Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000278

Physical Location & Seq

Genomic Coordinates Forward (+)

31791570 .. 31791878

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1220000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGACGATCGAGGACGAGCTACAAGCGCTCTTGTTACTTGGATCCTTGCCAGACAGTTGGGAGACCTTTGTGAAACAAGGAGAAAGACTTCTGGCACAGATAGCAGCCAAGTATTTGTCACAGAGAACCGCGGAAGAAGCAAGAGTAGAGGGCCTAGAGGTCATGGCAGGAGTCCTAGCCGATCCAAGTCAAGGTTCAGGGGTGCATGCCACCATTGTGGCAAAGAAGGCCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OSR1_C Pkinase

Protein Analysis

79

Amino Acids

8.36

Weight (kDa)

4.78

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29785
fragaria_vesca	FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica	MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica	Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis	pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis	RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii	Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa	Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha	Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana	Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	131
AciI	CCGC	2 cut(s)	129, 131
AclWI	GGATC	3 cut(s)	36, 49, 176
AfeI	AGCGCT	1 cut(s)	27
AfiI	CCNNNNNNNGG	1 cut(s)	191
AjuI	GAANNNNNNNTTGG	2 cut(s)	178, 210
AleI	CACNNNNGTG	1 cut(s)	215
AluBI	AGCT	1 cut(s)	19
AluI	AGCT	1 cut(s)	19
Alw26I	GTCTC	1 cut(s)	56
AlwI	GGATC	3 cut(s)	36, 49, 176
Aor51HI	AGCGCT	1 cut(s)	27
AoxI	GGCC	2 cut(s)	151, 228
ApeKI	GCWGC	1 cut(s)	104
Asp700I	GAANNNNTTC	1 cut(s)	87
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	1 cut(s)	151
BamHI	GGATCC	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	116
BcoDI	GTCTC	1 cut(s)	56
BfaI	CTAG	2 cut(s)	155, 176
BfoI	RGCGCY	1 cut(s)	29
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	151
BmiI	GGNNCC	1 cut(s)	43
BsaI	GGTCTC	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseXI	GCAGC	1 cut(s)	116
Bsh1236I	CGCG	1 cut(s)	131
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	153, 230
BsiEI	CGRYCG	1 cut(s)	9
BslI	CCNNNNNNNGG	1 cut(s)	191
BsmAI	GTCTC	1 cut(s)	56
BsnI	GGCC	2 cut(s)	153, 230
Bso31I	GGTCTC	1 cut(s)	56
Bsp143I	GATC	3 cut(s)	6, 41, 181
BspACI	CCGC	2 cut(s)	129, 131
BspANI	GGCC	2 cut(s)	153, 230
BspFNI	CGCG	1 cut(s)	131
BspLI	GGNNCC	1 cut(s)	43
BspPI	GGATC	3 cut(s)	36, 49, 176
BspTNI	GGTCTC	1 cut(s)	56
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	3 cut(s)	6, 41, 181
Bst4CI	ACNGT	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	207
BstDSI	CCRYGG	1 cut(s)	129
BstFNI	CGCG	1 cut(s)	131
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	3 cut(s)	9, 44, 184
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	3 cut(s)	6, 41, 181
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 101, 137, 227
BstNSI	RCATGY	1 cut(s)	209
