Mitochondrial protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 593 |
| AccB1I | GGYRCC | 1 cut(s) | 593 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 985 |
| AccII | CGCG | 1 cut(s) | 108 |
| AciI | CCGC | 5 cut(s) | 106, 108, 291, 1038, 1423 |
| AclWI | GGATC | 2 cut(s) | 153, 383 |
| AcsI | RAATTY | 1 cut(s) | 486 |
| AcuI | CTGAAG | 2 cut(s) | 409, 1346 |
| AfaI | GTAC | 7 cut(s) | 312, 430, 595, 691, 698, 1046, 1263 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 985 |
| AflII | CTTAAG | 1 cut(s) | 511 |
| AgeI | ACCGGT | 1 cut(s) | 699 |
| AgsI | TTSAA | 6 cut(s) | 371, 544, 643, 721, 733, 940 |
| AjnI | CCWGG | 3 cut(s) | 951, 969, 1108 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 155, 187, 404, 432, 436, 464 |
| AleI | CACNNNNGTG | 1 cut(s) | 192 |
| AluBI | AGCT | 6 cut(s) | 392, 477, 646, 1220, 1346, 1395 |
| AluI | AGCT | 6 cut(s) | 392, 477, 646, 1220, 1346, 1395 |
| Alw26I | GTCTC | 4 cut(s) | 357, 547, 578, 825 |
| AlwI | GGATC | 2 cut(s) | 153, 383 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1109 |
| AoxI | GGCC | 4 cut(s) | 128, 205, 778, 796 |
| ApeKI | GCWGC | 2 cut(s) | 80, 528 |
| ApoI | RAATTY | 1 cut(s) | 486 |
| AsiGI | ACCGGT | 1 cut(s) | 699 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 63 |
| Asp718I | GGTACC | 1 cut(s) | 593 |
| AspS9I | GGNCC | 3 cut(s) | 128, 778, 851 |
| AsuHPI | GGTGA | 8 cut(s) | 317, 344, 455, 512, 611, 737, 1046, 1226 |
| AvaII | GGWCC | 1 cut(s) | 851 |
| BaeGI | GKGCMC | 1 cut(s) | 1362 |
| BanI | GGYRCC | 1 cut(s) | 593 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1371, 1403 |
| BbsI | GAAGAC | 1 cut(s) | 1106 |
| BbvI | GCAGC | 2 cut(s) | 92, 515 |
| BccI | CCATC | 4 cut(s) | 457, 596, 1163, 1264 |
| BceAI | ACGGC | 1 cut(s) | 1051 |
| BciT130I | CCWGG | 3 cut(s) | 953, 971, 1110 |
| BclI | TGATCA | 1 cut(s) | 1242 |
| BcoDI | GTCTC | 4 cut(s) | 357, 547, 578, 825 |
| BfaI | CTAG | 3 cut(s) | 132, 153, 755 |
| BfrI | CTTAAG | 1 cut(s) | 511 |
| BisI | GCNGC | 3 cut(s) | 81, 529, 1039 |
| BlsI | GCNGC | 3 cut(s) | 82, 530, 1040 |
| Bme1390I | CCNGG | 3 cut(s) | 953, 971, 1110 |
| Bme18I | GGWCC | 1 cut(s) | 851 |
| BmgT120I | GGNCC | 3 cut(s) | 128, 778, 851 |
| BmiI | GGNNCC | 2 cut(s) | 595, 853 |
| BmrFI | CCNGG | 3 cut(s) | 953, 971, 1110 |
| BmrI | ACTGGG | 1 cut(s) | 1011 |
| BmsI | GCATC | 2 cut(s) | 898, 1414 |
| BmuI | ACTGGG | 1 cut(s) | 1011 |
| BpiI | GAAGAC | 1 cut(s) | 1106 |
| BpuEI | CTTGAG | 1 cut(s) | 998 |
| BsaBI | GATNNNNATC | 2 cut(s) | 587, 1255 |
| BsaJI | CCNNGG | 3 cut(s) | 106, 855, 984 |
