FvH4_4g14601

DNA integration

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000278
Physical Location & Seq
Reverse (-)
18301616 .. 18305751
4136 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g14601.t1

Sequence Viewer

Length: 969 bp
ATGGGTGATGAACATGGAGATGCAGAGAGATTTACAAGAACCACAGTTCAGAATGCAAAGTTCGAGGTGGAGAAATTCGATGGTACAAACAACTTTGGGATGTGGCAGTGTGAAGTGAAAGATGTGTTAGCTCAACAAGATTTGGATATGGCTTTAGAAGATAGGCCCGAGGGTATGTCAGATAAAGATTGGCAGAAGATAAATAAGATGGCTTGCTCTACGATTCGCTTATGTTTGGCGAAGCAGCAAAAGTTCGATGTGATGCGGGAAACAACTGCAAAAAAGCTGTGGCAGAAGTTAGAAGACAAATACATGACGAAAAGTGCTGAGAATCGTCTGCATTTGAAGAGGAGGCTGTTCAATTTCAAGTACAAAGAAGGTACGAAGATGATTCACCATCTTGATGCTTTTAATAAATTGGTTGCCGATTTGTTGAATCTAGATGAAAAAATTAAAGATGAAGATAAAGCTATGTTGTTAGTGAATTCTCTGCCAGATTCATATGAACATTTGGTAACTACTCTTCTTCATGGTAAAGAGACTATTAAGTTTGAGGAAGTCTCTAATGCTCTGACGAATTATGAAATTAGACATGCCGATAAGCAGAGCACTGCATCTACCTCAGATTGTTTGGTTGTTAGAGGCAAGGCAGTTGAAAGGAAAAATTACGGCGGGCCTCAAATTGAAGAAGAACATGAAGAAGTGAATGGTGAACAGCTGCATGTCCAAGATGATGATGTGGCTCCTATTGTCCCTGAACAGCAGCCTATTGCGGTGAGAAGAGAAAAGAGAACAATCAAAAAGCCTGCAAGATTTGAAGATTGTGTTGCTTATGCCTATCCTGTTATCACTAAGTTGATTGAGCAGCAGGGAGCTTGGTTTGTTGGTACTGCAGGGTATGAAGGCTCAGTGAGTGCAGCTGCTGTTATGAAGTCTGCAAATCTCGCCAAGGTGGAGATTGTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 gag_pre-integrs

Protein Analysis

323

Amino Acids

36.8

Weight (kDa)

5.81

Isoelectric Point (pI)