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	1 cut(s)	116
BstX2I	RGATCY	1 cut(s)	41
BstXI	CCANNNNNNTGG	2 cut(s)	57, 217
BstYI	RGATCY	1 cut(s)	41
BsuRI	GGCC	2 cut(s)	153, 230
BtgI	CCRYGG	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	207
CfoI	GCGC	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	151
Cfr42I	CCGCGG	1 cut(s)	132
CviAII	CATG	2 cut(s)	163, 206
CviJI	RGCY	5 cut(s)	19, 107, 153, 179, 230
CviKI_1	RGCY	5 cut(s)	19, 107, 153, 179, 230
DpnI	GATC	3 cut(s)	8, 43, 183
DpnII	GATC	3 cut(s)	6, 41, 181
Eco31I	GGTCTC	1 cut(s)	56
Eco47III	AGCGCT	1 cut(s)	27
EcoO109I	RGGNCCY	1 cut(s)	151
FaeI	CATG	2 cut(s)	166, 209
FaiI	YATR	4 cut(s)	164, 207, 233, 235
FatI	CATG	2 cut(s)	162, 205
FauNDI	CATATG	1 cut(s)	233
Fnu4HI	GCNGC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	105
FspBI	CTAG	2 cut(s)	155, 176
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	1 cut(s)	105
HaeII	RGCGCY	1 cut(s)	29
HaeIII	GGCC	2 cut(s)	153, 230
HhaI	GCGC	1 cut(s)	28
Hin1II	CATG	2 cut(s)	166, 209
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HinfI	GANTC	1 cut(s)	171
HpyAV	CCTTC	1 cut(s)	220
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4V	TGCA	1 cut(s)	205
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 101, 137, 227
Hsp92II	CATG	2 cut(s)	166, 209
HspAI	GCGC	1 cut(s)	26
KspI	CCGCGG	1 cut(s)	132
Kzo9I	GATC	3 cut(s)	6, 41, 181
LpnPI	CCDG	4 cut(s)	63, 77, 153, 183
Lsp1109I	GCAGC	1 cut(s)	116
MaeI	CTAG	2 cut(s)	155, 176
MaeIII	GTNAC	2 cut(s)	33, 117
MalI	GATC	3 cut(s)	8, 43, 183
MboI	GATC	3 cut(s)	6, 41, 181
MboII	GAAGA	1 cut(s)	146
MflI	RGATCY	1 cut(s)	41
MlyI	GAGTC	1 cut(s)	180
MnlI	CCTC	3 cut(s)	4, 142, 151
MroXI	GAANNNNTTC	1 cut(s)	87
MslI	CAYNNNNRTG	1 cut(s)	215
MspA1I	CMGCKG	1 cut(s)	131
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	4 cut(s)	25, 101, 137, 227
NdeI	CATATG	1 cut(s)	233
NdeII	GATC	3 cut(s)	6, 41, 181
NlaIII	CATG	2 cut(s)	166, 209
NlaIV	GGNNCC	1 cut(s)	43
NmuCI	GTSAC	1 cut(s)	117
NspI	RCATGY	1 cut(s)	209
OliI	CACNNNNGTG	1 cut(s)	215
PaeI	GCATGC	1 cut(s)	209
PdmI	GAANNNNTTC	1 cut(s)	87
PkrI	GCNGC	1 cut(s)	106
Ple19I	CGATCG	1 cut(s)	9
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	41
PvuI	CGATCG	1 cut(s)	9
RseI	CAYNNNNRTG	1 cut(s)	215
SacII	CCGCGG	1 cut(s)	132
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	3 cut(s)	6, 41, 181
Sau96I	GGNCC	1 cut(s)	151
SchI	GAGTC	1 cut(s)	180
SetI	ASST	4 cut(s)	21, 68, 162, 196
Sfr303I	CCGCGG	1 cut(s)	132
SgrBI	CCGCGG	1 cut(s)	132
SmiMI	CAYNNNNRTG	1 cut(s)	215
SphI	GCATGC	1 cut(s)	209
SsiI	CCGC	2 cut(s)	129, 131
SspMI	CTAG	2 cut(s)	155, 176
TaaI	ACNGT	1 cut(s)	56
TaqI	TCGA	1 cut(s)	9
TseFI	GTSAC	1 cut(s)	117
TseI	GCWGC	1 cut(s)	104
Tsp45I	GTSAC	1 cut(s)	117
XceI	RCATGY	1 cut(s)	209
XmnI	GAANNNNTTC	1 cut(s)	87
XspI	CTAG	2 cut(s)	155, 176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.