Rh6AG422000

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000278
Physical Location & Seq
Reverse (-)
61521020 .. 61522951
1932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG422000.1

Sequence Viewer

Length: 822 bp
ATGTCTGAGTGGCACCACCATTACTACCCGGAATACGAACCAGACCTGGACTATTACATCAATGGTCCATCGAGGGAGCCCCAGAAATTTAATGGCAAAGGTGATTTTAGGCTTTGGGAAGTAGAGGTATGTGATATACTTGGATATGAGGGCGTGGTGGAAGCTTTGGATGGGAAGCCAGACTCTATGAAGCAAGGCGAGTGGAAGGTGTTTGATGAGAAAGCTTGCTCGATTCTGCGATTCTATTTGTCCGAAGAGGTCCAGAACAAAGTGGTGGCTGAGAAGTCGTCCAAGGACATTTTGGAGAAACTTGAGAGGCTTTATTTGAAGAAGGAATCGTTCATCGAGAGGATCAGTCTCAAGATGCAGCTTTACAAGATGAGGATGGATGAGAGCACTACTAGTTTGCGGGACCATCTTGAGGAGTTTAACAGGAGGGTGACGGAGCTGTCGGAGTTTGAGGTGGAGCTGAGTGAGGAAGACAAGGTTTCGATTCTTCTGGCGTCGCTTCCTGAGAAGTATAATAATTTGGTGATGGGCATGCTGTATGCGAAGGACAGTGTAGACTGTTATGAAGTCGAAGAAATGCTCCTCTTCAATGACAATAGGAATGCAGTGGCCAGAAACCAGAATAGGATTGCTGAAGCTAAAGCTGGGGTGACAAAAGATCAGGGTTCCTGTGGTGGCTCTAAGAGTTCCTCTGGGTCTTCTAAATCAAGAAATCATAAAGTTGTAGAGTGTCATTACTGTCATGAAATTGGACATGTTCTGAATCACTGTCCCAAACTGGAGCTGAAGAAAGCGAGGAATATGAATTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve zf-CCHC

Protein Analysis

273

Amino Acids

31.75

Weight (kDa)

5.5

Isoelectric Point (pI)