39.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 56 - 201 1.7e-32 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 265, 672, 773
AcsI RAATTY 2 cut(s) 74, 484
AfaI GTAC 4 cut(s) 85, 371, 382, 889
AgsI TTSAA 7 cut(s) 346, 361, 367, 436, 656, 686, 818
AluBI AGCT 6 cut(s) 131, 286, 470, 718, 875, 920
AluI AGCT 6 cut(s) 131, 286, 470, 718, 875, 920
Alw21I GWGCWC 1 cut(s) 611
Alw26I GTCTC 2 cut(s) 533, 565
AlwNI CAGNNNCTG 1 cut(s) 923
Ama87I CYCGRG 1 cut(s) 167
AoxI GGCC 2 cut(s) 164, 674
ApeKI GCWGC 6 cut(s) 244, 718, 763, 865, 917, 920
ApoI RAATTY 2 cut(s) 74, 484
AspS9I GGNCC 2 cut(s) 165, 674
AsuHPI GGTGA 4 cut(s) 17, 386, 722, 787
AvaI CYCGRG 1 cut(s) 167
BarI GAAGNNNNNNTAC 2 cut(s) 507, 539
BbsI GAAGAC 1 cut(s) 309
Bbv12I GWGCWC 1 cut(s) 611
BbvI GCAGC 6 cut(s) 256, 705, 775, 877, 907, 929
BccI CCATC 3 cut(s) 74, 202, 405
BceAI ACGGC 1 cut(s) 685
BcoDI GTCTC 2 cut(s) 533, 565
BfaI CTAG 1 cut(s) 440
BfmI CTRYAG 1 cut(s) 891
BisI GCNGC 6 cut(s) 245, 719, 764, 866, 918, 921
BlsI GCNGC 6 cut(s) 246, 720, 765, 867, 919, 922
BmeT110I CYCGRG 1 cut(s) 167
BmgT120I GGNCC 2 cut(s) 165, 674
BmiI GGNNCC 1 cut(s) 744
BmsI GCATC 4 cut(s) 10, 252, 394, 623
BpiI GAAGAC 1 cut(s) 309
BplI GAGNNNNNCTC 2 cut(s) 545, 577
BsaJI CCNNGG 2 cut(s) 168, 948
BseDI CCNNGG 2 cut(s) 168, 948
BseGI GGATG 1 cut(s) 105
BseMII CTCAG 3 cut(s) 318, 636, 921
BseRI GAGGAG 1 cut(s) 364
BseXI GCAGC 6 cut(s) 256, 705, 775, 877, 907, 929
BsgI GTGCAG 1 cut(s) 936
BshFI GGCC 2 cut(s) 166, 676
BsiHKAI GWGCWC 1 cut(s) 611
BsiHKCI CYCGRG 1 cut(s) 167
BslFI GGGAC 1 cut(s) 737
BsmAI GTCTC 2 cut(s) 533, 565
BsmFI GGGAC 1 cut(s) 737
BsmI GAATGC 1 cut(s) 58
BsnI GGCC 2 cut(s) 166, 676
BsoBI CYCGRG 1 cut(s) 167
Bsp1286I GDGCHC 1 cut(s) 611
BspACI CCGC 3 cut(s) 265, 672, 773
BspANI GGCC 2 cut(s) 166, 676
BspCNI CTCAG 3 cut(s) 319, 635, 920
BspLI GGNNCC 1 cut(s) 744
BspMAI CTGCAG 1 cut(s) 895
BssECI CCNNGG 2 cut(s) 168, 948
BssT1I CCWWGG 1 cut(s) 948
Bst4CI ACNGT 1 cut(s) 46
Bst6I CTCTTC 3 cut(s) 341, 528, 775
BstC8I GCNNGC 3 cut(s) 214, 674, 807
BstDEI CTNAG 4 cut(s) 327, 622, 852, 907
BstF5I GGATG 1 cut(s) 105
BstMAI GTCTC 2 cut(s) 533, 565
BstMWI GCNNNNNNNGC 1 cut(s) 944
BstNSI RCATGY 2 cut(s) 596, 725
BstSFI CTRYAG 1 cut(s) 891
BstV1I GCAGC 6 cut(s) 256, 705, 775, 877, 907, 929
BstV2I GAAGAC 1 cut(s) 309
BsuRI GGCC 2 cut(s) 166, 676
BtsCI GGATG 1 cut(s) 105
BtsI GCAGTG 2 cut(s) 113, 609
BtsIMutI CAGTG 3 cut(s) 113, 609, 915
Cac8I GCNNGC 3 cut(s) 214, 674, 807
CaiI CAGNNNCTG 1 cut(s) 923
Cfr13I GGNCC 2 cut(s) 165, 674
Csp6I GTAC 4 cut(s) 84, 370, 381, 888
CviAII CATG 6 cut(s) 14, 313, 530, 593, 695, 722
CviQI GTAC 4 cut(s) 84, 370, 381, 888
DdeI CTNAG 4 cut(s) 327, 622, 852, 907
Eam1104I CTCTTC 3 cut(s) 341, 528, 775
EarI CTCTTC 3 cut(s) 341, 528, 775
Eco130I CCWWGG 1 cut(s) 948
Eco88I CYCGRG 1 cut(s) 167
EcoRI GAATTC 1 cut(s) 484
