s) 37
BmuI ACTGGG 1 cut(s) 474
BpiI GAAGAC 2 cut(s) 80, 343
BplI GAGNNNNNCTC 2 cut(s) 478, 510
BpmI CTGGAG 1 cut(s) 787
Bpu10I CCTNAGC 1 cut(s) 633
BpuEI CTTGAG 1 cut(s) 784
BsaBI GATNNNNATC 2 cut(s) 508, 828
BsaHI GRCGYC 1 cut(s) 580
BsaJI CCNNGG 1 cut(s) 764
Bse1I ACTGG 1 cut(s) 480
Bse21I CCTNAGG 1 cut(s) 167
Bse3DI GCAATG 1 cut(s) 16
Bse8I GATNNNNATC 2 cut(s) 508, 828
BseBI CCWGG 1 cut(s) 766
BseDI CCNNGG 1 cut(s) 764
BseGI GGATG 2 cut(s) 10, 177
BseJI GATNNNNATC 2 cut(s) 508, 828
BseMI GCAATG 1 cut(s) 16
BseMII CTCAG 5 cut(s) 509, 609, 647, 669, 753
BseNI ACTGG 1 cut(s) 480
BseRI GAGGAG 1 cut(s) 721
BseSI GKGCMC 1 cut(s) 561
BseXI GCAGC 2 cut(s) 355, 377
BshFI GGCC 2 cut(s) 477, 921
BshNI GGYRCC 1 cut(s) 854
BsiHKAI GWGCWC 1 cut(s) 634
BsmAI GTCTC 1 cut(s) 251
BsmBI CGTCTC 1 cut(s) 251
BsnI GGCC 2 cut(s) 477, 921
Bsp1286I GDGCHC 2 cut(s) 561, 634
Bsp143I GATC 4 cut(s) 307, 461, 503, 840
BspACI CCGC 1 cut(s) 371
BspANI GGCC 2 cut(s) 477, 921
BspCNI CTCAG 5 cut(s) 508, 610, 646, 668, 752
BspLI GGNNCC 3 cut(s) 478, 779, 856
BspT107I GGYRCC 1 cut(s) 854
BspTI CTTAAG 1 cut(s) 584
BsrDI GCAATG 1 cut(s) 16
BsrI ACTGG 1 cut(s) 480
BssECI CCNNGG 1 cut(s) 764
BssMI GATC 4 cut(s) 307, 461, 503, 840
BssNI GRCGYC 1 cut(s) 580
Bst2UI CCWGG 1 cut(s) 766
Bst4CI ACNGT 4 cut(s) 545, 694, 811, 886
Bst6I CTCTTC 1 cut(s) 143
BstACI GRCGYC 1 cut(s) 580
BstAFI CTTAAG 1 cut(s) 584
BstC8I GCNNGC 1 cut(s) 649
BstDEI CTNAG 6 cut(s) 167, 495, 618, 633, 655, 739
BstF5I GGATG 2 cut(s) 10, 177
BstHHI GCGC 1 cut(s) 396
BstKTI GATC 4 cut(s) 310, 464, 506, 843
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 4 cut(s) 307, 461, 503, 840
BstNI CCWGG 1 cut(s) 766
BstNSI RCATGY 1 cut(s) 914
BstSCI CCNGG 1 cut(s) 764
BstSLI GKGCMC 1 cut(s) 561
BstV1I GCAGC 2 cut(s) 355, 377
BstV2I GAAGAC 2 cut(s) 80, 343
Bsu36I CCTNAGG 1 cut(s) 167
BsuI GTATCC 1 cut(s) 88
BsuRI GGCC 2 cut(s) 477, 921
BtsCI GGATG 2 cut(s) 10, 177
BtsIMutI CAGTG 2 cut(s) 487, 541
Cac8I GCNNGC 1 cut(s) 649
CaiI CAGNNNCTG 1 cut(s) 698
CfoI GCGC 1 cut(s) 396
Cfr13I GGNCC 2 cut(s) 476, 614
CseI GACGC 1 cut(s) 569
Csp6I GTAC 4 cut(s) 112, 855, 882, 905
CspCI CAANNNNNGTGG 2 cut(s) 45, 80
CviAII CATG 3 cut(s) 750, 817, 911
CviJI RGCY 9 cut(s) 41, 232, 368, 423, 440, 477, 632, 730, 921