54.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 61 - 203 2.7e-25 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29785
fragaria_vesca FvH4_1g10046 FvH4_1g17351 FvH4_1g18441 FvH4_1g24222 FvH4_2g00141 FvH4_2g05931 FvH4_2g06671 FvH4_2g14030 FvH4_2g15291 FvH4_2g22611 FvH4_2g22612 FvH4_2g26380 FvH4_2g39202 FvH4_2g39202 FvH4_3g06691 FvH4_3g08580 FvH4_3g20502 FvH4_3g20503 FvH4_3g22421 FvH4_3g42580 FvH4_4g02061 FvH4_4g06794 FvH4_4g08661 FvH4_4g11771 FvH4_4g14601 FvH4_4g14721 FvH4_4g20921 FvH4_4g33601 FvH4_4g33602 FvH4_5g07492 FvH4_5g20321 FvH4_5g21591 FvH4_5g30343 FvH4_5g37875 FvH4_6g04372 FvH4_6g04373 FvH4_6g04373 FvH4_6g21377 FvH4_6g23760 FvH4_6g29471 FvH4_6g43142 FvH4_7g14351 FvH4_7g14352 FvH4_7g22582 FvH4_7g22583 FvH4_7g22584
malus_domestica MD00G1179400.v1.1 MD01G1170500.v1.1 MD03G1286700.v1.1 MD04G1054600.v1.1 MD04G1071700.v1.1 MD04G1193900.v1.1 MD08G1054300.v1.1 MD08G1217500.v1.1 MD09G1034600.v1.1 MD09G1098100.v1.1 MD10G1018300.v1.1 MD10G1220000.v1.1 MD10G1250300.v1.1 MD12G1014400.v1.1 MD15G1021000.v1.1 MD16G1112200.v1.1
prunus_persica Prupe.1G188900_v2.0.a1 Prupe.1G258000_v2.0.a1 Prupe.4G233400_v2.0.a1
pyrus_communis pycom01g10100 pycom02g01340 pycom03g19700 pycom05g01320 pycom07g16000 pycom07g16520 pycom11g26500 pycom13g09380 pycom13g13960 pycom14g08180 pycom14g16810 pycom16g09590
rosa_chinensis RchiOBHm_Chr1g0319891 RchiOBHm_Chr1g0333711 RchiOBHm_Chr2g0115331 RchiOBHm_Chr2g0143411 RchiOBHm_Chr2g0167631 RchiOBHm_Chr3g0448581 RchiOBHm_Chr3g0494991 RchiOBHm_Chr4g0442471 RchiOBHm_Chr6g0262311 RchiOBHm_Chr6g0301831 RchiOBHm_Chr6g0301841 RchiOBHm_Chr7g0183451
rosa_roxburghii Rroxscaffold_1G00039280 Rroxscaffold_1G00047670 Rroxscaffold_1G00066330 Rroxscaffold_2G00107510 Rroxscaffold_3G00255410 Rroxscaffold_4G00301460 Rroxscaffold_5G00352730 Rroxscaffold_7G00166350 Rroxscaffold_7G00166360 Rroxscaffold_7G00203820
rosa_rugosa Rorug03G0240500 Rorug05G0191700 Rorug06G0310200
rosa_samantha Rh2BG287000 Rh4CG073500 Rh4CG176200 Rh4CG191400 Rh5BG356100 Rh5BG434100 Rh6AG110600 Rh6AG421900 Rh6AG422000 Rh6AG422100 Rh6BG428600 Rh6BG428700 Rh6BG428800 Rh6CG435200 Rh6CG435300 Rh6CG435400 Rh6DG422000 Rh6DG422100 Rh6DG422200 Rh7BG190500 Rh7CG172800 Rh7CG225200
rosa_wichuraiana Rw2G044060 Rw6G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 448
AccB1I GGYRCC 1 cut(s) 12
AccI GTMKAC 1 cut(s) 564
AciI CCGC 1 cut(s) 409
AclWI GGATC 1 cut(s) 359