EcoT14I CCWWGG 1 cut(s) 948
ErhI CCWWGG 1 cut(s) 948
FaeI CATG 6 cut(s) 17, 316, 533, 596, 698, 725
FaqI GGGAC 1 cut(s) 737
FatI CATG 6 cut(s) 13, 312, 529, 592, 694, 721
FauI CCCGC 2 cut(s) 258, 665
FauNDI CATATG 1 cut(s) 502
Fnu4HI GCNGC 6 cut(s) 245, 719, 764, 866, 918, 921
FokI GGATG 1 cut(s) 112
Fsp4HI GCNGC 6 cut(s) 245, 719, 764, 866, 918, 921
FspBI CTAG 1 cut(s) 440
GluI GCNGC 6 cut(s) 245, 719, 764, 866, 918, 921
HaeIII GGCC 2 cut(s) 166, 676
Hin1II CATG 6 cut(s) 17, 316, 533, 596, 698, 725
HinfI GANTC 5 cut(s) 223, 331, 391, 436, 497
HphI GGTGA 4 cut(s) 17, 386, 722, 787
Hpy166II GTNNAC 1 cut(s) 713
Hpy188I TCNGA 4 cut(s) 51, 181, 573, 625
Hpy188III TCNNGA 2 cut(s) 401, 440
Hpy8I GTNNAC 1 cut(s) 713
HpyAV CCTTC 2 cut(s) 371, 896
HpyCH4III ACNGT 1 cut(s) 46
HpyF10VI GCNNNNNNNGC 1 cut(s) 944
HpyF3I CTNAG 4 cut(s) 327, 622, 852, 907
Hsp92II CATG 6 cut(s) 17, 316, 533, 596, 698, 725
LmnI GCTCC 2 cut(s) 748, 872
LpnPI CCDG 6 cut(s) 507, 768, 819, 854, 855, 879
Lsp1109I GCAGC 6 cut(s) 256, 705, 775, 877, 907, 929
LweI GCATC 4 cut(s) 10, 252, 394, 623
MaeI CTAG 1 cut(s) 440
MaeIII GTNAC 1 cut(s) 514
MhlI GDGCHC 1 cut(s) 611
MluCI AATT 9 cut(s) 74, 361, 416, 450, 484, 577, 585, 664, 681
MnlI CCTC 8 cut(s) 58, 163, 342, 345, 547, 631, 635, 687
MseI TTAA 3 cut(s) 411, 453, 546
MslI CAYNNNNRTG 2 cut(s) 18, 402
MspA1I CMGCKG 2 cut(s) 718, 920
Mva1269I GAATGC 1 cut(s) 58
MwoI GCNNNNNNNGC 1 cut(s) 944
NdeI CATATG 1 cut(s) 502
NlaIII CATG 6 cut(s) 17, 316, 533, 596, 698, 725
NlaIV GGNNCC 1 cut(s) 744
NspI RCATGY 2 cut(s) 596, 725
PctI GAATGC 1 cut(s) 58
PfeI GAWTC 5 cut(s) 223, 331, 391, 436, 497
PkrI GCNGC 6 cut(s) 246, 720, 765, 867, 919, 922
PspN4I GGNNCC 1 cut(s) 744
PspPI GGNCC 2 cut(s) 165, 674
PstI CTGCAG 1 cut(s) 895
PstNI CAGNNNCTG 1 cut(s) 923
PvuII CAGCTG 2 cut(s) 718, 920
RsaI GTAC 4 cut(s) 85, 371, 382, 889
RsaNI GTAC 4 cut(s) 84, 370, 381, 888
RseI CAYNNNNRTG 2 cut(s) 18, 402
SaqAI TTAA 3 cut(s) 411, 453, 546
SatI GCNGC 6 cut(s) 245, 719, 764, 866, 918, 921
Sau96I GGNCC 2 cut(s) 165, 674
SduI GDGCHC 1 cut(s) 611
SfaNI GCATC 4 cut(s) 10, 252, 394, 623
SfcI CTRYAG 1 cut(s) 891
SmiMI CAYNNNNRTG 2 cut(s) 18, 402
Sse9I AATT 9 cut(s) 74, 361, 416, 450, 484, 577, 585, 664, 681
SsiI CCGC 3 cut(s) 265, 672, 773
SspMI CTAG 1 cut(s) 440
StyI CCWWGG 1 cut(s) 948
TaaI ACNGT 1 cut(s) 46
TaqI TCGA 3 cut(s) 63, 78, 255
TasI AATT 9 cut(s) 74, 361, 416, 450, 484, 577, 585, 664, 681
TatI WGTACW 1 cut(s) 369
TfiI GAWTC 5 cut(s) 223, 331, 391, 436, 497
Tru1I TTAA 3 cut(s) 411, 453, 546
Tru9I TTAA 3 cut(s) 411, 453, 546
TscAI CASTG 3 cut(s) 113, 616, 915
TseI GCWGC 6 cut(s) 244, 718, 763, 865, 917, 920
TspRI CASTG 3 cut(s) 113, 616, 915
XapI RAATTY 2 cut(s) 74, 484
XbaI TCTAGA 1 cut(s) 439
XceI RCATGY 2 cut(s) 596, 725
XspI CTAG 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.