Prupe.4G233400_v2.0.a1

Pfam:UBN2_2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000278
Physical Location & Seq
Forward (+)
15037817 .. 15038210
394 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G233400.1

Sequence Viewer

Length: 366 bp
ATGGTGAGTGTGAAGGTCGAGTTGAAGCCATTCACCGACAAGGAGAACTTCATGCTTTGGCAAAGAAGGATGACACTCTTAGCATGCAAGAAAAAGAAGCTGAAAACCATGAAGGATGTTGAGTGGGAAGACCTAGAGGAGCTTGCTAGAGTATCCATCGAACAACATCTTAGTGACAAAGTGTTGTGTAATGCGATGGAAGACGCCGTGAAGCATGCATGGGAGAAACTTGAGGAGATGTTTGCGTCAATATATTTGTCCAAGAAGCTCTTCTTGAATGAGGAGTTTCACTCTCTAAAGATTGAAGAGGGCACAAACATGATAAAGCACATCAGCGCCTTTAATTGGTGTATTGCGGACTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

14.37

Weight (kDa)

6.1

Isoelectric Point (pI)

32.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 356
AcyI GRCGYC 1 cut(s) 204
AfiI CCNNNNNNNGG 1 cut(s) 345
AgsI TTSAA 3 cut(s) 25, 277, 305
AjuI GAANNNNNNNTTGG 2 cut(s) 254, 286
AluBI AGCT 3 cut(s) 100, 142, 268
AluI AGCT 3 cut(s) 100, 142, 268
Asp700I GAANNNNTTC 2 cut(s) 29, 269
AspLEI GCGC 1 cut(s) 338
AsuHPI GGTGA 2 cut(s) 16, 25
BaeGI GKGCMC 1 cut(s) 314
BbsI GAAGAC 2 cut(s) 135, 207
BccI CCATC 2 cut(s) 164, 190
BceAI ACGGC 1 cut(s) 191
BciVI GTATCC 1 cut(s) 163
BfaI CTAG 2 cut(s) 134, 147
BfoI RGCGCY 1 cut(s) 339
BfuI GTATCC 1 cut(s) 163
BpiI GAAGAC 2 cut(s) 135, 207
BplI GAGNNNNNCTC 2 cut(s) 275, 307
BpuEI CTTGAG 1 cut(s) 251
BsaHI GRCGYC 1 cut(s) 204
Bsc4I CCNNNNNNNGG 1 cut(s) 345
BseGI GGATG 2 cut(s) 75, 121
BseLI CCNNNNNNNGG 1 cut(s) 345
BseRI GAGGAG 3 cut(s) 152, 248, 296
BseSI GKGCMC 1 cut(s) 314
BslI CCNNNNNNNGG 1 cut(s) 345
Bsp1286I GDGCHC 1 cut(s) 314
BspACI CCGC 1 cut(s) 356
BspQI GCTCTTC 1 cut(s) 275
BssNI GRCGYC 1 cut(s) 204
Bst6I CTCTTC 2 cut(s) 275, 300
BstACI GRCGYC 1 cut(s) 204
BstC8I GCNNGC 3 cut(s) 85, 144, 216
BstDEI CTNAG 2 cut(s) 79, 170
BstF5I GGATG 2 cut(s) 75, 121
BstH2I RGCGCY 1 cut(s) 339
BstHHI GCGC 1 cut(s) 338
BstNSI RCATGY 2 cut(s) 87, 218
BstSLI GKGCMC 1 cut(s) 314
BstV2I GAAGAC 2 cut(s) 135, 207
BsuI GTATCC 1 cut(s) 163
BtgZI GCGATG 1 cut(s) 209
BtsCI GGATG 2 cut(s) 75, 121
Cac8I GCNNGC 3 cut(s) 85, 144, 216
CfoI GCGC 1 cut(s) 338
CseI GACGC 2 cut(s) 212, 234
CviAII CATG 6 cut(s) 52, 84, 109, 215, 219, 319
CviJI RGCY 4 cut(s) 28, 100, 142, 268
CviKI_1 RGCY 4 cut(s) 28, 100, 142, 268
DdeI CTNAG 2 cut(s) 79, 170
Eam1104I CTCTTC 2 cut(s) 275, 300
EarI CTCTTC 2 cut(s) 275, 300
EcoT22I ATGCAT 1 cut(s) 220
FaeI CATG 6 cut(s) 55, 87, 112, 218, 222, 322
FaiI YATR 7 cut(s) 53, 85, 110, 216, 220, 253, 320
FalI AAGNNNNNCTT 6 cut(s) 32, 64, 254, 286, 257, 289
FatI CATG 6 cut(s) 51, 83, 108, 214, 218, 318
FokI GGATG 2 cut(s) 82, 128
FspBI CTAG 2 cut(s) 134, 147
GlaI GCGC 1 cut(s) 337
HaeII RGCGCY 1 cut(s) 339
HgaI GACGC 2 cut(s) 212, 234
HhaI GCGC 1 cut(s) 338
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 6 cut(s) 55, 87, 112, 218, 222, 322
Hin6I GCGC 1 cut(s) 336
HinP1I GCGC 1 cut(s) 336
HphI GGTGA 2 cut(s) 16, 25
Hpy188III TCNNGA 1 cut(s) 274
HpyAV CCTTC 3 cut(s) 7, 60, 106
HpyCH4V TGCA 2 cut(s) 87, 218
HpyF3I CTNAG 2 cut(s) 79, 170
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 6 cut(s) 55, 87, 112, 218, 222, 322
HspAI GCGC 1 cut(s) 336
LguI GCTCTTC 1 cut(s) 275
LmnI GCTCC 1 cut(s) 139
MaeI CTAG 2 cut(s) 134, 147
MaeIII GTNAC 1 cut(s) 173
MboII GAAGA 4 cut(s) 140, 212, 262, 317
MhlI GDGCHC 1 cut(s) 314
MluCI AATT 1 cut(s) 343
MnlI CCTC 4 cut(s) 130, 226, 274, 301
Mph1103I ATGCAT 1 cut(s) 220
MroXI GAANNNNTTC 2 cut(s) 29, 269
MseI TTAA 1 cut(s) 342
MslI CAYNNNNRTG 2 cut(s) 171, 317
NlaIII CATG 6 cut(s) 55, 87, 112, 218, 222, 322
NmuCI GTSAC 1 cut(s) 173
NsiI ATGCAT 1 cut(s) 220
NspI RCATGY 2 cut(s) 87, 218
PaeI GCATGC 2 cut(s) 87, 218
PciSI GCTCTTC 1 cut(s) 275
PdmI GAANNNNTTC 2 cut(s) 29, 269
RseI CAYNNNNRTG 2 cut(s) 171, 317
SapI GCTCTTC 1 cut(s) 275
SaqAI TTAA 1 cut(s) 342
SduI GDGCHC 1 cut(s) 314
SetI ASST 5 cut(s) 18, 102, 135, 144, 270
SmiMI CAYNNNNRTG 2 cut(s) 171, 317
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
SphI GCATGC 2 cut(s) 87, 218
Sse9I AATT 1 cut(s) 343
SsiI CCGC 1 cut(s) 356
SspMI CTAG 2 cut(s) 134, 147
TaqI TCGA 2 cut(s) 18, 159
TasI AATT 1 cut(s) 343
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TseFI GTSAC 1 cut(s) 173
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 2 cut(s) 40, 125
XceI RCATGY 2 cut(s) 87, 218
XmnI GAANNNNTTC 2 cut(s) 29, 269
XspI CTAG 2 cut(s) 134, 147
Zsp2I ATGCAT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.