AcoI YGGCCR 1 cut(s) 618
AcsI RAATTY 2 cut(s) 86, 814
AcuI CTGAAG 2 cut(s) 663, 815
AcyI GRCGYC 1 cut(s) 503
AfiI CCNNNNNNNGG 1 cut(s) 421
AflIII ACRYGT 1 cut(s) 763
AgsI TTSAA 2 cut(s) 328, 598
AhlI ACTAGT 1 cut(s) 401
AjnI CCWGG 1 cut(s) 45
AluBI AGCT 8 cut(s) 164, 224, 370, 448, 469, 647, 653, 793
AluI AGCT 8 cut(s) 164, 224, 370, 448, 469, 647, 653, 793
Alw21I GWGCWC 1 cut(s) 398
Alw26I GTCTC 1 cut(s) 362
AlwI GGATC 1 cut(s) 359
AoxI GGCC 1 cut(s) 618
ApeKI GCWGC 1 cut(s) 367
ApoI RAATTY 2 cut(s) 86, 814
AspS9I GGNCC 3 cut(s) 65, 259, 412
AsuC2I CCSGG 1 cut(s) 29
AsuHPI GGTGA 4 cut(s) 113, 451, 544, 670
AvaII GGWCC 3 cut(s) 65, 259, 412
BalI TGGCCA 1 cut(s) 620
BanI GGYRCC 1 cut(s) 12
BanII GRGCYC 1 cut(s) 81
BbsI GAAGAC 2 cut(s) 486, 699
Bbv12I GWGCWC 1 cut(s) 398
BbvI GCAGC 1 cut(s) 379
BccI CCATC 5 cut(s) 76, 164, 379, 423, 529
BciT130I CCWGG 1 cut(s) 47
BcnI CCSGG 1 cut(s) 29
BcoDI GTCTC 1 cut(s) 362
BcuI ACTAGT 1 cut(s) 401
BfaI CTAG 1 cut(s) 402
BisI GCNGC 1 cut(s) 368
BlsI GCNGC 1 cut(s) 369
Bme1390I CCNGG 2 cut(s) 29, 47
Bme18I GGWCC 3 cut(s) 65, 259, 412
BmgT120I GGNCC 3 cut(s) 65, 259, 412
BmiI GGNNCC 4 cut(s) 14, 78, 413, 676
BmrFI CCNGG 2 cut(s) 29, 47
BmsI GCATC 1 cut(s) 354
BpiI GAAGAC 2 cut(s) 486, 699
BpmI CTGGAG 1 cut(s) 809
BpuEI CTTGAG 3 cut(s) 332, 344, 440
BpuMI CCSGG 1 cut(s) 29
BsaHI GRCGYC 1 cut(s) 503
BsaJI CCNNGG 1 cut(s) 291
Bsc4I CCNNNNNNNGG 1 cut(s) 421
Bse1I ACTGG 1 cut(s) 792
BseBI CCWGG 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 291
BseGI GGATG 3 cut(s) 175, 390, 394
BseLI CCNNNNNNNGG 1 cut(s) 421
BseMII CTCAG 3 cut(s) 270, 461, 504
BseNI ACTGG 1 cut(s) 792
BseRI GAGGAG 2 cut(s) 437, 581
BseXI GCAGC 1 cut(s) 379
BseYI CCCAGC 1 cut(s) 653
BshFI GGCC 1 cut(s) 620
BshNI GGYRCC 1 cut(s) 12
BsiHKAI GWGCWC 1 cut(s) 398
BsiSI CCGG 1 cut(s) 29
BslFI GGGAC 2 cut(s) 425, 765
BslI CCNNNNNNNGG 1 cut(s) 421
BsmAI GTCTC 1 cut(s) 362
BsmFI GGGAC 2 cut(s) 425, 765
BsmI GAATGC 1 cut(s) 616
BsnI GGCC 1 cut(s) 620
Bsp1286I GDGCHC 2 cut(s) 81, 398
Bsp143I GATC 2 cut(s) 351, 667
BspACI CCGC 1 cut(s) 409
BspANI GGCC 1 cut(s) 620
BspCNI CTCAG 3 cut(s) 271, 462, 505
BspHI TCATGA 1 cut(s) 751
BspLI GGNNCC 4 cut(s) 14, 78, 413, 676
BspPI GGATC 1 cut(s) 359
BspT107I GGYRCC 1 cut(s) 12
BsrI ACTGG 1 cut(s) 792
BssECI CCNNGG 1 cut(s) 291
BssMI GATC 2 cut(s) 351, 667
BssNI GRCGYC 1 cut(s) 503
BssT1I CCWWGG 1 cut(s) 291
Bst2UI CCWGG 1 cut(s) 47