| BsaWI | WCCGGW | 1 cut(s) | 699 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 985 |
| Bse118I | RCCGGY | 1 cut(s) | 699 |
| Bse1I | ACTGG | 4 cut(s) | 283, 1006, 1057, 1303 |
| Bse8I | GATNNNNATC | 2 cut(s) | 587, 1255 |
| BseBI | CCWGG | 3 cut(s) | 953, 971, 1110 |
| BseDI | CCNNGG | 3 cut(s) | 106, 855, 984 |
| BseJI | GATNNNNATC | 2 cut(s) | 587, 1255 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 985 |
| BseNI | ACTGG | 4 cut(s) | 283, 1006, 1057, 1303 |
| BseSI | GKGCMC | 1 cut(s) | 1362 |
| BseXI | GCAGC | 2 cut(s) | 92, 515 |
| BseYI | CCCAGC | 1 cut(s) | 775 |
| Bsh1236I | CGCG | 1 cut(s) | 108 |
| BshFI | GGCC | 4 cut(s) | 130, 207, 780, 798 |
| BshNI | GGYRCC | 1 cut(s) | 593 |
| BshTI | ACCGGT | 1 cut(s) | 699 |
| BsiSI | CCGG | 1 cut(s) | 700 |
| BslFI | GGGAC | 1 cut(s) | 837 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 985 |
| BsmAI | GTCTC | 4 cut(s) | 357, 547, 578, 825 |
| BsmBI | CGTCTC | 1 cut(s) | 578 |
| BsmFI | GGGAC | 1 cut(s) | 837 |
| BsmI | GAATGC | 1 cut(s) | 739 |
| BsnI | GGCC | 4 cut(s) | 130, 207, 780, 798 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1362 |
| Bsp143I | GATC | 6 cut(s) | 158, 375, 601, 1242, 1250, 1374 |
| Bsp19I | CCATGG | 2 cut(s) | 855, 984 |
| BspACI | CCGC | 5 cut(s) | 106, 108, 291, 1038, 1423 |
| BspANI | GGCC | 4 cut(s) | 130, 207, 780, 798 |
| BspFNI | CGCG | 1 cut(s) | 108 |
| BspHI | TCATGA | 1 cut(s) | 1093 |
| BspLI | GGNNCC | 2 cut(s) | 595, 853 |
| BspPI | GGATC | 2 cut(s) | 153, 383 |
| BspT107I | GGYRCC | 1 cut(s) | 593 |
| BspTI | CTTAAG | 1 cut(s) | 511 |
| BsrFI | RCCGGY | 1 cut(s) | 699 |
| BsrI | ACTGG | 4 cut(s) | 283, 1006, 1057, 1303 |
| BssAI | RCCGGY | 1 cut(s) | 699 |
| BssECI | CCNNGG | 3 cut(s) | 106, 855, 984 |
| BssMI | GATC | 6 cut(s) | 158, 375, 601, 1242, 1250, 1374 |
| BssT1I | CCWWGG | 2 cut(s) | 855, 984 |
| Bst2UI | CCWGG | 3 cut(s) | 953, 971, 1110 |
| Bst4CI | ACNGT | 4 cut(s) | 194, 1105, 1130, 1402 |
| Bst6I | CTCTTC | 1 cut(s) | 230 |
| BstAFI | CTTAAG | 1 cut(s) | 511 |
| BstC8I | GCNNGC | 3 cut(s) | 37, 184, 1234 |
| BstDEI | CTNAG | 1 cut(s) | 1200 |
| BstDSI | CCRYGG | 3 cut(s) | 106, 855, 984 |
| BstFNI | CGCG | 1 cut(s) | 108 |
| BstKTI | GATC | 6 cut(s) | 161, 378, 604, 1245, 1253, 1377 |
| BstMAI | GTCTC | 4 cut(s) | 357, 547, 578, 825 |
| BstMBI | GATC | 6 cut(s) | 158, 375, 601, 1242, 1250, 1374 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 77, 114, 204, 772, 786, 795, 1026, 1035 |
| BstNI | CCWGG | 3 cut(s) | 953, 971, 1110 |
| BstNSI | RCATGY | 3 cut(s) | 39, 186, 1358 |
