disease resistance protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 128 - 288 | 1.3e-27 | gag-polypeptide of LTR copia-type |
| Pol_BBD | PF22936 | 385 - 465 | 8.9e-31 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 492 - 562 | 1.4e-17 | GAG-pre-integrase domain |
| rve | PF00665 | 582 - 648 | 8.7e-06 | Integrase core domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1634 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 91 |
| AccI | GTMKAC | 1 cut(s) | 1789 |
| AccII | CGCG | 1 cut(s) | 410 |
| AciI | CCGC | 4 cut(s) | 135, 408, 523, 619 |
| AcoI | YGGCCR | 1 cut(s) | 1468 |
| AcsI | RAATTY | 5 cut(s) | 460, 694, 742, 806, 1345 |
| AcuI | CTGAAG | 3 cut(s) | 900, 1092, 1378 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 91, 1466 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 255, 287 |
| AleI | CACNNNNGTG | 1 cut(s) | 1857 |
| AluBI | AGCT | 8 cut(s) | 97, 282, 884, 1076, 1212, 1457, 1598, 1963 |
| AluI | AGCT | 8 cut(s) | 97, 282, 884, 1076, 1212, 1457, 1598, 1963 |
| Alw21I | GWGCWC | 2 cut(s) | 1441, 1965 |
| Alw26I | GTCTC | 5 cut(s) | 64, 165, 521, 951, 1525 |
| Alw44I | GTGCAC | 1 cut(s) | 1437 |
| AoxI | GGCC | 4 cut(s) | 726, 1018, 1468, 1579 |
| ApaLI | GTGCAC | 1 cut(s) | 1437 |
| ApeKI | GCWGC | 1 cut(s) | 279 |
| ApoI | RAATTY | 5 cut(s) | 460, 694, 742, 806, 1345 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1762, 1794 |
| AspS9I | GGNCC | 2 cut(s) | 1018, 1760 |
| AsuC2I | CCSGG | 1 cut(s) | 286 |
| AsuHPI | GGTGA | 2 cut(s) | 1517, 1970 |
| AsuII | TTCGAA | 1 cut(s) | 321 |
| AvaII | GGWCC | 1 cut(s) | 1760 |
| BaeGI | GKGCMC | 2 cut(s) | 1441, 1538 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1695, 1728 |
| BalI | TGGCCA | 1 cut(s) | 1470 |
| BanI | GGYRCC | 1 cut(s) | 1634 |
| BanII | GRGCYC | 1 cut(s) | 1965 |
| BbsI | GAAGAC | 2 cut(s) | 567, 1055 |
| Bbv12I | GWGCWC | 2 cut(s) | 1441, 1965 |
| BbvI | GCAGC | 1 cut(s) | 291 |
| BccI | CCATC | 4 cut(s) | 332, 1220, 1298, 1403 |
| BciVI | GTATCC | 1 cut(s) | 1156 |
| BcnI | CCSGG | 1 cut(s) | 286 |
| BcoDI | GTCTC | 5 cut(s) | 64, 165, 521, 951, 1525 |
| BfaI | CTAG | 5 cut(s) | 927, 954, 1461, 1557, 1689 |
| BfmI | CTRYAG | 1 cut(s) | 1515 |
| BfuI | GTATCC | 1 cut(s) | 1156 |
| BglII | AGATCT | 1 cut(s) | 397 |
| BisI | GCNGC | 2 cut(s) | 280, 408 |
| BlsI | GCNGC | 2 cut(s) | 281, 409 |
| Bme1390I | CCNGG | 1 cut(s) | 286 |
| Bme18I | GGWCC | 1 cut(s) | 1760 |
| BmgT120I | GGNCC | 2 cut(s) | 1018, 1760 |
| BmiI | GGNNCC | 3 cut(s) | 1636, 1761, 2010 |
| BmrFI | CCNGG | 1 cut(s) | 286 |
| BmrI | ACTGGG | 1 cut(s) | 1920 |
| BmsI | GCATC | 3 cut(s) | 510, 652, 1520 |
| BmuI | ACTGGG | 1 cut(s) | 1920 |