CviKI_1 RGCY 9 cut(s) 41, 232, 368, 423, 440, 477, 632, 730, 921
CviQI GTAC 4 cut(s) 112, 855, 882, 905
DdeI CTNAG 6 cut(s) 167, 495, 618, 633, 655, 739
DpnI GATC 4 cut(s) 309, 463, 505, 842
DpnII GATC 4 cut(s) 307, 461, 503, 840
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
Ecl136II GAGCTC 1 cut(s) 632
Eco147I AGGCCT 1 cut(s) 921
Eco24I GRGCYC 1 cut(s) 634
Eco47I GGWCC 1 cut(s) 614
Eco53kI GAGCTC 1 cut(s) 632
Eco57I CTGAAG 2 cut(s) 720, 944
Eco81I CCTNAGG 1 cut(s) 167
EcoICRI GAGCTC 1 cut(s) 632
EcoO109I RGGNCCY 1 cut(s) 614
EcoRII CCWGG 1 cut(s) 764
EcoT38I GRGCYC 1 cut(s) 634
Esp3I CGTCTC 1 cut(s) 251
FaeI CATG 3 cut(s) 753, 820, 914
FatI CATG 3 cut(s) 749, 816, 910
FauNDI CATATG 1 cut(s) 756
FbaI TGATCA 1 cut(s) 307
FblI GTMKAC 2 cut(s) 182, 292
Fnu4HI GCNGC 2 cut(s) 366, 369
FokI GGATG 2 cut(s) 17, 184
FriOI GRGCYC 1 cut(s) 634
Fsp4HI GCNGC 2 cut(s) 366, 369
FspBI CTAG 4 cut(s) 32, 38, 338, 347
GlaI GCGC 1 cut(s) 395
GluI GCNGC 2 cut(s) 366, 369
GsuI CTGGAG 1 cut(s) 787
HaeIII GGCC 2 cut(s) 477, 921
HgaI GACGC 1 cut(s) 569
HhaI GCGC 1 cut(s) 396
Hin1I GRCGYC 1 cut(s) 580
Hin1II CATG 3 cut(s) 753, 820, 914
Hin6I GCGC 1 cut(s) 394
HinP1I GCGC 1 cut(s) 394
HincII GTYRAC 1 cut(s) 183
HindII GTYRAC 1 cut(s) 183
HindIII AAGCTT 1 cut(s) 438
HinfI GANTC 4 cut(s) 179, 487, 620, 737
HphI GGTGA 2 cut(s) 275, 677
Hpy166II GTNNAC 4 cut(s) 183, 266, 293, 889
Hpy188I TCNGA 2 cut(s) 498, 658
Hpy188III TCNNGA 9 cut(s) 145, 338, 377, 513, 617, 627, 741, 801, 899
Hpy8I GTNNAC 4 cut(s) 183, 266, 293, 889
HpyAV CCTTC 1 cut(s) 695
HpyCH4III ACNGT 4 cut(s) 545, 694, 811, 886
HpyCH4IV ACGT 2 cut(s) 268, 472
HpyCH4V TGCA 2 cut(s) 28, 365
HpyF3I CTNAG 6 cut(s) 167, 495, 618, 633, 655, 739
HpySE526I ACGT 2 cut(s) 268, 472
Hsp92I GRCGYC 1 cut(s) 580
Hsp92II CATG 3 cut(s) 753, 820, 914
HspAI GCGC 1 cut(s) 394
KpnI GGTACC 1 cut(s) 858
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 4 cut(s) 307, 461, 503, 840
LmnI GCTCC 1 cut(s) 743
Lsp1109I GCAGC 2 cut(s) 355, 377
LweI GCATC 1 cut(s) 37
MaeI CTAG 4 cut(s) 32, 38, 338, 347
MaeII ACGT 2 cut(s) 268, 472
MaeIII GTNAC 1 cut(s) 694
MalI GATC 4 cut(s) 309, 463, 505, 842
MboI GATC 4 cut(s) 307, 461, 503, 840
MhlI GDGCHC 2 cut(s) 561, 634
MluCI AATT 4 cut(s) 107, 276, 298, 713