| BstSCI | CCNGG | 3 cut(s) | 951, 969, 1108 |
| BstSLI | GKGCMC | 1 cut(s) | 1362 |
| BstUI | CGCG | 1 cut(s) | 108 |
| BstV1I | GCAGC | 2 cut(s) | 92, 515 |
| BstV2I | GAAGAC | 1 cut(s) | 1106 |
| BstX2I | RGATCY | 1 cut(s) | 375 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 194 |
| BstYI | RGATCY | 1 cut(s) | 375 |
| BsuRI | GGCC | 4 cut(s) | 130, 207, 780, 798 |
| BtgI | CCRYGG | 3 cut(s) | 106, 855, 984 |
| BtsIMutI | CAGTG | 1 cut(s) | 190 |
| Cac8I | GCNNGC | 3 cut(s) | 37, 184, 1234 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1109 |
| CciI | TCATGA | 1 cut(s) | 1093 |
| Cfr10I | RCCGGY | 1 cut(s) | 699 |
| Cfr13I | GGNCC | 3 cut(s) | 128, 778, 851 |
| Cfr42I | CCGCGG | 1 cut(s) | 109 |
| CsiI | ACCWGGT | 1 cut(s) | 951 |
| Csp6I | GTAC | 7 cut(s) | 311, 429, 594, 690, 697, 1045, 1262 |
| CspAI | ACCGGT | 1 cut(s) | 699 |
| CviQI | GTAC | 7 cut(s) | 311, 429, 594, 690, 697, 1045, 1262 |
| DdeI | CTNAG | 1 cut(s) | 1200 |
| DpnI | GATC | 6 cut(s) | 160, 377, 603, 1244, 1252, 1376 |
| DpnII | GATC | 6 cut(s) | 158, 375, 601, 1242, 1250, 1374 |
| Eam1104I | CTCTTC | 1 cut(s) | 230 |
| EarI | CTCTTC | 1 cut(s) | 230 |
| Eco130I | CCWWGG | 2 cut(s) | 855, 984 |
| Eco147I | AGGCCT | 1 cut(s) | 798 |
| Eco32I | GATATC | 2 cut(s) | 505, 585 |
| Eco47I | GGWCC | 1 cut(s) | 851 |
| Eco57I | CTGAAG | 2 cut(s) | 409, 1346 |
| EcoO109I | RGGNCCY | 1 cut(s) | 128 |
| EcoRII | CCWGG | 3 cut(s) | 951, 969, 1108 |
| EcoRV | GATATC | 2 cut(s) | 505, 585 |
| EcoT14I | CCWWGG | 2 cut(s) | 855, 984 |
| ErhI | CCWWGG | 2 cut(s) | 855, 984 |
| Esp3I | CGTCTC | 1 cut(s) | 578 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 666, 698 |
| FaqI | GGGAC | 1 cut(s) | 837 |
| FauNDI | CATATG | 2 cut(s) | 210, 345 |
| FbaI | TGATCA | 1 cut(s) | 1242 |
| Fnu4HI | GCNGC | 3 cut(s) | 81, 529, 1039 |
| Fsp4HI | GCNGC | 3 cut(s) | 81, 529, 1039 |
| FspBI | CTAG | 3 cut(s) | 132, 153, 755 |
| GluI | GCNGC | 3 cut(s) | 81, 529, 1039 |
| GsaI | CCCAGC | 1 cut(s) | 779 |
| HaeIII | GGCC | 4 cut(s) | 130, 207, 780, 798 |
| HapII | CCGG | 1 cut(s) | 700 |
| HindIII | AAGCTT | 2 cut(s) | 644, 1344 |
| HinfI | GANTC | 3 cut(s) | 148, 746, 866 |
| HpaII | CCGG | 1 cut(s) | 700 |
| HphI | GGTGA | 8 cut(s) | 317, 344, 455, 512, 611, 737, 1046, 1226 |
| Hpy166II | GTNNAC | 1 cut(s) | 1047 |
| Hpy188I | TCNGA | 5 cut(s) | 264, 358, 582, 963, 1326 |
| Hpy188III | TCNNGA | 7 cut(s) | 16, 563, 755, 915, 1094, 1274, 1283 |
| Hpy8I | GTNNAC | 1 cut(s) | 1047 |
| HpyAV | CCTTC | 8 cut(s) | 197, 245, 406, 434, 626, 912, 1031, 1321 |
