MD04G1193900.v1.1

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000278
Physical Location & Seq
Reverse (-)
28346742 .. 28349769
3028 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1193900.v1.1.491

Sequence Viewer

Length: 1119 bp
ATGATTATGTTTCTTCCTTGTTTTGGGGAAAAGAAAAGTGCACTTTGTCTAAAGTTTTTTCTTTGGTCCATGTGGGAAGTCACGGGTGCAGAGAACAGGCTACACTTGAAGAAAAAGCTCTACCGTTTTCAATACAAAGAAGGTACAAAAATGATTAGACACCTTGATGCTTTTAATAAGTTGATTGCCGACTTGTTAAATTTAGATGAGGATATTAAGGATGAAGATAAGGCCTTAATATTGTTGAATTCCTTGCCGGACTCTTATGAGCATTTTGTTACCACTATTATGCATGGTAAAGAAACTGTGAAATTTGAAGATGTGTCAAATGCCTTGATGAATTATGAAATGAGGCATAGAGATAAAAATCATGATAGTAACTCTGAAGCTTTATTTGTTAGAGGTAGATCATCGGAGAGAAGATCATCTTCTAGTAAGAAAAAATCACAGTCTCGACCTAGAGGAAACTCTAAAGGTAGAAAACCTTTGGAAATGGATGAATGTGCCTTTTGTCGTAATAAGGGCCATTGGAAGAAAGATTGTCCTAAATTGAAGATCAAAGGCAAAGAAAGTTCTGAAGCTAATGTTGCTGAAGTTGAAACAGATTTTTCTGATTTTGCTTTAACCACTTCTTCATCATTTGATTGTGCCACTAAGTGGGTGTTGGATACGGGTTGTACTCATCATATGACTCCTCACAAGGATTGGTTTTCAAGCTTGAAAGAGTTTGATGGTGGCGTTGTGTTCATGGGAGATGACAATCGTTGCACAACAAAAGGGATTGGTACAGTTCGTTTGAAGTTGCATGATGGTATGGTTAAAGAGTTGACATGTGTTCGGTATGTACCGAATTTGAAGAAAAATCTTATTTCTTTGGGCACTTTAGAATCCAAGGGTTTCAGGTTTCATTCAGATGAGCAGACATTGAAAGTTACTTATGGTGCACTTGTTGTGATGAAAGCTCCTCGATGTGGCCATTTGTATTTATTGCAGGGAAGCACTGTGACAGCTTGCCAACACTTTGTAAACTCCCATTTGGTTGATAGTGGATTATTGGGTGAGCTCCTACTGCTCCGAGGACATACTCCAGTTACACTGACTGTTGAGGAACCTCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

373

Amino Acids

42.39

Weight (kDa)

8.89

Isoelectric Point (pI)