| BpiI | GAAGAC | 2 cut(s) | 567, 1055 |
| BpmI | CTGGAG | 1 cut(s) | 1971 |
| Bpu14I | TTCGAA | 1 cut(s) | 321 |
| BpuEI | CTTGAG | 2 cut(s) | 119, 1900 |
| BpuMI | CCSGG | 1 cut(s) | 286 |
| BsaBI | GATNNNNATC | 3 cut(s) | 264, 861, 1254 |
| BsaI | GGTCTC | 1 cut(s) | 165 |
| BsaJI | CCNNGG | 2 cut(s) | 1386, 1975 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 902, 932, 1756, 1786 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 91, 1466 |
| Bse118I | RCCGGY | 1 cut(s) | 1586 |
| Bse1I | ACTGG | 3 cut(s) | 15, 1915, 1988 |
| Bse3DI | GCAATG | 1 cut(s) | 371 |
| Bse8I | GATNNNNATC | 3 cut(s) | 264, 861, 1254 |
| BseDI | CCNNGG | 2 cut(s) | 1386, 1975 |
| BseGI | GGATG | 5 cut(s) | 187, 363, 721, 997, 1756 |
| BseJI | GATNNNNATC | 3 cut(s) | 264, 861, 1254 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 91, 1466 |
| BseMI | GCAATG | 1 cut(s) | 371 |
| BseMII | CTCAG | 2 cut(s) | 54, 518 |
| BseNI | ACTGG | 3 cut(s) | 15, 1915, 1988 |
| BseRI | GAGGAG | 2 cut(s) | 928, 1179 |
| BseSI | GKGCMC | 2 cut(s) | 1441, 1538 |
| BseXI | GCAGC | 1 cut(s) | 291 |
| BsgI | GTGCAG | 1 cut(s) | 603 |
| Bsh1236I | CGCG | 1 cut(s) | 410 |
| BshFI | GGCC | 4 cut(s) | 728, 1020, 1470, 1581 |
| BshNI | GGYRCC | 1 cut(s) | 1634 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1441, 1965 |
| BsiSI | CCGG | 5 cut(s) | 285, 425, 443, 752, 1587 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 91, 1466 |
| BsmAI | GTCTC | 5 cut(s) | 64, 165, 521, 951, 1525 |
| BsmI | GAATGC | 2 cut(s) | 1728, 1744 |
| BsnI | GGCC | 4 cut(s) | 728, 1020, 1470, 1581 |
| Bso31I | GGTCTC | 1 cut(s) | 165 |
| Bsp119I | TTCGAA | 1 cut(s) | 321 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1441, 1538, 1965 |
| Bsp1407I | TGTACA | 2 cut(s) | 51, 1711 |
| Bsp143I | GATC | 3 cut(s) | 397, 902, 1934 |
| BspACI | CCGC | 4 cut(s) | 135, 408, 523, 619 |
| BspANI | GGCC | 4 cut(s) | 728, 1020, 1470, 1581 |
| BspCNI | CTCAG | 2 cut(s) | 55, 517 |
| BspFNI | CGCG | 1 cut(s) | 410 |
| BspHI | TCATGA | 1 cut(s) | 865 |
| BspLI | GGNNCC | 3 cut(s) | 1636, 1761, 2010 |
| BspQI | GCTCTTC | 1 cut(s) | 481 |
| BspT104I | TTCGAA | 1 cut(s) | 321 |
| BspT107I | GGYRCC | 1 cut(s) | 1634 |
| BspTNI | GGTCTC | 1 cut(s) | 165 |
| BsrDI | GCAATG | 1 cut(s) | 371 |
| BsrFI | RCCGGY | 1 cut(s) | 1586 |
| BsrGI | TGTACA | 2 cut(s) | 51, 1711 |
| BsrI | ACTGG | 3 cut(s) | 15, 1915, 1988 |
| BssAI | RCCGGY | 1 cut(s) | 1586 |
| BssECI | CCNNGG | 2 cut(s) | 1386, 1975 |
| BssMI | GATC | 3 cut(s) | 397, 902, 1934 |
| BssT1I | CCWWGG | 1 cut(s) | 1386 |
| Bst4CI | ACNGT | 6 cut(s) | 304, 802, 945, 1285, 1498, 2002 |