| HpyCH4III | ACNGT | 4 cut(s) | 194, 1105, 1130, 1402 |
| HpyCH4IV | ACGT | 4 cut(s) | 407, 571, 692, 1090 |
| HpyCH4V | TGCA | 7 cut(s) | 182, 343, 710, 1190, 1341, 1354, 1405 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 77, 114, 204, 772, 786, 795, 1026, 1035 |
| HpyF3I | CTNAG | 1 cut(s) | 1200 |
| HpySE526I | ACGT | 4 cut(s) | 407, 571, 692, 1090 |
| KpnI | GGTACC | 1 cut(s) | 597 |
| Ksp22I | TGATCA | 1 cut(s) | 1242 |
| KspI | CCGCGG | 1 cut(s) | 109 |
| Kzo9I | GATC | 6 cut(s) | 158, 375, 601, 1242, 1250, 1374 |
| LmnI | GCTCC | 1 cut(s) | 389 |
| Lsp1109I | GCAGC | 2 cut(s) | 92, 515 |
| LweI | GCATC | 2 cut(s) | 898, 1414 |
| MabI | ACCWGGT | 1 cut(s) | 951 |
| MaeI | CTAG | 3 cut(s) | 132, 153, 755 |
| MaeII | ACGT | 4 cut(s) | 407, 571, 692, 1090 |
| MaeIII | GTNAC | 4 cut(s) | 94, 443, 867, 892 |
| MalI | GATC | 6 cut(s) | 160, 377, 603, 1244, 1252, 1376 |
| MboI | GATC | 6 cut(s) | 158, 375, 601, 1242, 1250, 1374 |
| MfeI | CAATTG | 1 cut(s) | 533 |
| MflI | RGATCY | 1 cut(s) | 375 |
| MhlI | GDGCHC | 1 cut(s) | 1362 |
| MluCI | AATT | 5 cut(s) | 220, 486, 495, 533, 638 |
| MlyI | GAGTC | 3 cut(s) | 157, 740, 875 |
| MnlI | CCTC | 7 cut(s) | 119, 128, 736, 765, 987, 1020, 1176 |
| MroXI | GAANNNNTTC | 1 cut(s) | 63 |
| MseI | TTAA | 3 cut(s) | 26, 512, 659 |
| MslI | CAYNNNNRTG | 2 cut(s) | 192, 1128 |
| MspA1I | CMGCKG | 2 cut(s) | 108, 293 |
| MspCI | CTTAAG | 1 cut(s) | 511 |
| MspI | CCGG | 1 cut(s) | 700 |
| MspR9I | CCNGG | 3 cut(s) | 953, 971, 1110 |
| MunI | CAATTG | 1 cut(s) | 533 |
| Mva1269I | GAATGC | 1 cut(s) | 739 |
| MvaI | CCWGG | 3 cut(s) | 953, 971, 1110 |
| MvnI | CGCG | 1 cut(s) | 108 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 77, 114, 204, 772, 786, 795, 1026, 1035 |
| NcoI | CCATGG | 2 cut(s) | 855, 984 |
| NdeI | CATATG | 2 cut(s) | 210, 345 |
| NdeII | GATC | 6 cut(s) | 158, 375, 601, 1242, 1250, 1374 |
| NlaIV | GGNNCC | 2 cut(s) | 595, 853 |
| NmeAIII | GCCGAG | 1 cut(s) | 504 |
| NmuCI | GTSAC | 3 cut(s) | 94, 443, 867 |
| NspI | RCATGY | 3 cut(s) | 39, 186, 1358 |
| OliI | CACNNNNGTG | 1 cut(s) | 192 |
| PaeI | GCATGC | 2 cut(s) | 39, 186 |
| PagI | TCATGA | 1 cut(s) | 1093 |
| PceI | AGGCCT | 1 cut(s) | 798 |
| PctI | GAATGC | 1 cut(s) | 739 |
| PdmI | GAANNNNTTC | 1 cut(s) | 63 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 985 |
| PfoI | TCCNGGA | 2 cut(s) | 969, 1108 |
| PinAI | ACCGGT | 1 cut(s) | 699 |
| PkrI | GCNGC | 3 cut(s) | 82, 530, 1040 |
| PleI | GAGTC | 3 cut(s) | 156, 740, 874 |
| PpsI | GAGTC | 3 cut(s) | 156, 740, 874 |