Bst4CI ACNGT 4 cut(s) 560, 569, 749, 779
Bst6I CTCTTC 2 cut(s) 249, 599
BstACI GRCGYC 1 cut(s) 503
BstC8I GCNNGC 2 cut(s) 226, 542
BstDEI CTNAG 5 cut(s) 6, 279, 470, 513, 690
BstF5I GGATG 3 cut(s) 175, 390, 394
BstKTI GATC 2 cut(s) 354, 670
BstMAI GTCTC 1 cut(s) 362
BstMBI GATC 2 cut(s) 351, 667
BstNI CCWGG 1 cut(s) 47
BstNSI RCATGY 2 cut(s) 544, 767
BstSCI CCNGG 2 cut(s) 27, 45
BstV1I GCAGC 1 cut(s) 379
BstV2I GAAGAC 2 cut(s) 486, 699
BsuRI GGCC 1 cut(s) 620
BtsCI GGATG 3 cut(s) 175, 390, 394
BtsI GCAGTG 1 cut(s) 621
BtsIMutI CAGTG 3 cut(s) 565, 621, 775
Cac8I GCNNGC 2 cut(s) 226, 542
CciI TCATGA 1 cut(s) 751
Cfr13I GGNCC 3 cut(s) 65, 259, 412
CseI GACGC 1 cut(s) 492
CspCI CAANNNNNGTGG 2 cut(s) 182, 217
CviAII CATG 3 cut(s) 541, 752, 764
DdeI CTNAG 5 cut(s) 6, 279, 470, 513, 690
DpnI GATC 2 cut(s) 353, 669
DpnII GATC 2 cut(s) 351, 667
DrdI GACNNNNNNGTC 1 cut(s) 448
DseDI GACNNNNNNGTC 1 cut(s) 448
EaeI YGGCCR 1 cut(s) 618
Eam1104I CTCTTC 2 cut(s) 249, 599
EarI CTCTTC 2 cut(s) 249, 599
Eco130I CCWWGG 1 cut(s) 291
Eco24I GRGCYC 1 cut(s) 81
Eco47I GGWCC 3 cut(s) 65, 259, 412
Eco57I CTGAAG 2 cut(s) 663, 815
EcoRII CCWGG 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 291
EcoT38I GRGCYC 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 291
FaeI CATG 3 cut(s) 544, 755, 767
FaqI GGGAC 2 cut(s) 425, 765
FatI CATG 3 cut(s) 540, 751, 763
FauI CCCGC 1 cut(s) 402
FblI GTMKAC 1 cut(s) 564
Fnu4HI GCNGC 1 cut(s) 368
FokI GGATG 3 cut(s) 182, 397, 401
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 368
FspBI CTAG 1 cut(s) 402
GluI GCNGC 1 cut(s) 368
GsaI CCCAGC 1 cut(s) 657
GsuI CTGGAG 1 cut(s) 809
HaeIII GGCC 1 cut(s) 620
HapII CCGG 1 cut(s) 29
HgaI GACGC 1 cut(s) 492
Hin1I GRCGYC 1 cut(s) 503
Hin1II CATG 3 cut(s) 544, 755, 767
HindIII AAGCTT 2 cut(s) 162, 222
HinfI GANTC 6 cut(s) 182, 232, 240, 335, 493, 772
HpaII CCGG 1 cut(s) 29
HphI GGTGA 4 cut(s) 113, 451, 544, 670
Hpy166II GTNNAC 1 cut(s) 565
Hpy188I TCNGA 4 cut(s) 7, 253, 454, 771
Hpy188III TCNNGA 7 cut(s) 262, 346, 361, 419, 512, 717, 752
Hpy8I GTNNAC 1 cut(s) 565
Hpy99I CGWCG 1 cut(s) 508
HpyAV CCTTC 3 cut(s) 199, 325, 547
HpyCH4III ACNGT 4 cut(s) 560, 569, 749, 779
HpyCH4V TGCA 2 cut(s) 367, 614
HpyF3I CTNAG 5 cut(s) 6, 279, 470, 513, 690
Hsp92I GRCGYC 1 cut(s) 503
Hsp92II CATG 3 cut(s) 544, 755, 767
Kzo9I GATC 2 cut(s) 351, 667
LmnI GCTCC 5 cut(s) 76, 445, 466, 594, 790
Lsp1109I GCAGC 1 cut(s) 379