29.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 23 - 123 3.9e-21 gag-polypeptide of LTR copia-type
Pol_BBD PF22936 220 - 300 4.3e-31 Pol polyprotein, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 657
AcoI YGGCCR 1 cut(s) 973
AcsI RAATTY 4 cut(s) 199, 247, 311, 850
AcuI CTGAAG 3 cut(s) 405, 597, 612
AdeI CACNNNGTG 1 cut(s) 657
AfaI GTAC 4 cut(s) 145, 679, 787, 846
AfiI CCNNNNNNNGG 3 cut(s) 23, 657, 971
AflIII ACRYGT 1 cut(s) 830
AluBI AGCT 7 cut(s) 118, 389, 581, 717, 962, 1010, 1063
AluI AGCT 7 cut(s) 118, 389, 581, 717, 962, 1010, 1063
Alw21I GWGCWC 3 cut(s) 43, 946, 1065
Alw26I GTCTC 1 cut(s) 456
Alw44I GTGCAC 2 cut(s) 39, 942
AoxI GGCC 3 cut(s) 231, 523, 973
ApaLI GTGCAC 2 cut(s) 39, 942
ApoI RAATTY 4 cut(s) 199, 247, 311, 850
AspS9I GGNCC 2 cut(s) 66, 523
AsuHPI GGTGA 1 cut(s) 1070
AvaII GGWCC 1 cut(s) 66
BaeGI GKGCMC 3 cut(s) 43, 881, 946
BalI TGGCCA 1 cut(s) 975
BanII GRGCYC 1 cut(s) 1065
Bbv12I GWGCWC 3 cut(s) 43, 946, 1065
BccI CCATC 2 cut(s) 725, 803
BciVI GTATCC 1 cut(s) 661
BcoDI GTCTC 1 cut(s) 456
BfaI CTAG 2 cut(s) 432, 459
BfuI GTATCC 1 cut(s) 661
Bme18I GGWCC 1 cut(s) 66
BmgT120I GGNCC 2 cut(s) 66, 523
BmiI GGNNCC 1 cut(s) 1110
BmsI GCATC 1 cut(s) 157
BpmI CTGGAG 1 cut(s) 1071
BsaBI GATNNNNATC 2 cut(s) 366, 759
BsaJI CCNNGG 2 cut(s) 891, 1075
Bsc4I CCNNNNNNNGG 3 cut(s) 23, 657, 971
Bse1I ACTGG 1 cut(s) 1088
Bse8I GATNNNNATC 2 cut(s) 366, 759
BseDI CCNNGG 2 cut(s) 891, 1075
BseGI GGATG 2 cut(s) 226, 502
BseJI GATNNNNATC 2 cut(s) 366, 759
BseLI CCNNNNNNNGG 3 cut(s) 23, 657, 971
BseNI ACTGG 1 cut(s) 1088
BseRI GAGGAG 2 cut(s) 684, 954
BseSI GKGCMC 3 cut(s) 43, 881, 946
BsgI GTGCAG 1 cut(s) 108
BshFI GGCC 3 cut(s) 233, 525, 975
BsiHKAI GWGCWC 3 cut(s) 43, 946, 1065
BsiSI CCGG 1 cut(s) 257
BslI CCNNNNNNNGG 3 cut(s) 23, 657, 971
BsmAI GTCTC 1 cut(s) 456
BsnI GGCC 3 cut(s) 233, 525, 975
Bsp1286I GDGCHC 4 cut(s) 43, 881, 946, 1065
Bsp143I GATC 3 cut(s) 407, 422, 555
BspANI GGCC 3 cut(s) 233, 525, 975
BspHI TCATGA 1 cut(s) 370
BspLI GGNNCC 1 cut(s) 1110
BsrI ACTGG 1 cut(s) 1088
BssECI CCNNGG 2 cut(s) 891, 1075
BssMI GATC 3 cut(s) 407, 422, 555
BssT1I CCWWGG 1 cut(s) 891
Bst4CI ACNGT 6 cut(s) 125, 307, 450, 790, 1003, 1102
BstC8I GCNNGC 1 cut(s) 1012
BstDEI CTNAG 1 cut(s) 654
BstF5I GGATG 2 cut(s) 226, 502
BstKTI GATC 3 cut(s) 410, 425, 558