| Psp6I | CCWGG | 3 cut(s) | 951, 969, 1108 |
| PspFI | CCCAGC | 1 cut(s) | 775 |
| PspGI | CCWGG | 3 cut(s) | 951, 969, 1108 |
| PspN4I | GGNNCC | 2 cut(s) | 595, 853 |
| PspPI | GGNCC | 3 cut(s) | 128, 778, 851 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1109 |
| PsuI | RGATCY | 1 cut(s) | 375 |
| RsaI | GTAC | 7 cut(s) | 312, 430, 595, 691, 698, 1046, 1263 |
| RsaNI | GTAC | 7 cut(s) | 311, 429, 594, 690, 697, 1045, 1262 |
| RseI | CAYNNNNRTG | 2 cut(s) | 192, 1128 |
| SacII | CCGCGG | 1 cut(s) | 109 |
| SaqAI | TTAA | 3 cut(s) | 26, 512, 659 |
| SatI | GCNGC | 3 cut(s) | 81, 529, 1039 |
| Sau3AI | GATC | 6 cut(s) | 158, 375, 601, 1242, 1250, 1374 |
| Sau96I | GGNCC | 3 cut(s) | 128, 778, 851 |
| SchI | GAGTC | 3 cut(s) | 157, 740, 875 |
| ScrFI | CCNGG | 3 cut(s) | 953, 971, 1110 |
| SduI | GDGCHC | 1 cut(s) | 1362 |
| SexAI | ACCWGGT | 1 cut(s) | 951 |
| SfaNI | GCATC | 2 cut(s) | 898, 1414 |
| Sfr303I | CCGCGG | 1 cut(s) | 109 |
| SgrBI | CCGCGG | 1 cut(s) | 109 |
| SinI | GGWCC | 1 cut(s) | 851 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 192, 1128 |
| SmlI | CTYRAG | 2 cut(s) | 511, 1013 |
| SmoI | CTYRAG | 2 cut(s) | 511, 1013 |
| SphI | GCATGC | 2 cut(s) | 39, 186 |
| Sse9I | AATT | 5 cut(s) | 220, 486, 495, 533, 638 |
| SseBI | AGGCCT | 1 cut(s) | 798 |
| SsiI | CCGC | 5 cut(s) | 106, 108, 291, 1038, 1423 |
| SspI | AATATT | 2 cut(s) | 321, 887 |
| SspMI | CTAG | 3 cut(s) | 132, 153, 755 |
| StuI | AGGCCT | 1 cut(s) | 798 |
| StyD4I | CCNGG | 3 cut(s) | 951, 969, 1108 |
| StyI | CCWWGG | 2 cut(s) | 855, 984 |
| TaaI | ACNGT | 4 cut(s) | 194, 1105, 1130, 1402 |
| TaiI | ACGT | 4 cut(s) | 410, 574, 695, 1093 |
| TaqI | TCGA | 4 cut(s) | 226, 604, 864, 1377 |
| TasI | AATT | 5 cut(s) | 220, 486, 495, 533, 638 |
| TatI | WGTACW | 2 cut(s) | 428, 1044 |
| TauI | GCSGC | 1 cut(s) | 1041 |
| Tru1I | TTAA | 3 cut(s) | 26, 512, 659 |
| Tru9I | TTAA | 3 cut(s) | 26, 512, 659 |
| TscAI | CASTG | 1 cut(s) | 197 |
| TseFI | GTSAC | 3 cut(s) | 94, 443, 867 |
| TseI | GCWGC | 2 cut(s) | 80, 528 |
| Tsp45I | GTSAC | 3 cut(s) | 94, 443, 867 |
| TspDTI | ATGAA | 4 cut(s) | 59, 227, 486, 1160 |
| TspRI | CASTG | 1 cut(s) | 197 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 985 |
| Vha464I | CTTAAG | 1 cut(s) | 511 |
| VpaK11BI | GGWCC | 1 cut(s) | 851 |
| XapI | RAATTY | 1 cut(s) | 486 |
| XbaI | TCTAGA | 1 cut(s) | 754 |
| XceI | RCATGY | 3 cut(s) | 39, 186, 1358 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1290 |
| XmnI | GAANNNNTTC | 1 cut(s) | 63 |
| XspI | CTAG | 3 cut(s) | 132, 153, 755 |