LweI GCATC 1 cut(s) 354
MaeI CTAG 1 cut(s) 402
MaeIII GTNAC 2 cut(s) 439, 658
MalI GATC 2 cut(s) 353, 669
MboI GATC 2 cut(s) 351, 667
MboII GAAGA 8 cut(s) 266, 340, 488, 491, 586, 593, 699, 808
MhlI GDGCHC 2 cut(s) 81, 398
MlsI TGGCCA 1 cut(s) 620
MluCI AATT 4 cut(s) 86, 526, 756, 814
MluNI TGGCCA 1 cut(s) 620
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 1 cut(s) 432
Mox20I TGGCCA 1 cut(s) 620
MscI TGGCCA 1 cut(s) 620
MseI TTAA 2 cut(s) 90, 429
Msp20I TGGCCA 1 cut(s) 620
MspI CCGG 1 cut(s) 29
MspR9I CCNGG 2 cut(s) 29, 47
Mva1269I GAATGC 1 cut(s) 616
MvaI CCWGG 1 cut(s) 47
NciI CCSGG 1 cut(s) 29
NdeII GATC 2 cut(s) 351, 667
NlaIII CATG 3 cut(s) 544, 755, 767
NlaIV GGNNCC 4 cut(s) 14, 78, 413, 676
NmuCI GTSAC 2 cut(s) 439, 658
NspI RCATGY 2 cut(s) 544, 767
PaeI GCATGC 1 cut(s) 544
PagI TCATGA 1 cut(s) 751
PciI ACATGT 1 cut(s) 763
PctI GAATGC 1 cut(s) 616
PfeI GAWTC 5 cut(s) 232, 240, 335, 493, 772
PkrI GCNGC 1 cut(s) 369
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
PscI ACATGT 1 cut(s) 763
Psp6I CCWGG 1 cut(s) 45
PspFI CCCAGC 1 cut(s) 653
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 4 cut(s) 14, 78, 413, 676
PspPI GGNCC 3 cut(s) 65, 259, 412
SaqAI TTAA 2 cut(s) 90, 429
SatI GCNGC 1 cut(s) 368
Sau3AI GATC 2 cut(s) 351, 667
Sau96I GGNCC 3 cut(s) 65, 259, 412
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 2 cut(s) 29, 47
SduI GDGCHC 2 cut(s) 81, 398
SfaNI GCATC 1 cut(s) 354
SinI GGWCC 3 cut(s) 65, 259, 412
SmlI CTYRAG 3 cut(s) 311, 359, 419
SmoI CTYRAG 3 cut(s) 311, 359, 419
SpeI ACTAGT 1 cut(s) 401
SphI GCATGC 1 cut(s) 544
Sse9I AATT 4 cut(s) 86, 526, 756, 814
SsiI CCGC 1 cut(s) 409
SspMI CTAG 1 cut(s) 402
StyD4I CCNGG 2 cut(s) 27, 45
StyI CCWWGG 1 cut(s) 291
TaaI ACNGT 4 cut(s) 560, 569, 749, 779
TaqI TCGA 5 cut(s) 71, 230, 345, 491, 579
TasI AATT 4 cut(s) 86, 526, 756, 814
TfiI GAWTC 5 cut(s) 232, 240, 335, 493, 772
Tru1I TTAA 2 cut(s) 90, 429
Tru9I TTAA 2 cut(s) 90, 429
TscAI CASTG 3 cut(s) 565, 621, 782
TseFI GTSAC 2 cut(s) 439, 658
TseI GCWGC 1 cut(s) 367
Tsp45I GTSAC 2 cut(s) 439, 658
TspDTI ATGAA 4 cut(s) 203, 331, 588, 768
TspGWI ACGGA 1 cut(s) 458
TspRI CASTG 3 cut(s) 565, 621, 782
VpaK11BI GGWCC 3 cut(s) 65, 259, 412
XapI RAATTY 2 cut(s) 86, 814
XceI RCATGY 2 cut(s) 544, 767
XcmI CCANNNNNNNNNTGG 2 cut(s) 89, 298
XmiI GTMKAC 1 cut(s) 564
XspI CTAG 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.