Rroxscaffold_7G00203820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000278
Physical Location & Seq
Reverse (-)
52757900 .. 52758470
571 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00203820.1

Sequence Viewer

Length: 180 bp
ATGAGTAGGGAGACCAAAAGCTCTCAAGGAGGCCTTCATGTCAAAGGCAAGGAGACAGGTCAGTTGACGAGTAAGAAGGATAAATTTGGTAACAAGGGTACATCAAAATCCAAGGAAAAATACAAGAAAGGTTGCTTCAAATGTGGTGCTGCCGACCACTTGAAAAGAAACTGCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

59

Amino Acids

6.49

Weight (kDa)

10.03

Isoelectric Point (pI)

21.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 83
AfaI GTAC 1 cut(s) 100
AgsI TTSAA 2 cut(s) 139, 163
AluBI AGCT 1 cut(s) 21
AluI AGCT 1 cut(s) 21
Alw26I GTCTC 2 cut(s) 5, 47
AoxI GGCC 1 cut(s) 31
ApeKI GCWGC 1 cut(s) 149
ApoI RAATTY 1 cut(s) 83
BbvI GCAGC 1 cut(s) 136
BcoDI GTCTC 2 cut(s) 5, 47
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
BpuEI CTTGAG 1 cut(s) 9
BsaI GGTCTC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 111
BseXI GCAGC 1 cut(s) 136
BshFI GGCC 1 cut(s) 33
BsmAI GTCTC 2 cut(s) 5, 47
BsnI GGCC 1 cut(s) 33
Bso31I GGTCTC 1 cut(s) 5
BspANI GGCC 1 cut(s) 33
BspTNI GGTCTC 1 cut(s) 5
BssECI CCNNGG 1 cut(s) 111
BssT1I CCWWGG 1 cut(s) 111
BstMAI GTCTC 2 cut(s) 5, 47
BstV1I GCAGC 1 cut(s) 136
BsuRI GGCC 1 cut(s) 33
Csp6I GTAC 1 cut(s) 99
CviAII CATG 1 cut(s) 38
CviJI RGCY 2 cut(s) 21, 33
CviKI_1 RGCY 2 cut(s) 21, 33
CviQI GTAC 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 111
Eco147I AGGCCT 1 cut(s) 33
Eco31I GGTCTC 1 cut(s) 5
EcoT14I CCWWGG 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 1 cut(s) 41
FaiI YATR 1 cut(s) 39
FalI AAGNNNNNCTT 2 cut(s) 18, 50
FatI CATG 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 150
Fsp4HI GCNGC 1 cut(s) 150
GluI GCNGC 1 cut(s) 150
HaeIII GGCC 1 cut(s) 33
Hin1II CATG 1 cut(s) 41
HincII GTYRAC 1 cut(s) 66
HindII GTYRAC 1 cut(s) 66
Hpy166II GTNNAC 1 cut(s) 66
Hpy8I GTNNAC 1 cut(s) 66
HpyAV CCTTC 2 cut(s) 44, 70
HpyCH4V TGCA 1 cut(s) 174
Hsp92II CATG 1 cut(s) 41
LpnPI CCDG 1 cut(s) 42
Lsp1109I GCAGC 1 cut(s) 136
MaeIII GTNAC 1 cut(s) 89
MluCI AATT 1 cut(s) 83
MnlI CCTC 1 cut(s) 23
NlaIII CATG 1 cut(s) 41
PceI AGGCCT 1 cut(s) 33
PkrI GCNGC 1 cut(s) 151
RsaI GTAC 1 cut(s) 100
RsaNI GTAC 1 cut(s) 99
SatI GCNGC 1 cut(s) 150
SetI ASST 3 cut(s) 23, 61, 133
SgeI CNNG 9 cut(s) 38, 50, 61, 69, 81, 106, 124, 136, 172
SmlI CTYRAG 1 cut(s) 24
SmoI CTYRAG 1 cut(s) 24
Sse9I AATT 1 cut(s) 83
SseBI AGGCCT 1 cut(s) 33
StuI AGGCCT 1 cut(s) 33
StyI CCWWGG 1 cut(s) 111
TasI AATT 1 cut(s) 83
TseI GCWGC 1 cut(s) 149
TspDTI ATGAA 1 cut(s) 26
XapI RAATTY 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.