MlyI GAGTC 4 cut(s) 188, 496, 629, 731
MnlI CCTC 8 cut(s) 109, 413, 449, 664, 676, 699, 797, 895
MseI TTAA 2 cut(s) 326, 585
MslI CAYNNNNRTG 3 cut(s) 543, 786, 863
MspA1I CMGCKG 1 cut(s) 368
MspCI CTTAAG 1 cut(s) 584
MspR9I CCNGG 1 cut(s) 766
MvaI CCWGG 1 cut(s) 766
NdeI CATATG 1 cut(s) 756
NdeII GATC 4 cut(s) 307, 461, 503, 840
NlaIII CATG 3 cut(s) 753, 820, 914
NlaIV GGNNCC 3 cut(s) 478, 779, 856
NspI RCATGY 1 cut(s) 914
PceI AGGCCT 1 cut(s) 921
PkrI GCNGC 2 cut(s) 367, 370
PleI GAGTC 4 cut(s) 187, 495, 628, 731
PpsI GAGTC 4 cut(s) 187, 495, 628, 731
PpuMI RGGWCCY 1 cut(s) 614
Psp124BI GAGCTC 1 cut(s) 634
Psp5II RGGWCCY 1 cut(s) 614
Psp6I CCWGG 1 cut(s) 764
PspGI CCWGG 1 cut(s) 764
PspN4I GGNNCC 3 cut(s) 478, 779, 856
PspPI GGNCC 2 cut(s) 476, 614
PspPPI RGGWCCY 1 cut(s) 614
PstNI CAGNNNCTG 1 cut(s) 698
PvuII CAGCTG 1 cut(s) 368
RsaI GTAC 4 cut(s) 113, 856, 883, 906
RsaNI GTAC 4 cut(s) 112, 855, 882, 905
RseI CAYNNNNRTG 3 cut(s) 543, 786, 863
SacI GAGCTC 1 cut(s) 634
SalI GTCGAC 1 cut(s) 181
SaqAI TTAA 2 cut(s) 326, 585
SatI GCNGC 2 cut(s) 366, 369
Sau3AI GATC 4 cut(s) 307, 461, 503, 840
Sau96I GGNCC 2 cut(s) 476, 614
SchI GAGTC 4 cut(s) 188, 496, 629, 731
ScrFI CCNGG 1 cut(s) 766
SduI GDGCHC 2 cut(s) 561, 634
SfaNI GCATC 1 cut(s) 37
SinI GGWCC 1 cut(s) 614
SmiMI CAYNNNNRTG 3 cut(s) 543, 786, 863
SmlI CTYRAG 2 cut(s) 584, 799
SmoI CTYRAG 2 cut(s) 584, 799
SpeI ACTAGT 1 cut(s) 346
Sse9I AATT 4 cut(s) 107, 276, 298, 713
SseBI AGGCCT 1 cut(s) 921
SsiI CCGC 1 cut(s) 371
SspMI CTAG 4 cut(s) 32, 38, 338, 347
SstI GAGCTC 1 cut(s) 634
StuI AGGCCT 1 cut(s) 921
StyD4I CCNGG 1 cut(s) 764
TaaI ACNGT 4 cut(s) 545, 694, 811, 886
TaiI ACGT 2 cut(s) 271, 475
TaqI TCGA 2 cut(s) 182, 354
TaqII GACCGA 1 cut(s) 209
TasI AATT 4 cut(s) 107, 276, 298, 713
Tru1I TTAA 2 cut(s) 326, 585
Tru9I TTAA 2 cut(s) 326, 585
TscAI CASTG 2 cut(s) 487, 548
TseI GCWGC 2 cut(s) 365, 368
TspDTI ATGAA 4 cut(s) 60, 609, 804, 805
TspGWI ACGGA 1 cut(s) 482
TspRI CASTG 2 cut(s) 487, 548
Vha464I CTTAAG 1 cut(s) 584
VpaK11BI GGWCC 1 cut(s) 614
XapI RAATTY 1 cut(s) 713
XbaI TCTAGA 1 cut(s) 337
XceI RCATGY 1 cut(s) 914
XmiI GTMKAC 2 cut(s) 182, 292
XspI CTAG 4 cut(s) 32, 38, 338, 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.