| Bst6I | CTCTTC | 3 cut(s) | 216, 481, 572 |
| BstAUI | TGTACA | 2 cut(s) | 51, 1711 |
| BstBI | TTCGAA | 1 cut(s) | 321 |
| BstC8I | GCNNGC | 2 cut(s) | 472, 1664 |
| BstDEI | CTNAG | 4 cut(s) | 63, 504, 1041, 1149 |
| BstF5I | GGATG | 5 cut(s) | 187, 363, 721, 997, 1756 |
| BstFNI | CGCG | 1 cut(s) | 410 |
| BstKTI | GATC | 3 cut(s) | 400, 905, 1937 |
| BstMAI | GTCTC | 5 cut(s) | 64, 165, 521, 951, 1525 |
| BstMBI | GATC | 3 cut(s) | 397, 902, 1934 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1082, 1969 |
| BstSCI | CCNGG | 1 cut(s) | 284 |
| BstSFI | CTRYAG | 1 cut(s) | 1515 |
| BstSLI | GKGCMC | 2 cut(s) | 1441, 1538 |
| BstUI | CGCG | 1 cut(s) | 410 |
| BstV1I | GCAGC | 1 cut(s) | 291 |
| BstV2I | GAAGAC | 2 cut(s) | 567, 1055 |
| BstX2I | RGATCY | 1 cut(s) | 397 |
| BstYI | RGATCY | 1 cut(s) | 397 |
| BsuI | GTATCC | 1 cut(s) | 1156 |
| BsuRI | GGCC | 4 cut(s) | 728, 1020, 1470, 1581 |
| BtsCI | GGATG | 5 cut(s) | 187, 363, 721, 997, 1756 |
| BtsIMutI | CAGTG | 2 cut(s) | 1494, 1994 |
| Cac8I | GCNNGC | 2 cut(s) | 472, 1664 |
| CciI | TCATGA | 1 cut(s) | 865 |
| Cfr10I | RCCGGY | 1 cut(s) | 1586 |
| Cfr13I | GGNCC | 2 cut(s) | 1018, 1760 |
| CviAII | CATG | 7 cut(s) | 176, 788, 866, 1243, 1301, 1309, 1583 |
| DdeI | CTNAG | 4 cut(s) | 63, 504, 1041, 1149 |
| DpnI | GATC | 3 cut(s) | 399, 904, 1936 |
| DpnII | GATC | 3 cut(s) | 397, 902, 1934 |
| DraI | TTTAAA | 1 cut(s) | 1629 |
| EaeI | YGGCCR | 1 cut(s) | 1468 |
| Eam1104I | CTCTTC | 3 cut(s) | 216, 481, 572 |
| EarI | CTCTTC | 3 cut(s) | 216, 481, 572 |
| Ecl136II | GAGCTC | 1 cut(s) | 1963 |
| Eco130I | CCWWGG | 1 cut(s) | 1386 |
| Eco147I | AGGCCT | 1 cut(s) | 728 |
| Eco24I | GRGCYC | 1 cut(s) | 1965 |
| Eco31I | GGTCTC | 1 cut(s) | 165 |
| Eco47I | GGWCC | 1 cut(s) | 1760 |
| Eco53kI | GAGCTC | 1 cut(s) | 1963 |
| Eco57I | CTGAAG | 3 cut(s) | 900, 1092, 1378 |
| EcoICRI | GAGCTC | 1 cut(s) | 1963 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1760 |
| EcoRI | GAATTC | 1 cut(s) | 742 |
| EcoT14I | CCWWGG | 1 cut(s) | 1386 |
| EcoT22I | ATGCAT | 1 cut(s) | 789 |
| EcoT38I | GRGCYC | 1 cut(s) | 1965 |
| ErhI | CCWWGG | 1 cut(s) | 1386 |
| FaeI | CATG | 7 cut(s) | 179, 791, 869, 1246, 1304, 1312, 1586 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 183, 215, 387, 419, 1816, 1848 |
| FatI | CATG | 7 cut(s) | 175, 787, 865, 1242, 1300, 1308, 1582 |
| FauI | CCCGC | 1 cut(s) | 516 |
| FauNDI | CATATG | 2 cut(s) | 1182, 1569 |
| FblI | GTMKAC | 1 cut(s) | 1789 |
| Fnu4HI | GCNGC | 2 cut(s) | 280, 408 |
| FokI | GGATG | 5 cut(s) | 194, 370, 728, 1004, 1763 |
| FriOI | GRGCYC | 1 cut(s) | 1965 |
| Fsp4HI | GCNGC | 2 cut(s) | 280, 408 |