BstMAI GTCTC 1 cut(s) 456
BstMBI GATC 3 cut(s) 407, 422, 555
BstMWI GCNNNNNNNGC 2 cut(s) 587, 1069
BstNSI RCATGY 1 cut(s) 834
BstSLI GKGCMC 3 cut(s) 43, 881, 946
BsuI GTATCC 1 cut(s) 661
BsuRI GGCC 3 cut(s) 233, 525, 975
BtsCI GGATG 2 cut(s) 226, 502
BtsIMutI CAGTG 2 cut(s) 999, 1094
Cac8I GCNNGC 1 cut(s) 1012
CciI TCATGA 1 cut(s) 370
Cfr13I GGNCC 2 cut(s) 66, 523
Csp6I GTAC 4 cut(s) 144, 678, 786, 845
CviAII CATG 6 cut(s) 70, 293, 371, 748, 806, 831
CviQI GTAC 4 cut(s) 144, 678, 786, 845
DdeI CTNAG 1 cut(s) 654
DpnI GATC 3 cut(s) 409, 424, 557
DpnII GATC 3 cut(s) 407, 422, 555
DraIII CACNNNGTG 1 cut(s) 657
EaeI YGGCCR 1 cut(s) 973
Ecl136II GAGCTC 1 cut(s) 1063
Eco130I CCWWGG 1 cut(s) 891
Eco147I AGGCCT 1 cut(s) 233
Eco24I GRGCYC 1 cut(s) 1065
Eco47I GGWCC 1 cut(s) 66
Eco53kI GAGCTC 1 cut(s) 1063
Eco57I CTGAAG 3 cut(s) 405, 597, 612
EcoICRI GAGCTC 1 cut(s) 1063
EcoRI GAATTC 1 cut(s) 247
EcoT14I CCWWGG 1 cut(s) 891
EcoT22I ATGCAT 1 cut(s) 294
EcoT38I GRGCYC 1 cut(s) 1065
ErhI CCWWGG 1 cut(s) 891
FaeI CATG 6 cut(s) 73, 296, 374, 751, 809, 834
FalI AAGNNNNNCTT 2 cut(s) 412, 444
FatI CATG 6 cut(s) 69, 292, 370, 747, 805, 830
FauNDI CATATG 1 cut(s) 687
FokI GGATG 2 cut(s) 233, 509
FriOI GRGCYC 1 cut(s) 1065
FspBI CTAG 2 cut(s) 432, 459
GsuI CTGGAG 1 cut(s) 1071
HaeIII GGCC 3 cut(s) 233, 525, 975
HapII CCGG 1 cut(s) 257
Hin1II CATG 6 cut(s) 73, 296, 374, 751, 809, 834
HincII GTYRAC 1 cut(s) 828
HindII GTYRAC 1 cut(s) 828
HindIII AAGCTT 2 cut(s) 387, 715
HinfI GANTC 3 cut(s) 260, 691, 887
HpaII CCGG 1 cut(s) 257
HphI GGTGA 1 cut(s) 1070
Hpy166II GTNNAC 4 cut(s) 41, 828, 944, 1027
Hpy188I TCNGA 6 cut(s) 385, 415, 577, 613, 913, 1076
Hpy188III TCNNGA 2 cut(s) 371, 453
Hpy8I GTNNAC 4 cut(s) 41, 828, 944, 1027
HpyAV CCTTC 1 cut(s) 134
HpyCH4III ACNGT 6 cut(s) 125, 307, 450, 790, 1003, 1102
HpyCH4V TGCA 7 cut(s) 41, 89, 292, 768, 805, 944, 991
HpyF10VI GCNNNNNNNGC 2 cut(s) 587, 1069
HpyF3I CTNAG 1 cut(s) 654
Hsp92II CATG 6 cut(s) 73, 296, 374, 751, 809, 834
Kzo9I GATC 3 cut(s) 407, 422, 555
LmnI GCTCC 3 cut(s) 967, 1068, 1077
LpnPI CCDG 5 cut(s) 82, 270, 886, 977, 1101
LweI GCATC 1 cut(s) 157
MaeI CTAG 2 cut(s) 432, 459
MaeIII GTNAC 6 cut(s) 79, 277, 377, 931, 1003, 1090
MalI GATC 3 cut(s) 409, 424, 557
MboI GATC 3 cut(s) 407, 422, 555
MhlI GDGCHC 4 cut(s) 43, 881, 946, 1065
MlsI TGGCCA 1 cut(s) 975