| FspBI | CTAG | 5 cut(s) | 927, 954, 1461, 1557, 1689 |
| GluI | GCNGC | 2 cut(s) | 280, 408 |
| GsuI | CTGGAG | 1 cut(s) | 1971 |
| HaeIII | GGCC | 4 cut(s) | 728, 1020, 1470, 1581 |
| HapII | CCGG | 5 cut(s) | 285, 425, 443, 752, 1587 |
| Hin1II | CATG | 7 cut(s) | 179, 791, 869, 1246, 1304, 1312, 1586 |
| HincII | GTYRAC | 1 cut(s) | 1323 |
| HindII | GTYRAC | 1 cut(s) | 1323 |
| HindIII | AAGCTT | 2 cut(s) | 882, 1210 |
| HinfI | GANTC | 6 cut(s) | 206, 755, 1186, 1382, 1544, 1771 |
| HpaII | CCGG | 5 cut(s) | 285, 425, 443, 752, 1587 |
| HphI | GGTGA | 2 cut(s) | 1517, 1970 |
| Hpy166II | GTNNAC | 5 cut(s) | 1323, 1439, 1649, 1790, 1840 |
| Hpy188III | TCNNGA | 7 cut(s) | 355, 866, 948, 1733, 1801, 1824, 1879 |
| Hpy8I | GTNNAC | 5 cut(s) | 1323, 1439, 1649, 1790, 1840 |
| Hpy99I | CGWCG | 1 cut(s) | 304 |
| HpyAV | CCTTC | 3 cut(s) | 629, 1717, 1821 |
| HpyCH4III | ACNGT | 6 cut(s) | 304, 802, 945, 1285, 1498, 2002 |
| HpyCH4IV | ACGT | 1 cut(s) | 1981 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1082, 1969 |
| HpyF3I | CTNAG | 4 cut(s) | 63, 504, 1041, 1149 |
| HpySE526I | ACGT | 1 cut(s) | 1981 |
| Hsp92II | CATG | 7 cut(s) | 179, 791, 869, 1246, 1304, 1312, 1586 |
| Kzo9I | GATC | 3 cut(s) | 397, 902, 1934 |
| LguI | GCTCTTC | 1 cut(s) | 481 |
| LmnI | GCTCC | 5 cut(s) | 94, 287, 1462, 1968, 1977 |
| Lsp1109I | GCAGC | 1 cut(s) | 291 |
| LweI | GCATC | 3 cut(s) | 510, 652, 1520 |
| MaeI | CTAG | 5 cut(s) | 927, 954, 1461, 1557, 1689 |
| MaeII | ACGT | 1 cut(s) | 1981 |
| MaeIII | GTNAC | 7 cut(s) | 28, 148, 772, 1426, 1498, 1801, 1990 |
| MalI | GATC | 3 cut(s) | 399, 904, 1936 |
| MboI | GATC | 3 cut(s) | 397, 902, 1934 |
| MflI | RGATCY | 1 cut(s) | 397 |
| MhlI | GDGCHC | 3 cut(s) | 1441, 1538, 1965 |
| MlsI | TGGCCA | 1 cut(s) | 1470 |
| MluNI | TGGCCA | 1 cut(s) | 1470 |
| MlyI | GAGTC | 3 cut(s) | 749, 1180, 1765 |
| MmeI | TCCRAC | 4 cut(s) | 109, 148, 1140, 1865 |
| Mox20I | TGGCCA | 1 cut(s) | 1470 |
| Mph1103I | ATGCAT | 1 cut(s) | 789 |
| MscI | TGGCCA | 1 cut(s) | 1470 |
| MslI | CAYNNNNRTG | 7 cut(s) | 180, 660, 782, 1407, 1587, 1749, 1857 |
| Msp20I | TGGCCA | 1 cut(s) | 1470 |
| MspA1I | CMGCKG | 1 cut(s) | 137 |
| MspI | CCGG | 5 cut(s) | 285, 425, 443, 752, 1587 |
| MspR9I | CCNGG | 1 cut(s) | 286 |
| Mva1269I | GAATGC | 2 cut(s) | 1728, 1744 |
| MvnI | CGCG | 1 cut(s) | 410 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1082, 1969 |
| NciI | CCSGG | 1 cut(s) | 286 |
| NdeI | CATATG | 2 cut(s) | 1182, 1569 |
| NdeII | GATC | 3 cut(s) | 397, 902, 1934 |
| NlaIII | CATG | 7 cut(s) | 179, 791, 869, 1246, 1304, 1312, 1586 |
| NlaIV | GGNNCC | 3 cut(s) | 1636, 1761, 2010 |
| NmuCI | GTSAC | 4 cut(s) | 28, 148, 1498, 1801 |
| NsiI | ATGCAT | 1 cut(s) | 789 |
| NspV | TTCGAA | 1 cut(s) | 321 |
| OliI | CACNNNNGTG | 1 cut(s) | 1857 |
| PagI | TCATGA | 1 cut(s) | 865 |
| PceI | AGGCCT | 1 cut(s) | 728 |
| PciSI | GCTCTTC | 1 cut(s) | 481 |
| PctI | GAATGC | 2 cut(s) | 1728, 1744 |
| PfeI | GAWTC | 3 cut(s) | 206, 1382, 1544 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 91 |
| PkrI | GCNGC | 2 cut(s) | 281, 409 |
| PleI | GAGTC | 3 cut(s) | 749, 1180, 1765 |
| PpsI | GAGTC | 3 cut(s) | 749, 1180, 1765 |
| PpuMI | RGGWCCY | 1 cut(s) | 1760 |
| Psp124BI | GAGCTC | 1 cut(s) | 1965 |
| Psp5II | RGGWCCY | 1 cut(s) | 1760 |
| PspN4I | GGNNCC | 3 cut(s) | 1636, 1761, 2010 |
| PspPI | GGNCC | 2 cut(s) | 1018, 1760 |
| PspPPI | RGGWCCY | 1 cut(s) | 1760 |
| PsuI | RGATCY | 1 cut(s) | 397 |
| RseI | CAYNNNNRTG | 7 cut(s) | 180, 660, 782, 1407, 1587, 1749, 1857 |
| SacI | GAGCTC | 1 cut(s) | 1965 |
| SapI | GCTCTTC | 1 cut(s) | 481 |
| SatI | GCNGC | 2 cut(s) | 280, 408 |
| Sau3AI | GATC | 3 cut(s) | 397, 902, 1934 |
| Sau96I | GGNCC | 2 cut(s) | 1018, 1760 |
| SchI | GAGTC | 3 cut(s) | 749, 1180, 1765 |
| ScrFI | CCNGG | 1 cut(s) | 286 |
| SduI | GDGCHC | 3 cut(s) | 1441, 1538, 1965 |
| SfaNI | GCATC | 3 cut(s) | 510, 652, 1520 |
| SfcI | CTRYAG | 1 cut(s) | 1515 |
| SfuI | TTCGAA | 1 cut(s) | 321 |
| SinI | GGWCC | 1 cut(s) | 1760 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 180, 660, 782, 1407, 1587, 1749, 1857 |
| SmlI | CTYRAG | 2 cut(s) | 98, 1879 |
| SmoI | CTYRAG | 2 cut(s) | 98, 1879 |
| SseBI | AGGCCT | 1 cut(s) | 728 |
| SsiI | CCGC | 4 cut(s) | 135, 408, 523, 619 |
| SspI | AATATT | 1 cut(s) | 735 |
| SspMI | CTAG | 5 cut(s) | 927, 954, 1461, 1557, 1689 |
| SstI | GAGCTC | 1 cut(s) | 1965 |
| StuI | AGGCCT | 1 cut(s) | 728 |
| StyD4I | CCNGG | 1 cut(s) | 284 |
| StyI | CCWWGG | 1 cut(s) | 1386 |
| TaaI | ACNGT | 6 cut(s) | 304, 802, 945, 1285, 1498, 2002 |
| TaiI | ACGT | 1 cut(s) | 1984 |
| TaqI | TCGA | 3 cut(s) | 321, 437, 949 |
| TatI | WGTACW | 3 cut(s) | 51, 1172, 1711 |
| TauI | GCSGC | 1 cut(s) | 410 |
| TfiI | GAWTC | 3 cut(s) | 206, 1382, 1544 |
| TscAI | CASTG | 2 cut(s) | 1501, 2001 |
| TseFI | GTSAC | 4 cut(s) | 28, 148, 1498, 1801 |
| TseI | GCWGC | 1 cut(s) | 279 |
| Tsp45I | GTSAC | 4 cut(s) | 28, 148, 1498, 1801 |
| TspRI | CASTG | 2 cut(s) | 1501, 2001 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 91 |
| VneI | GTGCAC | 1 cut(s) | 1437 |
| VpaK11BI | GGWCC | 1 cut(s) | 1760 |
| XapI | RAATTY | 5 cut(s) | 460, 694, 742, 806, 1345 |
| XmiI | GTMKAC | 1 cut(s) | 1789 |
| XspI | CTAG | 5 cut(s) | 927, 954, 1461, 1557, 1689 |
| Zsp2I | ATGCAT | 1 cut(s) | 789 |