MluCI AATT 6 cut(s) 199, 247, 311, 340, 548, 850
MluNI TGGCCA 1 cut(s) 975
MlyI GAGTC 2 cut(s) 254, 685
MmeI TCCRAC 1 cut(s) 645
MnlI CCTC 8 cut(s) 202, 345, 395, 455, 705, 975, 1070, 1099
Mox20I TGGCCA 1 cut(s) 975
Mph1103I ATGCAT 1 cut(s) 294
MscI TGGCCA 1 cut(s) 975
MseI TTAA 7 cut(s) 174, 197, 216, 236, 623, 819, 1117
MslI CAYNNNNRTG 3 cut(s) 165, 287, 912
Msp20I TGGCCA 1 cut(s) 975
MspI CCGG 1 cut(s) 257
MwoI GCNNNNNNNGC 2 cut(s) 587, 1069
NdeI CATATG 1 cut(s) 687
NdeII GATC 3 cut(s) 407, 422, 555
NlaIII CATG 6 cut(s) 73, 296, 374, 751, 809, 834
NlaIV GGNNCC 1 cut(s) 1110
NmuCI GTSAC 2 cut(s) 79, 1003
NsiI ATGCAT 1 cut(s) 294
NspI RCATGY 1 cut(s) 834
PagI TCATGA 1 cut(s) 370
PceI AGGCCT 1 cut(s) 233
PciI ACATGT 1 cut(s) 830
PfeI GAWTC 1 cut(s) 887
PflMI CCANNNNNTGG 1 cut(s) 657
PleI GAGTC 2 cut(s) 254, 685
PpsI GAGTC 2 cut(s) 254, 685
PscI ACATGT 1 cut(s) 830
Psp124BI GAGCTC 1 cut(s) 1065
PspN4I GGNNCC 1 cut(s) 1110
PspPI GGNCC 2 cut(s) 66, 523
RsaI GTAC 4 cut(s) 145, 679, 787, 846
RsaNI GTAC 4 cut(s) 144, 678, 786, 845
RseI CAYNNNNRTG 3 cut(s) 165, 287, 912
SacI GAGCTC 1 cut(s) 1065
SaqAI TTAA 7 cut(s) 174, 197, 216, 236, 623, 819, 1117
Sau3AI GATC 3 cut(s) 407, 422, 555
Sau96I GGNCC 2 cut(s) 66, 523
SchI GAGTC 2 cut(s) 254, 685
SduI GDGCHC 4 cut(s) 43, 881, 946, 1065
SfaNI GCATC 1 cut(s) 157
SinI GGWCC 1 cut(s) 66
SmiMI CAYNNNNRTG 3 cut(s) 165, 287, 912
Sse9I AATT 6 cut(s) 199, 247, 311, 340, 548, 850
SseBI AGGCCT 1 cut(s) 233
SspI AATATT 1 cut(s) 240
SspMI CTAG 2 cut(s) 432, 459
SstI GAGCTC 1 cut(s) 1065
StuI AGGCCT 1 cut(s) 233
StyI CCWWGG 1 cut(s) 891
TaaI ACNGT 6 cut(s) 125, 307, 450, 790, 1003, 1102
TaqI TCGA 2 cut(s) 454, 967
TasI AATT 6 cut(s) 199, 247, 311, 340, 548, 850
TatI WGTACW 1 cut(s) 677
TfiI GAWTC 1 cut(s) 887
Tru1I TTAA 7 cut(s) 174, 197, 216, 236, 623, 819, 1117
Tru9I TTAA 7 cut(s) 174, 197, 216, 236, 623, 819, 1117
TscAI CASTG 2 cut(s) 1006, 1101
TseFI GTSAC 2 cut(s) 79, 1003
Tsp45I GTSAC 2 cut(s) 79, 1003
TspDTI ATGAA 8 cut(s) 237, 353, 360, 513, 624, 736, 896, 971
TspRI CASTG 2 cut(s) 1006, 1101
Van91I CCANNNNNTGG 1 cut(s) 657
VneI GTGCAC 2 cut(s) 39, 942
VpaK11BI GGWCC 1 cut(s) 66
XapI RAATTY 4 cut(s) 199, 247, 311, 850
XceI RCATGY 1 cut(s) 834
XspI CTAG 2 cut(s) 432, 459
Zsp2I ATGCAT 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.